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  1. 1.   Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome
  2. Masood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G; Zheng, Lily; Zhao,Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A; Xiao, Wenming; Meerzaman, Daoud M
  3. Genome Biology. 2024, Jun 20; 25(1): 163.
  1. 2.   RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases
  2. Zhang,Di; Czapinska, Honorata; Bochtler, Matthias; Wlodawer,Alexander; Lubkowski,Jacek
  3. Protein Science : a publication of the Protein Society. 2024, Apr; 33(4): e4920.
  1. 3.   Protocol for the saturation and multiplexing of genetic variants using CRISPR-Cas9
  2. Sahu,Sounak; Sullivan,Teresa; Southon,Eileen; Caylor,Dylan; Geh, Josephine; Sharan,Shyam
  3. STAR Protocols. 2023, Nov 08; 4(4): 102702.
  1. 4.   Protocol for using single-cell sequencing to study the heterogeneity of NF1 nerve sheath tumors from clinical biospecimens
  2. Zhang, Xiyuan; Gopalan, Vishaka; Syed,Neeraja; Hannenhalli, Sridhar; Shern, Jack F
  3. STAR Protocols. 2023, May 10; 4(2): 102297.
  1. 5.   Gene network landscape of mouse splenocytes reveals integrin complex as the A151 ODN-responsive hub molecule in the immune transcriptome
  2. Yazar, Volkan; Yilmaz, Ismail Cem; Bulbul, Artun; Klinman, Dennis M; Gursel, Ihsan
  3. Molecular Therapy. Nucleic Acids. 2023, Mar 14; 31: 553-565.
  1. 6.   IFN gamma Is a Key Link between Obesity and Th1-Mediated AutoImmune Diseases
  2. Bae,Heekyong; Choi, Myung-Sook; Kim, Suntae; Young,Howard; Gershwin, M. Eric; Jeon, Seon-Min; Kwon, Eun-Young
  3. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2021, Jan; 22(1):
  1. 7.   Novel targets identified by integrated cancer-stromal interactome analysis of pancreatic adenocarcinoma
  2. Hiroshima, Yukihiko; Kasajima, Rika; Kimura, Yayoi; Komura, Daisuke; Ishikawa, Shumpei; Ichikawa, Yasushi; Bouvet, Michael; Yamamoto, Naoto; Oshima, Takashi; Morinaga, Soichiro; Singh,Shree Ram; Hoffman, Robert M; Endo, Itaru; Miyagi, Yohei
  3. Cancer letters. 2020, Jan 28; 469: 217-227.
  1. 8.   SL-BioDP: Multi-Cancer Interactive Tool for Prediction of Synthetic Lethality and Response to Cancer Treatment
  2. Deng,Xiang; Das, Shaoli; Valdez,Kristin; Camphausen, Kevin; Shankavaram, Uma
  3. Cancers. 2019, Nov; 11(11): pii: E1682.
  1. 9.   Predicting the broadly neutralizing antibody susceptibility of the HIV reservoir
  2. Yu, Wen-Han; Su, David; Torabi, Julia; Fennessey,Christine; Shiakolas, Andrea; Lynch, Rebecca; Chun, Tae-Wook; Doria-Rose, Nicole; Alter, Galit; Seaman, Michael S; Keele,Brandon; Lauffenburger, Douglas A; Julg, Boris
  3. JCI insight. 2019, Sep 05; 4(17): pii: 130153.
  1. 10.   Viral coinfection analysis using a MinHash toolkit
  2. Dawson, Eric T; Wagner,Sarah; Roberson, David; Yeager,Meredith; Boland,Joseph; Garrison, Erik; Chanock, Stephen; Schiffman, Mark; Raine-Bennett, Tina; Lorey, Thomas; Castle, Phillip E; Mirabello, Lisa; Durbin, Richard
  3. BMC bioinformatics. 2019, Jul 12; 20(1): 389.
  1. 11.   Agreement in Histological Assessment of Mitotic Activity Between Microscopy and Digital Whole Slide Images Informs Conversion for Clinical Diagnosis
  2. Wei,Bih; Halsey, Charles H; Hoover, Shelley B; Puri, Munish; Yang, Howard H; Gallas, Brandon D; Lee, Maxwell P; Chen, Weijie; Durham, Amy C; Dwyer, Jennifer E; Sánchez, Melissa D; Traslavina, Ryan P; Frank, Chad; Bradley, Charles; McGill, Lawrence D; Esplin, D Glen; Schaffer, Paula A; Cramer, Sarah D; Lyle, L Tiffany; Beck, Jessica; Buza, Elizabeth; Gong, Qi; Hewitt, Stephen M; Simpson, R Mark
  3. Academic pathology. 2019, JUL 11; 6
  1. 12.   Integrated analysis of competing endogenous RNA network revealing potential prognostic biomarkers of hepatocellular carcinoma
  2. Liao, Xiwen; Wang, Xiangkun; Huang, Ketuan; Han, Chuangye; Deng, Jianlong; Yu, Tingdong; Yang, Chengkun; Huang, Rui; Liu, Xiaoguang; Yu, Long; Zhu, Guangzhi; Su, Hao; Qin, Wei; Zeng, Xianmin; Han, Bowen; Han, Quanfa; Liu, Zhengqian; Zhou, Xin; Gong, Yizhen; Liu, Zhengtao; Huang, Jianly; Winkler,Cheryl; O'Brien, Stephen J.; Ye, Xinping; Peng, Tao
  3. JOURNAL OF CANCER. 2019, Jun 2; 10(14): 3267-3283.
  1. 13.   Computational Structural Biology: Successes, Future Directions, and Challenges
  2. Nussinov, Ruth; Tsai, Chung-Jung; Shehu, Amarda; Jang, Hyunbum
  3. Molecules (Basel, Switzerland). 2019, Feb 1; 24(3):
  1. 14.   Automated Computational Detection, Quantitation, and Mapping of Mitosis in Whole-Slide Images for Clinically Actionable Surgical Pathology Decision Support
  2. Puri, Munish; Hoover, Shelley B; Hewitt, Stephen M; Wei,Bih; Adissu, Hibret Amare; Halsey, Charles H C; Beck, Jessica; Bradley, Charles; Cramer, Sarah D; Durham, Amy C; Esplin, D Glen; Frank, Chad; Lyle, L Tiffany; McGill, Lawrence D; Sánchez, Melissa D; Schaffer, Paula A; Traslavina, Ryan P; Buza, Elizabeth; Yang, Howard H; Lee, Maxwell P; Dwyer, Jennifer E; Simpson, R Mark
  3. Journal of pathology informatics. 2019, Feb; 10: 4.
  1. 15.   GENE EXPRESSION IN MULTIPLE REGIONS OF THE RAT BRAIN DURING CHRONIC NEUROPATHIC PAIN DEVELOPMENT: MRNA SEQUENCING ANALYSIS
  2. Clifford, John L.; Kumar, Raina; Srinivasan, Seshamalini; Dimitrov, George; Gautam, Aarti; Yang, Ruoting; Williams, Joshua; Workman, Emily; Chavez, Roger; Sosanya, Natasha; Cheppudira, Bopaiah; Christy, Robert; Hammamieh, Rasha
  3. JOURNAL OF NEUROTRAUMA. 2018, AUG; 35: A31-A31.
  1. 16.   Transmission, Evolution, and Endogenization: Lessons Learned from Recent Retroviral Invasions
  2. Greenwood, Alex D; Ishida, Yasuko; O'Brien, Sean; Roca, Alfred L; Eiden, Maribeth V
  3. Microbiology and molecular biology reviews : MMBR. 2018, Mar; 1092-2172:(1): pii: e00044-17.
  1. 17.   Integration among databases and data sets to support productive nanotechnology: Challenges and recommendations
  2. Karcher, Sandra; Willighagen, Egon L.; Rumble, John; Ehrhart, Friederike; Evelo, Chris T.; Fritts, Martin; Gaheen, Sharon; Harper, Stacey L.; Hoover, Mark D.; Jeliazkova, Nina; Lewinski, Nastassja; Robinson, Richard L. Marchese; Mills, Karmann C.; Mustad, Axel P.; Thomas, Dennis G.; Tsiliki, Georgia; Hendren, Christine Ogilvie
  3. NanoImpact. 2018, Jan; 9: 85-101.
  1. 18.   Structure of the cytoplasmic domain of Yersinia pestis YscD, an essential component of the type III secretion system
  2. Lountos, G. T.; Tropea, J. E.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2012, Mar; 68: 201-209.
  1. 19.   Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on
  2. O'Boyle, N. M.; Guha, R.; Willighagen, E. L.; Adams, S. E.; Alvarsson, J.; Bradley, J. C.; Filippov, I. V.; Hanson, R. M.; Hanwell, M. D.; Hutchison, G. R.; James, C. A.; Jeliazkova, N.; Lang, A.; Langner, K. M.; Lonie, D. C.; Lowe, D. M.; Pansanel, J.; Pavlov, D.; Spjuth, O.; Steinbeck, C.; Tenderholt, A. L.; Theisen, K. J.; Murray-Rust, P.
  3. Journal of Cheminformatics. 2011, Oct; 3
  1. 20.   Informatics and standards for nanomedicine technology
  2. Thomas, D. G.; Klaessig, F.; Harper, S. L.; Fritts, M.; Hoover, M. D.; Gaheen, S.; Stokes, T. H.; Reznik-Zellen, R.; Freund, E. T.; Klemm, J. D.; Paik, D. S.; Baker, N. A.
  3. Wiley Interdisciplinary Reviews-Nanomedicine and Nanobiotechnology. 2011, Sep-Oct; 3(5): 511-532.
  1. 21.   Nanoinformatics: an emerging area of information technology at the intersection of bioinformatics, computational chemistry and nanobiotechnology
  2. Gonzalez-Nilo, F. G.-N. F.; Perez-Acle, T.; Guinez-Molinos, S.; Geraldo, D. A.; Sandoval, C.; Yevenes, A.; Santos, L. S.; Laurie, V. F.; Mendoza, H.; Cachau, R. E.
  3. Biological Research. 2011 44(1): 43-51.
  1. 22.   Data Liquidity in Health Information Systems
  2. Courtney, P. K.
  3. Cancer Journal. 2011, Jul-Aug; 17(4): 219-221.
  1. 23.   Tautomerism in large databases
  2. Sitzmann, M.; Ihlenfeldt, W. D.; Nicklaus, M. C.
  3. Journal of Computer-Aided Molecular Design. 2010, Jun; 24(6-7): 521-551.
  1. 24.   Quality Assessment of Microarray Data in a Multicenter Study
  2. Archer, K. J.; Mas, V. R.; O'Brien, T. R.; Pfeiffer, R.; Lum, N. L.; Fisher, R. A.
  3. Diagnostic Molecular Pathology. 2009 18(1): 34-43.
  1. 25.   The NCI Thesaurus quality assurance life cycle
  2. de Coronado, S.; Wright, L. W.; Fragoso, G.; Haber, M. W.; Hahn-Dantona, E. A.; Hartel, F. W.; Quan, S. L.; Safran, T.; Thomas, N.; Whiteman, L.
  3. Journal of Biomedical Informatics. 2009 42(3): 530-539.
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