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  1. 1.   Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and stochastic splice site selection
  2. Wan, Yihan; Anastasakis, Dimitrios G.; Rodriguez, Joseph; Palangat, Murali; Gudla, Prabhakar; Zaki,George; Tandon,Mayank; Pegoraro, Gianluca; Chow, Carson C.; Hafner, Markus; Larson, Daniel R.
  3. CELL. 2021, May 27; 184(11): 2878-2895.e20.
  1. 2.   Rapid response to emerging biomedical challenges and threats
  2. Grabowski, Marek; Macnar, Joanna M; Cymborowski, Marcin; Cooper, David R; Shabalin, Ivan G; Gilski, Miroslaw; Brzezinski, Dariusz; Kowiel, Marcin; Dauter,Zbigniew; Rupp, Bernhard; Wlodawer,Alexander; Jaskolski, Mariusz; Minor, Wladek
  3. IUCrJ. 2021, May 01; 8(Pt 3): 395-407.
  1. 3.   dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data
  2. Ou, Jianhong; Liu, Haibo; Nirala, Niraj K.; Stukalov, Alexey; Acharya,Usha; Green, Michael R.; Zhu, Lihua Julie
  3. PLOS ONE. 2020, NOV 6; 15(11):
  1. 4.   Network-based Prediction of Drug-Target Interactions using an Arbitrary-Order Proximity Embedded Deep Forest
  2. Zeng, Xiangxiang; Zhu, Siyi; Hou, Yuan; Zhang, Pengyue; Li, Lang; Li, Jing; Huang, L Frank; Lewis, Stephen J; Nussinov,Ruth; Cheng, Feixiong
  3. Bioinformatics (Oxford, England). 2020, MAY 1; 36(9): 2805-2812.
  1. 5.   Restriction enzymes use a 24 dimensional coding space to recognize 6 base long DNA sequences
  2. Schneider,Tom; Jejjala, Vishnu
  3. PloS one. 2019, OCT 31; 14(10): e0222419.
  1. 6.   PDB Ligand Conformational Energies Calculated Quantum-Mechanically
  2. Sitzmann, M.; Weidlich, I. E.; Filippov, I. V.; Liao, C.; Peach, M. L.; Ihlenfeldt, W. D.; Karki, R. G.; Borodina, Y. V.; Cachau, R. E.; Nicklaus, M. C.
  3. Journal of Chemical Information and Modeling. 2012, Mar; 52(3): 739-756.
  1. 7.   Correlating SHAPE signatures with three-dimensional RNA structures
  2. Bindewald, E.; Wendeler, M.; Legiewicz, M.; Bona, M. K.; Wang, Y.; Pritt, M. J.; Le Grice, S. F. J.; Shapiro, B. A.
  3. Rna-a Publication of the Rna Society. 2011, Sep; 17(9): 1688-1696.
  1. 8.   Grid-Enabled Measures Using Science 2.0 to Standardize Measures and Share Data
  2. Moser, R. P.; Hesse, B. W.; Shaikh, A. R.; Courtney, P.; Morgan, G.; Augustson, E.; Kobrin, S.; Levin, K. Y.; Helba, C.; Garner, D.; Dunn, M.; Coa, K.
  3. American Journal of Preventive Medicine. 2011, May; 40(5): S134-S143.
  1. 9.   Ultrastructural localization of extracellular matrix proteins of the lymph node cortex: evidence supporting the reticular network as a pathway for lymphocyte migration
  2. Sobocinski, G. P.; Toy, K.; Bobrowski, W. F.; Shaw, S.; Anderson, A. O.; Kaldjian, E. P.
  3. Bmc Immunology. 2010, Aug; 11: 11.
  1. 10.   CyloFold: secondary structure prediction including pseudoknots
  2. Bindewald, E.; Kluth, T.; Shapiro, B. A.
  3. Nucleic Acids Research. 2010, Jul; 38: W368-W372.
  1. 11.   FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking
  2. Mashiach, E.; Nussinov, R.; Wolfson, H. J.
  3. Nucleic Acids Research. 2010, Jul; 38: W457-W461.
  1. 12.   Nanoinformatics and DNA-Based Computing: Catalyzing Nanomedicine
  2. Maojo, V.; Martin-Sanchez, F.; Kulikowski, C.; Rodriguez-Paton, A.; Fritts, M.
  3. Pediatric Research. 2010, May; 67(5): 481-489.
  1. 13.   Mechanisms of transcription factor selectivity
  2. Pan, Y. P.; Tsai, C. J.; Ma, B. Y.; Nussinov, R.
  3. Trends in Genetics. 2010, Feb; 26(2): 75-83.
  1. 14.   Feature Identification via a Combined ICA-Wavelet Method for Image Information Mining
  2. Shah, V. P.; Younan, N. H.; Durbha, S. S.; King, R. L.
  3. Ieee Geoscience and Remote Sensing Letters. 2010, Jan; 7(1): 18-22.
  1. 15.   The NCI Thesaurus quality assurance life cycle
  2. de Coronado, S.; Wright, L. W.; Fragoso, G.; Haber, M. W.; Hahn-Dantona, E. A.; Hartel, F. W.; Quan, S. L.; Safran, T.; Thomas, N.; Whiteman, L.
  3. Journal of Biomedical Informatics. 2009 42(3): 530-539.
  1. 16.   Stewardship of Human Biospecimens, DNA, Genotype, and Clinical Data in the GWAS Era
  2. O'Brien, S. J.
  3. Annual review of genomics and human genetics. 2009 10: 193-209.
  1. 17.   Statistical Resolution of Ambiguous HLA Typing Data
  2. Listgarten, J.; Brumme, Z.; Kadie, C.; Gao, X. J.; Walker, B.; Carrington, M.; Goulder, P.; Heckerman, D.
  3. Plos Computational Biology. 2008 4(2):
  1. 18.   Effect of Adding a Virtual Community (Bulletin Board) to Smokefree.gov: Randomized Controlled Trial
  2. Stoddard, J. L.; Augustson, E. M.; Moser, R. P.
  3. Journal of Medical Internet Research. 2008 10(5): e53.
  1. 19.   A diagnosis-prescription system for nitrogen management in environment
  2. Zadeh, K. S.; Montas, H. J.; Shirmohammadi, A.; Sadeghzadeh, A.; Gudla, P. R.
  3. Journal of Environmental Science and Health Part a-Toxic/Hazardous Substances & Environmental Engineering. 2007, Apr; 42(5): 557-565.
  1. 20.   Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study
  2. Shankavaram, U. T.; Reinhold, W. C.; Nishizuka, S.; Major, S.; Morita, D.; Chary, K. K.; Reimers, M. A.; Scherf, U.; Kahn, A.; Dolginow, D.; Cossman, J.; Kaldjian, E. P.; Scudiero, D. A.; Petricoin, E.; Liotta, L.; Lee, J. K.; Weinstein, J. N.
  3. Molecular Cancer Therapeutics. 2007, Mar; 6(3): 820-832.
  1. 21.   Anatomy of Escherichia coli sigma(70) promoters
  2. Shultzaberger, R. K.; Chen, Z. H.; Lewis, Janine; Schneider, Tom
  3. Nucleic Acids Research. 2007, Feb; 35(3): 771-788.
  1. 22.   Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages
  2. del Sol, A.; Arauzo-Bravo, M. J.; Moya, D. A.; Nussinov, R.
  3. Genome Biology. 2007 8(5):
  1. 23.   Association of putative concave protein-binding sites with the fluctuation behavior of residues
  2. Ertekin, A.; Nussinov, R.; Haliloglu, T.
  3. Protein Science. 2006, Oct; 15(10): 2265-2277.
  1. 24.   CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments
  2. Bindewald, E.; Schneider, T. D.; Shapiro, B. A.
  3. Nucleic Acids Research. 2006, Jul; 34: W405-W411.
  1. 25.   Using mutual information to measure the impact of multiple genetic factors on AIDS
  2. Nelson, G. W.; O'Brien, S. J.
  3. Jaids-Journal of Acquired Immune Deficiency Syndromes. 2006, Jul; 42(3): 347-354.
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