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  1. 1.   DOCK 6: Incorporating hierarchical traversal through precomputed ligand conformations to enable large-scale docking
  2. Balius,Trent; Tan, Y Stanley; Chakrabarti,Mayukh
  3. Journal of Computational Chemistry. 2023, Sep 25;
  1. 2.   ZBP1 not RIPK1 mediates tumor necroptosis in breast cancer
  2. Baik, Jin Young; Liu, Zhaoshan; Jiao, Delong; Kwon, Hyung-Joon; Yan, Jiong; Kadigamuwa, Chamila; Choe, Moran; Lake, Ross; Kruhlak, Michael; Tandon,Mayank; Cai, Zhenyu; Choksi, Swati; Liu, Zheng-Gang
  3. Nature communications. 2021, May 11; 12(1):
  1. 3.   Recent developments in animal venom peptide nanotherapeutics with improved selectivity for cancer cells
  2. Giribaldi,Julien; Smith,Jennifer; Schroeder,Christina
  3. Biotechnology advances. 2021, Sep-Oct; 50
  1. 4.   Pyrazole-Based Lactate Dehydrogenase Inhibitors with Optimized Cell Activity and Pharmacokinetic Properties
  2. Rai, Ganesha; Urban, Daniel J.; Mott, Bryan T.; Hu, Xin; Yang, Shyh-Ming; Benavides, Gloria A.; Johnson, Michelle S.; Squadrito, Giuseppe L.; Brimacombe, Kyle R.; Lee, Tobie D.; Cheff, Dorian M.; Zhu, Hu; Henderson, Mark J.; Pohida, Katherine; Sulikowski, Gary A.; Dranow, David M.; Kabir, Md; Shah, Pranav; Padilha, Elias; Tao, Dingyin; Fang, Yuhong; Christov, Plamen P.; Kim, Kwangho; Jana, Somnath; Muttil, Pavan; Anderson, Tamara; Kunda, Nitesh K.; Hathaway, Helen J.; Kusewitt, Donna F.; Oshima, Nobu; Cherukuri, Murali; Davies, Douglas R.; Norenberg, Jeffrey P.; Sklar, Larry A.; Moore, William J.; Dang, Chi; Stott,Gordon; Neckers, Leonard; Flint,Andrew; Darley-Usmar, Victor M.; Simeonov, Anton; Waterson, Alex G.; Jadhav, Ajit; Hall, Matthew D.; Maloney, David J.
  3. JOURNAL OF MEDICINAL CHEMISTRY. 2020, OCT 8; 63(19): 10984-11011.
  1. 5.   Transcriptomic profiling and quantitative high-throughput (qHTS) drug screening of CDH1 deficient hereditary diffuse gastric cancer (HDGC) cells identify treatment leads for familial gastric cancer.
  2. Chen, Ina; Mathews-Greiner, Lesley; Li, Dandan; Abisoye-Ogunniyan, Abisola; Ray, Satyajit; Bian, Yansong; Shukla, Vivek; Zhang, Xiaohu; Guha, Raj; Thomas, Craig; Gryder, Berkley; Zacharia, Athina; Beane, Joal D; Ravichandran, Sarangan; Ferrer, Marc; Rudloff, Udo
  3. Journal of translational medicine. 2017, May 01; 15(1): 92.
  1. 6.   A G beta gamma Effector, ElmoE, Transduces GPCR Signaling to the Actin Network during Chemotaxis
  2. Yan, J. S.; Mihaylov, V.; Xu, X. H.; Brzostowski, J. A.; Li, H. Y.; Liu, L. H.; Veenstra, T. D.; Parent, C. A.; Jin, T.
  3. Developmental Cell. 2012, Jan; 22(1): 92-103.
  1. 7.   A homozygous mutant embryonic stem cell bank applicable for phenotype-driven genetic screening
  2. Horie, K.; Kokubu, C.; Yoshida, J.; Akagi, K.; Isotani, A.; Oshitani, A.; Yusa, K.; Ikeda, R.; Huang, Y.; Bradley, A.; Takeda, J.
  3. Nature Methods. 2011, Dec; 8(12): 1071-+.
  1. 8.   Early life inorganic lead exposure induces testicular teratoma and renal and urinary bladder preneoplasia in adult metallothionein-knockout mice but not in wild type mice
  2. Tokar, E. J.; Diwan, B. A.; Waalkes, M. P.
  3. Toxicology. 2010, Sep; 276(1): 5-10.
  1. 9.   Arylation of Sensitive 1-(Pyrrolidin-1-yl)-diazen-1-ium-diolate in Ionic Liquids
  2. Velazquez, C. A.; Lynn, G. M.; Kumar, V.; Keefer, L. K.; Malhotra, S. V.
  3. Synthetic Communications. 2010, Apr 7; 40(9): 1322-1332.
  1. 10.   Mechanism of sequence-specific pausing of bacterial RNA polymerase
  2. Kireeva, M. L.; Kashlev, M.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2009 106(22): 8900-8905.
  1. 11.   The Nitric Oxide Prodrug JS-K and Its Structural Analogues as Cancer Therapeutic Agents
  2. Maciag, A. E.; Saavedra, J. E.; Chakrapani, H.
  3. Anti-cancer agents in medicinal chemistry. 2009 9(7): 798-803.
  1. 12.   Potential Role of alpha-Synuclein and Metallothionein in Lead-Induced Inclusion Body Formation
  2. Zuo, P. J.; Qu, W.; Cooper, R. N.; Goyer, R. A.; Diwan, B. A.; Waalkes, M. P.
  3. Toxicological Sciences. 2009 111(1): 100-108.
  1. 13.   Aryl Bis(diazeniumdiolates): Potent Inducers of S-Glutathionylation of Cellular Proteins and Their in Vitro Antiproliferative Activities
  2. Andrei, D.; Maciag, A. E.; Chakrapani, H.; Citro, M. L.; Keefer, L. K.; Saavedra, J. E.
  3. Journal of Medicinal Chemistry. 2008 51(24): 7944-7952.
  1. 14.   Synthesis, mechanistic studies, and anti-proliferative activity of glutathione/glutathione S-transferase-activated nitric oxide prodrugs
  2. Chakrapani, H.; Kalathur, R. C.; Maciag, A. E.; Citro, M. L.; Ji, X. H.; Keefer, L. K.; Saavedra, J. E.
  3. Bioorganic & Medicinal Chemistry. 2008 16(22): 9764-9771.
  1. 15.   Cell-Permeable Esters of Diazeniumdiolate-Based Nitric Oxide Prodrugs
  2. Chakrapani, H.; Maciag, A. E.; Citro, M. L.; Keefer, L. K.; Saavedra, J. E.
  3. Organic Letters. 2008 10(22): 5155-5158.
  1. 16.   Optimization of the doxycycline-dependent simian immunodeficiency virus through in vitro evolution
  2. Das, A. T.; Klaver, B.; Centlivre, M.; Harwig, A.; Ooms, M.; Page, M.; Almond, N.; Yuan, F.; Piatak, M.; Lifson, J. D.; Berkhout, B.
  3. Retrovirology. 2008 5 AR 44
  1. 17.   Conformationally constrained analogues of diacylglycerol (DAG). 28. DAG-dioxolanones reveal a new additional interaction site in the C1b domain of PKC delta
  2. Choi, Y.; Pu, Y.; Peach, M. L.; Kang, J. H.; Lewin, N. E.; Sigano, D. M.; Garfield, S. H.; Blumberg, P. M.; Marquez, V. E.
  3. Journal of Medicinal Chemistry. 2007, Jul; 50(15): 3465-3481.
  1. 18.   The CD95 receptor: Apoptosis revisited
  2. Peter, M. E.; Budd, R. C.; Desbarats, J.; Hedrick, S. M.; Hueber, A. O.; Newell, M. K.; Owen, L. B.; Tschopp, J.; Wajant, H.; Wallach, D.; Wiltrout, R. H.; Zornig, M.; Lynch, D. H.
  3. Cell. 2007, May; 129(3): 447-450.
  1. 19.   Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm
  2. Shapiro, B. A.; Kasprzak, W.; Grunewald, C.; Aman, J.
  3. Journal of Molecular Graphics & Modelling. 2006, Dec; 25(4): 514-531.
  1. 20.   Active transcription of rRNA operons is a driving force for the distribution of RNA polymerase in bacteria: Effect of extrachromosomal copies of rrnB on the in vivo localization of RNA polymerase
  2. Cabrera, J. E.; Jin, D. J.
  3. Journal of Bacteriology. 2006, Jun; 188(11): 4007-4014.
  1. 21.   Protein kinase C zeta is required for epidermal growth factor-induced chemotaxis of human breast cancer cells
  2. Sun, R. H.; Gao, P.; Chen, L.; Ma, D. L.; Wang, J. M.; Oppenheim, J. J.; Zhang, N.
  3. Cancer Research. 2005, FEB 15; 65(4): 1433-1441.
  1. 22.   Predicting molecular interactions in silico: I. A guide to pharmacophore identification and its applications to drug design
  2. Dror, O.; Shulman-Peleg, A.; Nussinov, R.; Wolfson, H. J.
  3. Current Medicinal Chemistry. 2004 11(1): 71-90.
  1. 23.   Identification and functional clustering of global gene expression differences between human age-related cataract and clear lenses
  2. Hawse, J.; Hejtmancik, J.; Huang, Q. L.; Sheets, N.; Hosack, D.; Lempicki, R.; Horwitz, J.; Kantorow, M.
  3. Molecular Vision. 2003 9(63-66): 515-537.
  1. 24.   A non-canonical Lon proteinase lacking the ATPase domain employs the Ser-Lys catalytic dyad to exercise broad control over the life cycle of a double-stranded RNA virus
  2. Birghan, C.; Mundt, E.; Gorbalenya, A. E.
  3. Embo Journal. 2000 19(1): 114-123.
  1. 25.   Differentiation-induced internal translation of c-sis mRNA: Analysis of the cis elements and their differentiation-linked binding to the hnRNP C protein
  2. Sella, O.; Gerlitz, G.; Le, S. Y.; Elroy-Stein, O.
  3. Molecular and Cellular Biology. 1999 19(8): 5429-5440.
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