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  1. 1.   Affinity Tag-Free Purification of SARS-CoV-2 N Protein and Its Crystal Structure in Complex with ssDNA
  2. Maiti,Atanu; Matsuo,Hiroshi
  3. Biomolecules. 2024, Nov 30; 14(12):
  1. 2.   Kinetic Studies on the Interaction of HIV-1 Gag Protein with the HIV-1 RNA Packaging Signal
  2. Rink,Connie; Kroupa, Tomas; Rein,Alan; Datta,Siddhartha
  3. Viruses. 2024, Sep 25; 16(10): 1517.
  1. 3.   Mapping Extracellular Protein-Protein Interactions Using Extracellular Proximity Labeling (ePL)
  2. Peeney, David; Gurung, Sadeechya; Rich, Joshua A; Coates-Park, Sasha; Liu, Yueqin; Toor, Jack; Jones,Jane; Richie, Christopher T; Jenkins, Lisa M; Stetler-Stevenson, William G
  3. Journal of Proteome Research. 2024, Sep 05;
  1. 4.   Autoinhibition of ubiquitin-specific protease 8: insights into domain interactions and mechanisms of regulation
  2. Caba, Cody; Black, Megan; Liu, Yujue; DaDalt, Ashley A; Mallare, Josh; Fan,Lixin; Harding, Rachel J; Wang, Yunxin; Vacratsis, Panayiotis O; Huang, Rui; Zhuang, Zhihao; Tong, Yufeng
  3. The Journal of Biological Chemistry. 2024, Aug 28; 107727.
  1. 5.   Human Immunodeficiency Virus Type 1 Gag Polyprotein Modulates Membrane Physical Properties like a Surfactant: Potential Implications for Virus Assembly
  2. Denieva, Zaret G; Kuzmin, Peter I; Galimzyanov, Timur R; Datta,Siddhartha; Rein,Alan; Batishchev, Oleg V
  3. ACS Infectious Diseases. 2024, Jun 25;
  1. 6.   K128 ubiquitination constrains RAS activity by expanding its binding interface with GAP proteins
  2. Magits, Wout; Steklov, Mikhail; Jang,Hyunbum; Sewduth, Raj N; Florentin, Amir; Lechat, Benoit; Sheryazdanova, Aidana; Zhang, Mingzhen; Simicek, Michal; Prag, Gali; Nussinov,Ruth; Sablina, Anna
  3. The EMBO Journal. 2024, Jun 10;
  1. 7.   Systematic characterization of multi-omics landscape between gut microbial metabolites and GPCRome in Alzheimer's disease
  2. Qiu, Yunguang; Hou, Yuan; Gohel, Dhruv; Zhou, Yadi; Xu, Jielin; Bykova, Marina; Yang, Yuxin; Leverenz, James B; Pieper, Andrew A; Nussinov,Ruth; Caldwell, Jessica Z K; Brown, J Mark; Cheng, Feixiong
  3. Cell Reports. 2024, Apr 21; 43(5): 114128.
  1. 8.   Multifaceted roles for STAT3 in gammaherpesvirus latency revealed through in vivo B cell knockout models
  2. Hogan, Chad H; Owens, Shana M; Reynoso, Glennys V; Liao, Yifei; Meyer,Thomas; Zelazowska, Monika A; Liu, Bin; Li, Xiaofan; Grosskopf, Anna K; Khairallah, Camille; Kirillov, Varvara; Reich, Nancy C; Sheridan, Brian S; McBride, Kevin M; Gewurz, Benjamin E; Hickman, Heather D; Forrest, J Craig; Krug, Laurie T
  3. mBio. 2024, Jan 03; e0299823.
  1. 9.   Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses
  2. Normandin, Erica; Triana, Sergio; Raju, Siddharth S; Lan, Tammy C T; Lagerborg, Kim; Rudy, Melissa; Adams, Gordon C; DeRuff, Katherine C; Logue, James; Liu, David; Strebinger, Daniel; Rao, Arya; Messer, Katelyn S; Sacks, Molly; Adams, Ricky D; Janosko, Krisztina; Kotliar, Dylan; Shah, Rickey; Crozier,Ian; Rinn, John L; Melé, Marta; Honko, Anna N; Zhang, Feng; Babadi, Mehrtash; Luban, Jeremy; Bennett, Richard S; Shalek, Alex K; Barkas, Nikolaos; Lin, Aaron E; Hensley, Lisa E; Sabeti, Pardis C; Siddle, Katherine J
  3. Cell Genomics. 2023, Dec 13; 3(12): 100440.
  1. 10.   Joint associations between established genetic susceptibility loci, pesticide exposures, and risk of prostate cancer
  2. Hurwitz, Lauren M; Beane Freeman, Laura E; Andreotti, Gabriella; Hofmann, Jonathan N; Parks, Christine G; Sandler, Dale P; Lubin, Jay H; Liu,Jia; Jones,Kristine; Berndt, Sonja I; Koutros, Stella
  3. Environmental Research. 2023, Nov 15; 237(Pt 2): 117063.
  1. 11.   Delineation of functional subdomains of Huntingtin protein and their interaction with HAP40
  2. Alteen, Matthew G; Deme,Justin; Alvarez, Claudia P; Loppnau, Peter; Hutchinson, Ashley; Seitova, Alma; Chandrasekaran, Renu; Silva Ramos, Eduardo; Secker, Christopher; Alqazzaz, Mona; Wanker, Erich E; Lea, Susan M; Arrowsmith, Cheryl H; Harding, Rachel J
  3. Structure (London, England : 1993). 2023, Sep 7; 31
  1. 12.   Genome-wide Association Study of Bladder Cancer Reveals New Biological and Translational Insights
  2. Koutros, Stella; Kiemeney, Lambertus A; Pal Choudhury, Parichoy; Milne, Roger L; Lopez de Maturana, Evangelina; Ye, Yuanqing; Joseph, Vijai; Florez-Vargas, Oscar; Dyrskjøt, Lars; Figueroa, Jonine; Dutta, Diptavo; Giles, Graham G; Hildebrandt, Michelle A T; Offit, Kenneth; Kogevinas, Manolis; Weiderpass, Elisabete; McCullough, Marjorie L; Freedman, Neal D; Albanes, Demetrius; Kooperberg, Charles; Cortessis, Victoria K; Karagas, Margaret R; Johnson, Alison; Schwenn, Molly R; Baris, Dalsu; Furberg, Helena; Bajorin, Dean F; Cussenot, Olivier; Cancel-Tassin, Geraldine; Benhamou, Simone; Kraft, Peter; Porru, Stefano; Carta, Angela; Bishop, Timothy; Southey, Melissa C; Matullo, Giuseppe; Fletcher, Tony; Kumar, Rajiv; Taylor, Jack A; Lamy, Philippe; Prip, Frederik; Kalisz, Mark; Weinstein, Stephanie J; Hengstler, Jan G; Selinski, Silvia; Harland, Mark; Teo, Mark; Kiltie, Anne E; Tardón, Adonina; Serra, Consol; Carrato, Alfredo; García-Closas, Reina; Lloreta, Josep; Schned, Alan; Lenz,Petra; Riboli, Elio; Brennan, Paul; Tjønneland, Anne; Otto, Thomas; Ovsiannikov, Daniel; Volkert, Frank; Vermeulen, Sita H; Aben, Katja K; Galesloot, Tessel E; Turman, Constance; De Vivo, Immaculata; Giovannucci, Edward; Hunter, David J; Hohensee, Chancellor; Hunt, Rebecca; Patel, Alpa V; Huang, Wen-Yi; Thorleifsson, Gudmar; Gago-Dominguez, Manuela; Amiano, Pilar; Golka, Klaus; Stern, Mariana C; Yan, Wusheng; Liu,Jia; Li,Shengchao; Katta,Shilpa; Hutchinson,Amy; Hicks,Belynda; Wheeler, William A; Purdue, Mark P; McGlynn, Katherine A; Kitahara, Cari M; Haiman, Christopher A; Greene, Mark H; Rafnar, Thorunn; Chatterjee, Nilanjan; Chanock, Stephen J; Wu, Xifeng; Real, Francisco X; Silverman, Debra T; Garcia-Closas, Montserrat; Stefansson, Kari; Prokunina-Olsson, Ludmila; Malats, Núria; Rothman, Nathaniel
  3. European Urology. 2023, Jul; 48(1): 127-137.
  1. 13.   Imaging the cellular response to an antigen tagged interstrand crosslinking agent
  2. Bellani, Marina A; Huang, Jing; Zhang, Jing; Gali,Himabindu; Thazhathveetil, Arun Kalliat; Pokharel, Durga; Majumdar, Ishani; Shaik, Althaf; Seidman, Michael M
  3. DNA Repair. 2023, Jun 09; 128: 103525.
  1. 14.   Reproducibility metrics for context-specific CRISPR screens
  2. Billmann, Maximilian; Ward, Henry N; Aregger,Michael; Costanzo, Michael; Andrews, Brenda J; Boone, Charles; Moffat, Jason; Myers, Chad L
  3. Cell Systems. 2023, May 17; 14(5): 418-422.e2.
  1. 15.   Targeted long-read sequencing of the Ewing sarcoma 6p25.1 susceptibility locus identifies germline-somatic interactions with EWSR1-FLI1 binding
  2. Lee, Olivia W; Rodrigues, Calvin; Lin, Shu-Hong; Luo,Wen; Jones,Kristine; Brown, Derek W; Zhou,Weiyin; Karlins, Eric; Khan, Sairah M; Baulande, Sylvain; Raynal, Virginie; Surdez, Didier; Reynaud, Stephanie; Rubio, Rebeca Alba; Zaidi, Sakina; Grossetête, Sandrine; Ballet, Stelly; Lapouble, Eve; Laurence, Valérie; Pierron, Gaelle; Gaspar, Nathalie; Corradini, Nadège; Marec-Bérard, Perrine; Rothman, Nathaniel; Dagnall, Casey L; Burdett, Laurie; Manning, Michelle; Wyatt, Kathleen; Yeager, Meredith; Chari,Raj; Leisenring, Wendy M; Kulozik, Andreas E; Kriebel, Jennifer; Meitinger, Thomas; Strauch, Konstantin; Kirchner, Thomas; Dirksen, Uta; Mirabello, Lisa; Tucker, Margaret A; Tirode, Franck; Armstrong, Gregory T; Bhatia, Smita; Robison, Leslie L; Yasui, Yutaka; Romero-Pérez, Laura; Hartmann, Wolfgang; Metzler, Markus; Diver, W Ryan; Lori, Adriana; Freedman, Neal D; Hoover, Robert N; Morton, Lindsay M; Chanock, Stephen J; Grünewald, Thomas G P; Delattre, Olivier; Machiela, Mitchell J
  3. American Journal of Human Genetics. 2023, Mar 2; 110(3): 427-441.
  1. 16.   Cross-linking mass spectrometry for mapping protein complex topologies in situ
  2. Lee,Kitaik; O'Reilly,Francis
  3. Essays in Biochemistry. 2023, Feb 03;
  1. 17.   Structural basis for cell type specific DNA binding of C/EBPß: the case of cell cycle inhibitor p15INK4b promoter
  2. Lountos, George T; Cherry, Scott; Tropea, Joseph E; Wlodawer, Alexander; Miller, Maria
  3. Journal of Structural Biology. 2022, Nov 04; 214(4): 107918.
  1. 18.   Associations between APOL1 genetic variants and blood pressure in African American mothers and children from a U.S. pregnancy cohort: Modification by air pollution exposures
  2. Ni, Yu; Simpson, Claire L; Davis, Robert L; Szpiro, Adam A; Karr, Catherine J; Kovesdy, Csaba P; Hjorten, Rebecca C; Tylavsky, Frances A; Bush, Nicole R; LeWinn, Kaja Z; Winkler,Cheryl; Kopp, Jeffrey B; Obi, Yoshitsugu
  3. Environmental Research. 2022, Mar 28; 212
  1. 19.   Spatial and Functional Organization of Human Papillomavirus Replication Foci in the Productive Stage of Infection
  2. Khurana, Simran; Markowitz,Tovah; Kabat, Juraj; McBride, Alison A
  3. mBio. 2021, Dec 21; 12(6): e0268421.
  1. 20.   The tumor suppressor activity of DLC1 requires the interaction of its START domain with Phosphatidylserine, PLCD1, and Caveolin-1
  2. Sanchez-Solana, Beatriz; Wang, Dunrui; Qian, Xiaolan; Velayoudame, Parthibane; Simanshu,Dhirendra; Acharya,Jairaj; Lowy, Douglas R
  3. Molecular Cancer. 2021, Nov 02; 20(1):
  1. 21.   Analysis of combinatorial CRISPR screens with the Orthrus scoring pipeline
  2. Ward, Henry N.; Aregger,Michael; Gonatopoulos Pournatzis,Thomas; Billmann, Maximilian; Ohsumi, Toshiro K.; Brown, Kevin R.; Blencowe, Benjamin J.; Moffat, Jason; Myers, Chad L.
  3. Nature protocols. 2021, Oct; 16(10): 4766-4798.
  1. 22.   Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI
  2. Li,Mi; Srp, Jaroslav; Mares, Michael; Wlodawer,Alexander; Gustchina,Alla
  3. Acta crystallographica. Section D, Structural biology. 2021, Aug 1; 77(Pt 8): 1084-1098.
  1. 23.   Sub-multiplicative interaction between polygenic risk score and household coal use in relation to lung adenocarcinoma among never-smoking women in Asia
  2. Blechter, Batel; Wong, Jason Y. Y.; Hsiung, Chao Agnes; Hosgood, H. Dean; Yin, Zhihua; Shu, Xiao-Ou; Zhang, Han; Shi, Jianxin; Song, Lei; Song, Minsun; Zheng, Wei; Wang, Zhaoming; Caporaso, Neil; Burdette, Laurie; Yeager, Meredith; Berndt, Sonja I.; Landi, Maria Teresa; Chen, Chien-Jen; Chang, Gee-Chen; Hsiao, Chin-Fu; Tsai, Ying-Huang; Chen, Kuan-Yu; Huang, Ming-Shyan; Su, Wu-Chou; Chen, Yuh-Min; Chien, Li-Hsin; Chen, Chung-Hsing; Yang, Tsung-Ying; Wang, Chih-Liang; Hung, Jen-Yu; Lin, Chien-Chung; Perng, Reury-Perng; Chen, Chih-Yi; Chen, Kun-Chieh; Li, Yao-Jen; Yu, Chong-Jen; Chen, Yi-Song; Chen, Ying-Hsiang; Tsai, Fang-Yu; Seow, Wei Jie; Bassig, Bryan A.; Hu, Wei; Ji, Bu-Tian; Wu, Wei; Guan, Peng; He, Qincheng; Gao, Yu-Tang; Cai, Qiuyin; Chow, Wong-Ho; Xiang, Yong-Bing; Lin, Dongxin; Wu, Chen; Wu, Yi-Long; Shin, Min-Ho; Hong, Yun-Chul; Matsuo, Keitaro; Chen, Kexin; Wong, Maria Pik; Lu, Daru; Jin, Li; Wang, Jiu-Cun; Seow, Adeline; Wu, Tangchun; Shen, Hongbing; Fraumeni, Joseph F.; Yang, Pan-Chyr; Chang, I-Shou; Zhou, Baosen; Chanock, Stephen J.; Rothman, Nathaniel; Chatterjee, Nilanjan; Lan, Qing
  3. Environment International. 2021, Feb; 147
  1. 24.   My personal mutanome: a computational genomic medicine platform for searching network perturbing alleles linking genotype to phenotype
  2. Zhou, Yadi; Zhao, Junfei; Fang, Jiansong; Martin, William; Li, Lang; Nussinov,Ruth; Chan, Timothy A.; Eng, Charis; Cheng, Feixiong
  3. Genome Biology. 2021, Jan 29; 22(1):
  1. 25.   How to package the RNA of HIV-1
  2. Kleinpeter,Alex; Freed,Eric
  3. eLife. 2020, Nov 17; 9: pii: e63585.
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