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  1. 1.   TRAIL induces cytokine production via the NFkB2 pathway promoting neutrophil chemotaxis and neutrophil-mediated immune-suppression in triple negative breast cancer cells
  2. Kundu, Manjari; Greer, Yoshimi E; Lobanov, Alexei; Ridnour, Lisa; Donahue, Renee N; Ng, Yeap; Ratnayake, Shashi; White, Karley; Voeller, Donna; Weltz, Sarah; Chen, Qingrong; Lockett,Stephen; Cam, Maggie; Meerzaman, Daoud; Wink, David A; Weigert, Roberto; Lipkowitz, Stanley
  3. Cancer Letters. 2025, Jun 28; 620: 217692.
  1. 2.   Distinct allosteric networks in CDK4 and CDK6 in the cell cycle and in drug resistance
  2. Zhang,Wengang; Bradburn, Devin; Heidebrink, Gretchen; Liu, Yonglan; Jang,Hyunbum; Nussinov,Ruth; Kõivomägi, Mardo
  3. Journal of Molecular Biology. 2025, Mar 31; 169121.
  1. 3.   Natural Killer Cell Receptors and Ligands Are Associated With Markers of HIV-1 Persistence in Chronically Infected ART Suppressed Patients
  2. Ivison, Geoffrey T; Vendrame, Elena; Martínez-Colón, Giovanny J; Ranganath, Thanmayi; Vergara, Rosemary; Zhao, Nancy Q; Martin,Pat; Bendall, Sean C; Carrington,Mary; Cyktor, Joshua C; McMahon, Deborah K; Eron, Joseph; Jones, R Brad; Mellors, John W; Bosch, Ronald J; Gandhi, Rajesh T; Holmes, Susan; Blish, Catherine A
  3. Frontiers in Cellular and Infection Microbiology. 2022 12: 757846.
  1. 4.   A practical guide to large-scale docking
  2. Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius,Trent; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K.
  3. Nature protocols. 2021, Oct; 16(10): 4799-4832.
  1. 5.   The conserved C2 phospholipid-binding domain in Delta contributes to robust Notch signalling
  2. Martins, Torcato; Meng, Yao; Korona, Boguslawa; Suckling, Richard; Johnson, Steven; Handford, Penny A.; Lea,Susan; Bray, Sarah J.
  3. EMBO REPORTS. 2021, Aug 4;
  1. 6.   Combined haploidentical and cord blood transplantation for refractory severe aplastic anaemia and hypoplastic myelodysplastic syndrome
  2. Childs, Richard W; Tian, Xin; Vo, Phuong; Purev, Enkhtsetseg; Kotecha, Ritesh R; Carlsten, Mattias; Clara, Joseph; Flegel, Willy A; Adams, Sharon D; Khuu, Hanh M; Stroncek, David F; Cook, Lisa; Worthy, Tat'yana; Geller, Nancy L; Wells, Brian; Wilder,Jennifer; Reger, Robert; Aue, Georg
  3. British Journal of Haematology. 2021, May 15; 193(5): 951-960.
  1. 7.   Crystallographic models of SARS-CoV-2 3CL(pro): in-death assessment of structure quality and validation
  2. Jaskolski, Mariusz; Dauter, Zbigniew; Shabalin, Ivan G.; Gilski, Miroslaw; Brzezinski, Dariusz; Kowiel, Marcin; Rupp, Bernhard; Wlodawer,Alexander
  3. IUCrJ. 2021, Feb 9; 8(Pt 2): 238-256.
  1. 8.   Ischemia reperfusion-induced metastasis is resistant to PPAR? agonist pioglitazone in a murine model of colon cancer
  2. Tashiro, Yoshihiko; Nishino, Hiroto; Higuchi, Takashi; Sugisawa, Norihiko; Fukuda, Yasunari; Yamamoto, Jun; Inubushi, Sachiko; Aoki, Takeshi; Murakami, Masahiko; Singh,Shree Ram; Bouvet, Michael; Hoffman, Robert M
  3. Scientific reports. 2020, Oct 29; 10(1): 18565.
  1. 9.   Covid-19.bioreproducibility.org: A web resource for SARS-CoV-2-related structural models
  2. Brzezinski, Dariusz; Kowiel, Marcin; Cooper, David R; Cymborowski, Marcin; Grabowski, Marek; Wlodawer,Alexander; Dauter,Zbigniew; Shabalin, Ivan G; Gilski, Miroslaw; Rupp, Bernhard; Jaskolski, Mariusz; Minor, Wladek
  3. Protein science : a publication of the Protein Society. 2020, OCT 8;
  1. 10.   Custom G4 Microarrays Reveal Selective G-Quadruplex Recognition of Small Molecule BMVC: A Large-Scale Assessment of Ligand Binding Selectivity
  2. Wu, Guanhui; Tillo, Desiree; Ray, Sreejana; Chang, Ta-Chau; Schneekloth,Jay; Vinson, Charles; Yang, Danzhou
  3. Molecules (Basel, Switzerland). 2020, AUG; 25(15): pii: E3465.
  1. 11.   Ligand-centered assessment of SARS-CoV-2 drug target models in the Protein Data Bank
  2. Wlodawer,Alexander; Dauter,Zbigniew; Shabalin, Ivan; Gilski, Miroslaw; Brzezinski, Dariusz; Kowiel, Marcin; Minor, Wladek; Rupp, Bernhard; Jaskolski, Mariusz
  3. The FEBS journal. 2020, JUN 24;
  1. 12.   High-efficiency enrichment enables identification of aptamers to circulating Plasmodium falciparum-infected erythrocytes
  2. Oteng, Eugene K; Gu, Wenjuan; McKeague, Maureen
  3. Scientific reports. 2020, Jun 16; 10(1): 9706.
  1. 13.   Plasmacytoid dendritic cells sense HIV replication before detectable viremia following treatment interruption
  2. Mitchell, Julie L.; Takata, Hiroshi; Muir, Roshell; Colby, Donn J.; Kroon, Eugene; Crowell, Trevor A.; Sacdalan, Carlo; Pinyakorn, Suteeraporn; Puttamaswin, Suwanna; Benjapornpong, Khunthalee; Trichavaroj, Rapee; Tressler, Randall L.; Fox, Lawrence; Polonis, Victoria R.; Bolton, Diane L.; Maldarelli,Frank; Lewin, Sharon R.; Haddad, Elias K.; Phanuphak, Praphan; Robb, Merlin L.; Michael, Nelson L.; de Souza, Mark; Phanuphak, Nittaya; Ananworanich, Jintanat; Trautmann, Lydie
  3. JOURNAL OF CLINICAL INVESTIGATION. 2020, JUN 1; 130(6): 2845-2858.
  1. 14.   Modeling ligand docking to RNA in the design of RNA-based nanostructures
  2. Kasprzak,Wojciech; Ahmed, Nour Ali; Shapiro,Bruce
  3. Current opinion in biotechnology. 2020, JUN; 63: 16-25.
  1. 15.   In-vivo tracking of adoptively transferred natural killer-cells in rhesus macaques using 89Zirconium-oxine cell labeling and PET imaging
  2. Sato, Noriko; Stringaris, Kate; Davidson-Moncada, Jan K; Reger, Robert; Adler,Stephen; Dunbar, Cynthia; Choyke, Peter L; Childs, Richard W
  3. Clinical cancer research : an official journal of the American Association for Cancer Research. 2020, JUN 1; 26(11): 2573-2581.
  1. 16.   High-Affinity Interactions of the nSH3/cSH3 Domains of Grb2 with the C-Terminal Proline-Rich Domain of SOS1
  2. Liao,Tsung-Jen; Jang,Hyunbum; Nussinov,Ruth; Fushman, David
  3. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2020, Feb 19; 142: 3401-3411.
  1. 17.   Improving (Q)SAR predictions by examining bias in the selection of compounds for experimental testing
  2. Pogodin, P V; Lagunin, A A; Filimonov, D A; Nicklaus,Marc; Poroikov, V V
  3. SAR and QSAR in environmental research. 2019, OCT 3; 30(10): 759-773.
  1. 18.   Using SHAPE-MaP to probe small molecule-RNA interactions
  2. Martin, Sarah; Blankenship, Carson; Rausch,Jason; Sztuba-Solinska, Joanna
  3. Methods (San Diego, Calif.). 2019, SEP 1; 167: 105-116.
  1. 19.   Emerging Allosteric Mechanism of EGFR Activation in Physiological and Pathological Contexts
  2. Tsai,Chung-Jung; Nussinov,Ruth
  3. Biophysical journal. 2019, Jul 9; 117(1): 5-13.
  1. 20.   Chemotactic Ligands that Activate G-Protein-Coupled Formylpeptide Receptors
  2. Krepel,Stacey; Wang,Jiming
  3. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2019, Jul; 20(14):
  1. 21.   IL-22 and its receptors are increased in human and experimental COPD and contribute to pathogenesis
  2. Starkey, Malcolm R; Plank, Maximilian W; Casolari, Paolo; Papi, Alberto; Pavlidis, Stelios; Guo, Yike; Cameron, Guy J M; Haw, Tatt Jhong; Tam, Anthony; Obiedat, Ma'en; Donovan, Chantal; Hansbro, Nicole G; Nguyen, Duc H; Nair, Prema Mono; Kim, Richard Y; Horvat, Jay C; Kaiko, Gerard E; Durum,Scott; Wark, Peter A; Sin, Don D; Caramori, Gaetano; Adcock, Ian M; Foster, Paul S; Hansbro, Philip M
  3. The European respiratory journal. 2019, JUL 1; 54(1): pii: 1800174..
  1. 22.   Evidence for ligandable sites in structured RNA throughout the Protein Data Bank
  2. Hewitt, William M.; Calabrese,Dave; Schneekloth,Jay
  3. BIOORGANIC & MEDICINAL CHEMISTRY. 2019, Jun 1; 27(11): 2253-2260.
  1. 23.   Allostery in Its Many Disguises: From Theory to Applications
  2. Wodak, Shoshana J.; Paci, Emanuele; Dokholyan, Nikolay; Berezovsky, Igor N.; Horovitz, Amnon; Li, Jing; Hilser, Vincent J.; Behar, Ivet; Karanicolas, John; Stock, Gerhard; Hamm, Peter; Stote, Roland H.; Eberhardt, Jerome; Chebaro, Yassmine; Dejaegere, Annick; Cecchini, Marco; Changeux, Jean-Pierre; Bolhuis, Peter G.; Vreede, Jocelyne; Faccioli, Pietro; Orioli, Simone; Ravasio, Riccardo; Yen, Le; Brito, Carolina; Wyart, Matthieu; Gkeka, Paraskevi; Rivalta, Ivan; Palermo, Giulia; Mccammon, J. Andrew; Panecka-Hofman, Joanna; Wade, Rebecca C.; Di Pizio, Antonella; Niv, Masha Y.; Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum; Padhorny, Dzmitry; Kozakov, Dima; Mcleish, Tom
  3. Structure (London, England : 1993). 2019, Apr 2; 27(4): 566-578.
  1. 24.   Selective Small-Molecule Targeting of a Triple Helix Encoded by the Long Noncoding RNA, MALAT1
  2. Abulwerdi,Fardokht; Xu, Wenbo; Ageeli, Abeer A.; Yonkunas, Michael J.; Arun, Gayatri; Nam, Hyeyeon; Schneekloth,Jay; Dayie, Theodore Kwaku; Spector, David; Baird, Nathan; Le Grice,Stuart
  3. ACS CHEMICAL BIOLOGY. 2019, Feb; 14(2): 223-235.
  1. 25.   Chemical and structural studies provide a mechanistic basis for recognition of the MYC G-quadruplex
  2. Calabrese,Dave; Chen,Xiang; Leon, Elena C.; Gaikwad, Snehal M.; Phyo, Zaw; Hewitt, William M.; Alden, Stephanie; Hilimire, Thomas A.; He, Fahu; Michalowski, Aleksandra M.; Simmons, John K.; Saunders, Lindsey B.; Zhang, Shuling; Connors, Daniel; Walters,Kylie; Mock, Beverly A.; Schneekloth,Jay
  3. NATURE COMMUNICATIONS. 2018, Oct 12; 9(1): 4229.
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