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  1. 1.   Longitudinal single-cell profiles of lung regeneration after viral infection reveal persistent injury-associated cell states
  2. Niethamer, Terren K; Planer, Joseph D; Morley, Michael P; Babu, Apoorva; Zhao, Gan; Basil, Maria C; Cantu, Edward; Frank, David B; Diamond, Joshua M; Nottingham, Ana N; Li, Shanru; Sharma,Arnav; Hallquist, Hannah; Levin, Lillian I; Zhou, Su; Vaughan, Andrew E; Morrisey, Edward E
  3. Cell Stem Cell. 2025, Jan 13;
  1. 2.   Potent and broad HIV-1 neutralization in fusion peptide-primed SHIV-infected macaques
  2. Wang, Hua; Cheng, Cheng; Dal Santo, James L; Shen, Chen-Hsiang; Bylund, Tatsiana; Henry, Amy R; Howe, Colin A; Hwang, Juyun; Morano, Nicholas C; Morris, Daniel J; Pletnev, Sergei; Roark, Ryan S; Zhou, Tongqing; Hansen, Bryan T; Hoyt, Forrest H; Johnston, Timothy S; Wang, Shuyi; Zhang, Baoshan; Ambrozak, David R; Becker, Jordan E; Bender, Michael F; Changela, Anita; Chaudhary, Ridhi; Corcoran, Martin; Corrigan, Angela R; Foulds, Kathryn E; Guo, Yicheng; Lee, Myungjin; Li, Yingying; Lin, Bob C; Liu, Tracy; Louder, Mark K; Mandolesi, Marco; Mason, Rosemarie D; McKee, Krisha; Nair, Vinod; O'Dell, Sijy; Olia, Adam S; Ou, Li; Pegu, Amarendra; Raju, Nagarajan; Rawi, Reda; Roberts-Torres, Jesmine; Sarfo, Edward K; Sastry, Mallika; Schaub, Andrew J; Schmidt, Stephen D; Schramm, Chaim A; Schwartz, Cindi L; Smith, Sarah C; Stephens,Tyler; Stuckey, Jonathan; Teng, I-Ting; Todd, John-Paul; Tsybovsky,Yaroslav; Van Wazer, David J; Wang, Shuishu; Doria-Rose, Nicole A; Fischer, Elizabeth R; Georgiev, Ivelin S; Karlsson Hedestam, Gunilla B; Sheng, Zizhang; Woodward, Ruth A; Douek, Daniel C; Koup, Richard A; Pierson, Theodore C; Shapiro, Lawrence; Shaw, George M; Mascola, John R; Kwong, Peter D
  3. Cell. 2024, Oct 23;
  1. 3.   Lineage and ecology define liver tumor evolution in response to treatment
  2. Revsine, Mahler; Wang, Limin; Forgues, Marshonna; Behrens, Shay; Craig, Amanda J; Liu, Meng; Tran,Bao; Kelly,Michael; Budhu, Anuradha; Monge, Cecilia; Xie, Changqing; Hernandez, Jonathan M; Greten, Tim F; Wang, Xin Wei; Ma, Lichun
  3. Cell Reports. Medicine. 2024, Feb 20; 5(2): 101394.
  1. 4.   Abundant binary promoter switches in lineage-determining transcription factors indicate a digital component of cell fate determination
  2. Li,Hongchuan; Rahman, Md Ahasanur; Ruesch, Michael; Eisele, Caprice D; Anderson,Erik; Wright,Paul; Cao, Jennie; Ratnayake, Shashikala; Chen, Qingrong; Yan, Chunhua; Meerzaman, Daoud; Abraham, Roshini S; Freud, Aharon G; Anderson,Steve
  3. Cell Reports. 2023, Nov 16; 42(11): 113454.
  1. 5.   Potent monoclonal antibodies neutralize Omicron sublineages and other SARS-CoV-2 variants
  2. Chen, Zhaochun; Zhang, Peng; Matsuoka, Yumiko; Tsybovsky,Yaroslav; West, Kamille; Santos, Celia; Boyd, Lisa F; Nguyen, Hanh; Pomerenke, Anna; Stephens,Tyler; Olia, Adam S; Zhang, Baoshan; De Giorgi, Valeria; Holbrook, Michael R; Gross, Robin; Postnikova, Elena; Garza, Nicole L; Johnson, Reed F; Margulies, David H; Kwong, Peter D; Alter, Harvey J; Buchholz, Ursula J; Lusso, Paolo; Farci, Patrizia
  3. Cell Reports. 2022, Sep 30; 41(5): 111528.
  1. 6.   Hepatic leukemia factor-expressing paraxial mesoderm cells contribute to the developing brain vasculature
  2. Koui, Yuta; Ideue, Takako; Boylan,Michael; Anderson,Matthew; Osato, Motomi; Suda, Toshio; Yokomizo, Tomomasa; Mukouyama, Yoh-Suke
  3. Biology Open. 2022, Sep 15; 11(9):
  1. 7.   Genetic variation within the human papillomavirus type 16 genome is associated with oropharyngeal cancer prognosis
  2. Lang Kuhs, K A; Faden, D L; Chen, L; Smith, D K; Pinheiro, M; Wood, C B; Davis, S; Yeager,Meredith; Boland, J F; Cullen, M; Steinberg, M; Bass, S; Wang, X; Liu, P; Mehrad, M; Tucker, T; Lewis, J S; Ferris, R L; Mirabello, L
  3. Annals of Oncology : official journal of the European Society for Medical Oncology. 2022, Mar 16; 33(6): 638-648.
  1. 8.   Differential Expression of the Transcription Factor GATA3 Specifies Lineage and Functions of Innate Lymphoid Cells
  2. Zhong, Chao; Zheng, Mingzhu; Cui, Kairong; Martins, Andrew J; Hu, Gangqing; Li, Dan; Tessarollo,Lino; Kozlov,Serguei; Keller,Jonathan; Tsang, John S; Zhao, Keji; Zhu, Jinfang
  3. Immunity. 2020, JAN 14; 52(1): 83-+.
  1. 9.   Sensitivity of Human Papillomavirus (HPV) Lineage and Sublineage Variant Pseudoviruses to Neutralization by Nonavalent Vaccine Antibodies
  2. Godi, Anna; Kemp,Troy; Pinto,Ligia; Beddows, Simon
  3. The Journal of infectious diseases. 2019, Dec 15; 220(12): 1940-1945.
  1. 10.   RB inactivation in keratin 18 positive thymic epithelial cells promotes non-cell autonomous T cell hyperproliferation in genetically engineered mice
  2. Song, Yurong; Sullivan, Teresa; Klarmann, Kimberly; Gilbert, Debra; O'Sullivan, Theresa; Lu, Lucy; Wang, Sophie; Haines, Diana; Van Dyke, Terry; Keller, Jonathan
  3. PLOS ONE. 2017, Feb 3; 12(2): e0171510.
  1. 11.   Genomic diversity and phylogenetic relationships of human papillomavirus 16 (HPV16) in Nepal
  2. Makowsky, R.; Lhaki, P.; Wiener, H. W.; Bhatta, M. P.; Cullen, Michael; Johnson, D. C.; Perry, R. T.; Lama, M.; Boland, Joseph; Yeager, M.; Ghimire, S.; Broker, T. R.; Shrestha, S.
  3. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2016, Dec; 46: 7-11.
  1. 12.   The sequential activity of Gata3 and Thpok is required for the differentiation of CD1d-restricted CD4(+) NKT cells
  2. Wang, L.; Carr, T.; Xiong, Y. M.; Wildt, K. F.; Zhu, J. F.; Feigenbaum, L.; Bendelac, A.; Bosselut, R.
  3. European Journal of Immunology. 2010, Sep; 40(9): 2385-2390.
  1. 13.   Genetic Structure in Contemporary South Tyrolean Isolated Populations Revealed by Analysis of Y-Chromosome, mtDNA, and Alu Polymorphisms
  2. Pichler, I.; Mueller, J. C.; Stefanov, S. A.; de Grandi, A.; Volpato, C. B.; Pinggera, G. K.; Mayr, A.; Ogriseg, M.; Ploner, F.; Meitinger, T.; Pramstaller, P. P.
  3. Human Biology. 2009, Oct-Dec; 81(5-6): 875-898.
  1. 14.   Identification and Characterization of CRF02_AG, CRF06_cpx, and CRF09_cpx Recombinant Subtypes in Mali, West Africa
  2. Imamichi, H.; Koita, O.; Dabitao, D.; Dao, S.; Ibrah, M.; Sogoba, D.; Dewar, R. L.; Berg, S. C.; Jiang, M. K.; Parta, M.; Washington, J. A.; Polis, M. A.; Lane, H. C.; Tounkara, A.
  3. Aids Research and Human Retroviruses. 2009 25(1): 45-55.
  1. 15.   Phenotype and functional characterization of long-term gp100-specific memory CD8(+) T cells in disease-free melanoma patients before and after boosting immunization
  2. Walker, E. B.; Haley, D.; Petrausch, U.; Floyd, K.; Miller, W.; Sanjuan, N.; Alvord, G.; Fox, B. A.; Urba, W. J.
  3. Clinical Cancer Research. 2008 14(16): 5270-5283.
  1. 16.   The Zinc Finger Transcription Factor Zbtb7b Represses CD8-Lineage Gene Expression in Peripheral CD4(+) T Cells
  2. Wang, L.; Wildt, K. F.; Castro, E.; Xiong, Y.; Feigenbaum, L.; Tessarollo, L.; Bosselut, R.
  3. Immunity. 2008 29(6): 876-887 DI 10.1016/j.imm.
  1. 17.   Distinct functions for the transcription factors GATA-3 and ThPOK during intrathymic differentiation of CD4(+) T cells
  2. Wang, L.; Wildt, K. F.; Zhu, J. F.; Zhang, X. Y.; Feigenbaum, L.; Tessarollo, L.; Paul, W. E.; Fowlkes, B. J.; Bosselut, R.
  3. Nature Immunology. 2008 9(10): 1122-1130.
  1. 18.   Deletion of CD4 and CD8 coreceptors permits generation of alpha beta T cells that recognize antigens independently of the MHC
  2. Van Laethem, F.; Sarafova, S. D.; Park, J. H.; Tai, X.; Pobezinsky, L.; Guinter, T. I.; Adoro, S.; Adams, A.; Sharrow, S. O.; Feigenbaum, L.; Singer, A.
  3. Immunity. 2007, Nov; 27(5): 735-750.
  1. 19.   'Coreceptor tuning': cytokine signals transcriptionally tailor CD8 coreceptor expression to the self-specificity of the TCR
  2. Park, J. H.; Adoro, S.; Lucas, P. J.; Sarafova, S. D.; Alag, A. S.; Doan, L. L.; Erman, B.; Liu, X. L.; Ellmeier, W.; Bosselut, R.; Feigenbaum, L.; Singer, A.
  3. Nature Immunology. 2007, Oct; 8(10): 1049-1059.
  1. 20.   Genetic structure in contemporary South Tyrolean isolated populations revealed by analysis of Y-chromosome, mtDNA, and Alu polymorphisms
  2. Pichler, I.; Mueller, J. C.; Stefanov, S. A.; de Grandi, A.; Volpato, C. B.; Pinggera, G. K.; Mayr, A.; Ogriseg, M.; Ploner, F.; Meitinger, T.; Pramstaller, P. P.
  3. Human Biology. 2006, Aug; 78(4): 441-464.
  1. 21.   The Late Miocene radiation of modern Felidae: A genetic assessment
  2. Johnson, W. E.; Eizirik, E.; Pecon-Slattery, J.; Murphy, W. J.; Antunes, A.; Teeling, E.; O'Brien, S. J.
  3. Science. 2006, JAN 6; 311(5757): 73-77.
  1. 22.   Coincident thresholds of mutant protein for paralytic disease and protein aggregation caused by restrictively expressed superoxide dismutase cDNA
  2. Wang, J.; Xu, G. L.; Slunt, H. H.; Gonzales, V.; Coonfield, M.; Fromholt, D.; Copeland, N. G.; Jenkins, N. A.; Borchelt, D. R.
  3. Neurobiology of Disease. 2005, DEC; 20(3): 943-952.
  1. 23.   Inhibitory effects of tumor necrosis factor on hematopoiesis seen in vitro are translated to increased numbers of both committed and multipotent progenitors in TNF-deficient mice
  2. Drutskaya, M. S.; Ortiz, M.; Liepinsh, D. J.; Kuprash, D. V.; Nedospasov, S. A.; Keller, J. R.
  3. Experimental Hematology. 2005, NOV; 33(11): 1348-1356.
  1. 24.   Inactivation of FGF8 in early mesoderm reveals an essential role in kidney development
  2. Perantoni, A. O.; Timofeeva, O.; Naillat, F.; Richman, C.; Pajni-Underwood, S.; Wilson, C.; Vainio, S.; Dove, L. F.; Lewandoski, M.
  3. Development. 2005, SEP; 132(17): 3859-3871.
  1. 25.   A role for mixed lineage kinases in regulating transcription factor CCAAT/enhancer-binding protein-beta-dependent gene expression in response to interferon-gamma
  2. Roy, S. K.; Shuman, J. D.; Platanias, L. C.; Shapiro, P. S.; Reddy, S. P. M.; Johnson, P. F.; Kalvakolanu, D. V.
  3. Journal of Biological Chemistry. 2005, JUL 1; 280(26): 24462-24471.
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