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  1. 1.   DOCK 6: Incorporating hierarchical traversal through precomputed ligand conformations to enable large-scale docking
  2. Balius,Trent; Tan, Y Stanley; Chakrabarti,Mayukh
  3. Journal of Computational Chemistry. 2023, Sep 25;
  1. 2.   Exploration of Ultralarge Compound Collections for Drug Discovery
  2. Warr, Wendy A; Nicklaus,Marc; Nicolaou, Christos A; Rarey, Matthias
  3. Journal of Chemical Information and Modeling. 2022, Apr 14;
  1. 3.   The mechanism driving a solid-solid phase transition in a biomacromolecular crystal
  2. Ramakrishnan, Saminathan; Stagno,Jason; Heinz,Will; Zuo, Xiaobing; Yu,Ping; Wang,Yun-Xing
  3. IUCrJ. 2021, Jul 01; 8(Pt 4): 655-664.
  1. 4.   Genome-wide Screens Identify Lineage- and Tumor-Specific Genes Modulating MHC-I- and MHC-II-Restricted Immunosurveillance of Human Lymphomas
  2. Dersh, Devin; Phelan, James D; Gumina, Megan E; Wang, Boya; Arbuckle, Jesse H; Holly, Jaroslav; Kishton, Rigel J; Markowitz,Tovah; Seedhom, Mina O; Fridlyand, Nathan; Wright, George W; Huang, Da Wei; Ceribelli, Michele; Thomas, Craig J; Lack,Justin; Restifo, Nicholas P; Kristie, Thomas M; Staudt, Louis M; Yewdell, Jonathan W
  3. Immunity. 2021, Jan 12; 54(1): 116-131.e10.
  1. 5.   Genome-wide homozygosity and risk of four non-Hodgkin lymphoma subtypes
  2. Moore, Amy; Machiela, Mitchell J; Machado, Moara; Wang, Sophia S; Kane, Eleanor; Slager, Susan L; Zhou, Weiyin; Carrington,Mary; Lan, Qing; Milne, Roger L; Birmann, Brenda M; Adami, Hans-Olov; Albanes, Demetrius; Arslan, Alan A; Becker, Nikolaus; Benavente, Yolanda; Bisanzi, Simonetta; Boffetta, Paolo; Bracci, Paige M; Brennan, Paul; Brooks-Wilson, Angela R; Canzian, Federico; Caporaso, Neil; Clavel, Jacqueline; Cocco, Pierluigi; Conde, Lucia; Cox, David G; Cozen, Wendy; Curtin, Karen; De Vivo, Immaculata; de Sanjose, Silvia; Foretova, Lenka; Gapstur, Susan M; Ghesquières, Hervè; Giles, Graham G; Glenn, Martha; Glimelius, Bengt; Gao, Chi; Habermann, Thomas M; Hjalgrim, Henrik; Jackson, Rebecca D; Liebow, Mark; Link, Brian K; Maynadie, Marc; McKay, James; Melbye, Mads; Miligi, Lucia; Molina, Thierry J; Monnereau, Alain; Nieters, Alexandra; North, Kari E; Offit, Kenneth; Patel, Alpa V; Piro, Sara; Ravichandran, Vignesh; Riboli, Elio; Salles, Gilles; Severson, Richard K; Skibola, Christine F; Smedby, Karin E; Southey, Melissa C; Spinelli, John J; Staines, Anthony; Stewart, Carolyn; Teras, Lauren R; Tinker, Lesley F; Travis, Ruth C; Vajdic, Claire M; Vermeulen, Roel C H; Vijai, Joseph; Weiderpass, Elisabete; Weinstein, Stephanie; Doo, Nicole Wong; Zhang, Yawei; Zheng, Tongzhang; Chanock, Stephen J; Rothman, Nathaniel; Cerhan, James R; Dean,Michael; Camp, Nicola J; Yeager,Meredith; Berndt, Sonja I
  3. Journal of translational genetics and genomics. 2021 5: 200-217.
  1. 6.   IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts
  2. Shen, Xiaomeng; Shen, Shichen; Li, Jun; Hu, Qiang; Nie, Lei; Tu, Chengjian; Wang, Xue; Poulsen, David J; Orsburn, Ben; Wang, Jianmin; Qu, Jun
  3. Proceedings of the National Academy of Sciences of the United States of America. 2018, May 22; 115(21): E4767-E4776.
  1. 7.   Scalable, cGMP-compatible purification of extracellular vesicles carrying bioactive human heterodimeric IL-15/lactadherin complexes
  2. Watson, Dennis; Yung, Bryant C; Bergamaschi, Cristina; Chowdhury, Bhabadeb; Bear, Jenifer; Stellas, Dimitrios; Morales-Kastresana, Aizea; Jones, Jennifer C; Felber, Barbara; Chen, Xiaoyuan; Pavlakis, George
  3. Journal of Extracellular Vesicles. 2018, Feb 28; 7(1): 1442088.
  1. 8.   Gene regulation and suppression of type I interferon signaling by STAT3 in diffuse large B cell lymphoma
  2. Lu, Li; Zhu, Fen; Zhang, Meili; Li, Yangguang; Drennan, Amanda C; Kimpara, Shuichi; Rumball, Ian; Selzer, Christopher; Cameron, Hunter; Kellicut, Ashley; Kelm, Amanda; Wang, Fangyu; Waldmann, Thomas A; Rui, Lixin
  3. Proceedings of the National Academy of Sciences of the United States of America. 2018, Jan 16; 115(3): E498-E505.
  1. 9.   An overview of enzymatic reagents for the removal of affinity tags
  2. Waugh, D. S.
  3. Protein Expression and Purification. 2011, Dec; 80(2): 283-293.
  1. 10.   A novel role for IL-22R1 as a driver of inflammation
  2. Savan, R.; McFarl, A. P.; Reynolds, D. A.; Feigenbaum, L.; Ramakrishnan, K.; Karwan, M.; Shirota, H.; Klinman, D. M.; Dunleavy, K.; Pittaluga, S.; Anderson, S. K.; Donnelly, R. P.; Wilson, W. H.; Young, H. A.
  3. Blood. 2011, Jan; 117(2): 575-584.
  1. 11.   The fraction of RNA that folds into the correct branched secondary structure determines hepatitis delta virus type 3 RNA editing levels
  2. Linnstaedt, S. D.; Kasprzak, W. K.; Shapiro, B. A.; Casey, J. L.
  3. Rna-a Publication of the Rna Society. 2009 15(6): 1177-1187.
  1. 12.   Automatic prediction of protein interactions with large scale motion
  2. Schneidman-Duhovny, D.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2007, Dec; 69(4): 764-773.
  1. 13.   Phosphoproteornics for the discovery of kinases as cancer biornarkers and drug targets
  2. Yu, L. R.; Issaq, H. J.; Veenstra, T. D.
  3. Proteomics Clinical Applications. 2007, Sep; 1(9): 1042-1057.
  1. 14.   Effective therapy of murine models of human leukemia and lymphoma with radiolabeled anti-CD30 antibody, HeFi-1
  2. Zhang, M. L.; Yao, Z. S.; Patel, H.; Garmestani, K.; Zhang, Z.; Talanov, V. S.; Plascjak, P. S.; Goldman, C. K.; Janik, J. E.; Brechbiel, M. W.; Waldmann, T. A.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2007, May; 104(20): 8444-8448.
  1. 15.   NKX3.1 homeodomain protein binds to topoisomerase I and enhances its activity
  2. Bowen, C.; Stuart, A.; Ju, J. H.; Tuan, J.; Blonder, J.; Conrads, T. P.; Veenstra, T. D.; Gelmann, E. P.
  3. Cancer Research. 2007, Jan; 67(2): 455-464.
  1. 16.   KIR and disease: a model system or system of models?
  2. Khakoo, S. I.; Carrington, M.
  3. Immunological Reviews. 2006, Dec; 214: 186-201.
  1. 17.   Structure of severe acute respiratory syndrome coronavirus receptor-binding domain complexed with neutralizing antibody
  2. Prabakaran, P.; Gan, J. H.; Feng, Y.; Zhu, Z. Y.; Choudhry, V.; Xiao, X. D.; Ji, X. H.; Dimitrov, D. S.
  3. Journal of Biological Chemistry. 2006, JUN 9; 281(23): 15829-15836.
  1. 18.   Recombinant production of anti-HIV protein, griffithsin, by auto-induction in a fermentor culture
  2. Giomarelli, B.; Schumacher, K. M.; Taylor, T. E.; Sowder, R. C.; Hartley, J. L.; McMahon, J. B.; Mori, T.
  3. Protein Expression and Purification. 2006, MAY; 47(1): 194-202.
  1. 19.   Natural products from marine invertebrates and microbes as modulators of antitumor targets
  2. Newman, D. J.; Cragg, G. M.
  3. Current Drug Targets. 2006, MAR; 7(3): 279-304.
  1. 20.   Transcriptomic response to differentiation induction
  2. Patton, G. W.; Stephens, R.; Sidorov, I. A.; Xiao, X.; Lempicki, R. A.; Dimitrov, D. S.; Shoemaker, R. H.; Tudor, G.
  3. Bmc Bioinformatics. 2006, FEB 17; 7
  1. 21.   The novel DNA methylation inhibitor zebularine is effective against the development of murine T-cell lymphoma
  2. Herranz, M.; Martin-Caballero, J.; Fraga, M. F.; Ruiz-Cabello, J.; Flores, J. M.; Desco, M.; Marquez, V.; Esteller, M.
  3. Blood. 2006, FEB 1; 107(3): 1174-1177.
  1. 22.   WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data
  2. Yi, M.; Horton, J. D.; Cohen, J. C.; Hobbs, H. H.; Stephens, R. M.
  3. Bmc Bioinformatics. 2006, JAN 19; 7
  1. 23.   Parkinson's disease alpha-synuclein transgenic mice develop neuronal mitochondrial degeneration and cell death
  2. Martin, L. J.; Pan, Y.; Price, A. C.; Sterling, W.; Copeland, N. G.; Jenkins, N. A.; Price, D. L.; Lee, M. K.
  3. Journal of Neuroscience. 2006, JAN 4; 26(1): 41-50.
  1. 24.   Potent neutralization of Hendra and Nipah viruses by human monoclonal antibodies
  2. Zhu, Z. Y.; Dimitrov, A. S.; Bossart, K. N.; Crameri, G.; Bishop, K. A.; Choudhry, V.; Mungall, B. A.; Feng, Y. R.; Choudhary, A.; Zhang, M. Y.; Feng, Y.; Wang, L. F.; Xiao, X. D.; Eaton, B. T.; Broder, C. C.; Dimitrov, D. S.
  3. Journal of Virology. 2006, JAN; 80(2): 891-899.
  1. 25.   Genetic variation in TNF and IL10 and risk of non-Hodgkin lymphoma: a report from the InterLymph Consortium
  2. Rothman, N.; Skibola, C. F.; Wang, S. S.; Morgan, G.; Lon, Q.; Smith, M. T.; Spinelli, J. J.; Willett, E.; De Sanjose, S.; Cocco, P.; Berndt, S. I.; Brennan, P.; Brooks-Wilson, A.; Wacholder, S.; Becker, N.; Hartge, P.; Zheng, T. Z.; Roman, E.; Holly, E. A.; Boffetta, P.; Armstrong, B.; Cozen, W.; Linet, M.; Bosch, F. X.; Ennas, M. G.; Holford, T. R.; Gallagher, R. P.; Rollinson, S.; Bracci, P. M.; Cerhan, J. R.; Whitby, D.; Moore, P. S.; Leaderer, B.; Lai, A.; Spink, C.; Davis, S.; Bosch, R.; Scarpa, A.; Zhang, Y. W.; Severson, R. K.; Yeager, M.; Chanock, S.; Nieters, A.
  3. Lancet Oncology. 2006, JAN; 7(1): 27-38.
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