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  1. 1.   Analysis of combinatorial CRISPR screens with the Orthrus scoring pipeline
  2. Ward, Henry N.; Aregger,Michael; Gonatopoulos Pournatzis,Thomas; Billmann, Maximilian; Ohsumi, Toshiro K.; Brown, Kevin R.; Blencowe, Benjamin J.; Moffat, Jason; Myers, Chad L.
  3. Nature protocols. 2021, Oct; 16(10): 4766-4798.
  1. 2.   A New Mixed All-Atom/Coarse-Grained Model: Application to Melittin Aggregation in Aqueous Solution
  2. Shelley, Mee Y.; SeIvan, Myvizhi Esai; Zhao, Jun; Babin, Volodymyr; Liao, Chenyi; Li, Jianing; Shelley, John C.
  3. JOURNAL OF CHEMICAL THEORY AND COMPUTATION. 2017, Aug; 13(8): 3881-3897.
  1. 3.   Allosteric modulators can restore function in an amino acid neurotransmitter receptor by slightly altering intra-molecular communication pathways
  2. Nussinov, R.
  3. British Journal of Pharmacology. 2012, Apr; 165(7): 2110-2112.
  1. 4.   Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement
  2. Tuncbag, N.; Keskin, O.; Nussinov, R.; Gursoy, A.
  3. Proteins-Structure Function and Bioinformatics. 2012, Apr; 80(4): 1239-1249.
  1. 5.   Comparison of Strong Cation Exchange and SDS-PAGE Fractionation for Analysis of Multiprotein Complexes
  2. Das, S.; Bosley, A. D.; Ye, X. Y.; Chan, K. C.; Chu, I.; Green, J. E.; Issaq, H. J.; Veenstra, T. D.; Andresson, T.
  3. Journal of Proteome Research. 2010, Dec; 9(12): 6696-6704.
  1. 6.   Topological properties of protein interaction networks from a structural perspective
  2. Gursoy, A.; Keskin, O.; Nussinov, R.
  3. Biochemical Society Transactions. 2008 36: 1398-1403.
  1. 7.   Comprehensive analysis of co-occurring domain sets in yeast proteins
  2. Cohen-Gihon, I.; Nussinov, R.; Sharan, R.
  3. Bmc Genomics. 2007, Jun; 8
  1. 8.   Similar binding sites and different partners: Implications to shared proteins in cellular pathways
  2. Keskin, O.; Nussinov, R.
  3. Structure. 2007, Mar; 15(3): 341-354.
  1. 9.   The contribution of the Trp/Met/Phe residues to physical interactions of p53 with cellular proteins
  2. Ma, B. Y.; Pan, Y. P.; Gunasekaran, K.; Keskin, O.; Venkataraghavan, R. B.; Levine, A. J.; Nussinov, R.
  3. Physical Biology. 2005, JUN; 2(2): S56-S66.
  1. 10.   Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach
  2. Keskin, O.; Ma, B. Y.; Rogale, K.; Gunasekaran, K.; Nussinov, R.
  3. Physical Biology. 2005, JUN; 2(2): S24-S35.
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