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  1. 1.   A practical guide to large-scale docking
  2. Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius,Trent; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K.
  3. Nature protocols. 2021, Oct; 16(10): 4799-4832.
  1. 2.   Software and resources for computational medicinal chemistry
  2. Liao, C. Z.; Sitzmann, M.; Pugliese, A.; Nicklaus, M. C.
  3. Future Medicinal Chemistry. 2011, Jun; 3(8): 1057-1085.
  1. 3.   Fiber Dock: Flexible induced-fit backbone refinement in molecular docking
  2. Mashiach, E.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2010, May; 78(6): 1503-1519.
  1. 4.   HingeProt: Automated prediction of hinges in protein structures
  2. Emekli, U.; Schneidman-Duhovny, D.; Wolfson, H. J.; Nussinov, R.; Haliloglu, T.
  3. Proteins-Structure Function and Bioinformatics. 2008 70(4): 1219-1227.
  1. 5.   Automatic prediction of protein interactions with large scale motion
  2. Schneidman-Duhovny, D.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2007, Dec; 69(4): 764-773.
  1. 6.   Homology model of RSK2 N-terminal kinase domain, structure-based identification of novel RSK2 inhibitors, and preliminary common pharmacophore
  2. Nguyen, T. L.; Gussio, R.; Smith, J. A.; Lannigan, D. A.; Hecht, S. M.; Scudiero, D. A.; Shoemaker, R. H.; Zaharevitz, D. W.
  3. Bioorganic & Medicinal Chemistry. 2006, Sep; 14(17): 6097-6105.
  1. 7.   Predicting molecular interactions in silico: II. Protein- protein and protein-drug docking
  2. Schneidman-Duhovny, D.; Nussinov, R.; Wolfson, H. J.
  3. Current Medicinal Chemistry. 2004 11(1): 91-107.
  1. 8.   Principles of docking: An overview of search algorithms and a guide to scoring functions
  2. Halperin, I.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Proteins-Structure Function and Genetics. 2002 47(4): 409-443.
  1. 9.   Flexible Docking Allowing Induced Fit in Proteins - Insights From an Open to Closed Conformational Isomers
  2. Sandak, B.; Wolfson, H. J.; Nussinov, R.
  3. Proteins-Structure Function and Genetics. 1998 32(2): 159-174.
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