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  1. 1.   Genomic insights for personalised care in lung cancer and smoking cessation: motivating at-risk individuals toward evidence-based health practices
  2. Chen, Tony; Pham, Giang; Fox, Louis; Adler, Nina; Wang,Kevin; Zhang, Jingning; Byun, Jinyoung; Han, Younghun; Saunders, Gretchen R B; Liu, Dajiang; Bray, Michael J; Ramsey, Alex T; McKay, James; Bierut, Laura J; Amos, Christopher I; Hung, Rayjean J; Lin, Xihong; Zhang, Haoyu; Chen, Li-Shiun
  3. EBioMedicine. 2024, Nov 08; 110: 105441.
  1. 2.   Disruption of Ca2+/calmodulin:KSR1 interaction lowers ERK activation
  2. Thines, Louise; Jang,Hyunbum; Li, Zhigang; Sayedyahossein, Samar; Maloney, Ryan; Nussinov,Ruth; Sacks, David B
  3. Protein Science : a publication of the Protein Society. 2024, May; 33(5): e4982.
  1. 3.   SHP2 clinical phenotype, cancer, or RASopathies, can be predicted by mutant conformational propensities
  2. Liu,Yonglan; Zhang,Wengang; Jang,Hyunbum; Nussinov,Ruth
  3. Cellular and Molecular Life Sciences : CMLS. 2023, Dec 12; 81(1): 5.
  1. 4.   Selenium Ameliorates Acetaminophen-Induced Oxidative Stress via MAPK and Nrf2 Pathways in Mice
  2. Indumathi, Mylanayakanahosahalli Chandrashekar; Swetha, Kamatam; Kandahalli Venkataranga Nayaka,Abhilasha; Siddappa, Shiva; Kumar, Shivamadhaiah Manjula; Prasad, Govinda Keerthi; Chen, Chu-Huang; Marathe, Gopal Kedihithlu
  3. Biological Trace Element Research. 2023, Sep 13;
  1. 5.   Mapping the KRAS Proteoform Landscape in Colorectal Cancer Identifies Truncated KRAS4B that Decreases MAPK Signaling
  2. Adams, Lauren M; Dehart,Caroline; Drown, Bryon S; Anderson, Lissa C; Bocik,William; Boja, Emily S; Hiltke, Tara M; Hendrickson, Christopher L; Rodriguez, Henry; Caldwell, Michael; Vafabakhsh, Reza; Kelleher, Neil L
  3. The Journal of Biological Chemistry. 2022, Dec 02; 299(1): 102768.
  1. 6.   The structural basis of BCR-ABL recruitment of GRB2 in chronic myelogenous leukemia
  2. Liu,Yonglan; Jang,Hyunbum; Zhang,Mingzhen; Tsai,Chung-Jung; Maloney,Ryan; Nussinov,Ruth
  3. Biophysical Journal. 2022, May 31;
  1. 7.   The mechanism of activation of MEK1 by B-Raf and KSR1
  2. Maloney,Ryan; Zhang,Mingzhen; Liu,Yonglan; Jang,Hyunbum; Nussinov,Ruth
  3. Cellular and molecular life sciences : CMLS. 2022, May 04; 79(5): 281.
  1. 8.   Trans-ancestral fine-mapping of MHC reveals key amino acids associated with spontaneous clearance of hepatitis C in HLA-DQß1
  2. Valencia, Ana; Vergara, Candelaria; Thio, Chloe L; Vince, Nicolas; Douillard, Venceslas; Grifoni, Alba; Cox, Andrea L; Johnson, Eric O; Kral, Alex H; Goedert, James J; Mangia, Alessandra; Piazzolla, Valeria; Mehta, Shruti H; Kirk, Gregory D; Kim, Arthur Y; Lauer, Georg M; Chung, Raymond T; Price, Jennifer C; Khakoo, Salim I; Alric, Laurent; Cramp, Matthew E; Donfield, Sharyne M; Edlin, Brian R; Busch, Michael P; Alexander, Graeme; Rosen, Hugo R; Murphy, Edward L; Wojcik, Genevieve L; Carrington,Mary; Gourraud, Pierre-Antoine; Sette, Alessandro; Thomas, David L; Duggal, Priya
  3. American journal of human genetics. 2022, Jan 25; 109(2): 299-310.
  1. 9.   The mechanism of Raf activation through dimerization
  2. Zhang,Mingzhen; Maloney,Ryan; Jang,Hyunbum; Nussinov,Ruth
  3. Chemical Science. 2021, Dec 08; 12(47): 15609-15619.
  1. 10.   IL-10 Signaling Elicited by Nivolumab-Induced Activation of the MAP Kinase Pathway Does Not Fully Contribute to Nivolumab-Modulated Heterogeneous T Cell Responses
  2. Harper, Taylor A.; Bacot, Silvia M.; Fennell, Christie Jane; Matthews,Rebecca; Zhu, Christina; Yue, Peng; Benton, Alexander; Friedman, Devira; Akue, Adovi; KuKuruga, Mark A.; Lee, Shiowjen; Wang, Tao; Feldman, Gerald M.
  3. International Journal of Molecular Sciences. 2021, Nov; 22(21):
  1. 11.   A UVB-responsive common variant at chromosome band 7p21.1 confers tanning response and melanoma risk via regulation of the aryl hydrocarbon receptor, AHR
  2. Xu, Mai; Mehl, Lindsey; Zhang, Tongwu; Thakur, Rohit; Sowards, Hayley; Myers, Timothy; Jessop, Lea; Chesi, Alessandra; Johnson, Matthew E; Wells, Andrew D; Michael, Helen T; Bunda, Patricia; Jones, Kristine; Higson, Herbert; Hennessey, Rebecca C; Jermusyk, Ashley; Kovacs, Michael A; Landi, Maria Teresa; Iles, Mark M; Goldstein, Alisa M; Choi, Jiyeon; Chanock, Stephen J; Grant, Struan F A; Chari,Raj; Merlino, Glenn; Law, Matthew H; Brown, Kevin M
  3. American journal of human genetics. 2021, Sep 2; 108(9): 1611-1630.
  1. 12.   What Markov State Models Can and Cannot Do: Correlation versus Path-Based Observables in Protein-Folding Models
  2. Suarez Alvarez,Ernesto; Wiewiora, Rafal P.; Wehmeyer, Chris; Noe, Frank; Chodera, John D.; Zuckerman, Daniel M.
  3. Journal of chemical theory and computation. 2021, May 11; 17(5): 3119-3133.
  1. 13.   New Therapeutic Opportunities for the Treatment of Squamous Cell Carcinomas: A Focus on Novel Driver Kinases
  2. Bensen, Ryan; Brognard,John
  3. International Journal of Molecular Sciences. 2021, Mar; 22(6):
  1. 14.   Karyotype Evolution in 10 Pinniped Species: Variability of Heterochromatin versus High Conservatism of Euchromatin as Revealed by Comparative Molecular Cytogenetics
  2. Beklemisheva, Violetta R; Perelman, Polina L; Lemskaya, Natalya A; Proskuryakova, Anastasia A; Serdyukova, Natalya A; Burkanov, Vladimir N; Gorshunov, Maksim B; Ryder, Oliver; Thompson,Mary; Lento, Gina; O'Brien, Stephen J; Graphodatsky, Alexander S
  3. Genes. 2020, Dec 10; 11(12): pii: E1485.
  1. 15.   Naturally Acquired Mouse Kidney Parvovirus Infection Produces a Persistent Interstitial Nephritis in Immunocompetent Laboratory Mice
  2. Edmondson,Elijah; Hsieh,Wang-Ting; Kramer,Josh; Breed,Matthew; Roelke-Parker,Melody; Stephens-Devalle, Julie; Pate, Nathan M; Bassel,Laura; Hollingshead,Melinda; Karim,Baktiar; Butcher,Donna; Warner,Andrew; Nagashima,Kunio; Gulani,Jatinder
  3. Veterinary pathology. 2020, Oct 05; pii:300985820953500.
  1. 16.   Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
  2. Gillette, Michael A; Satpathy, Shankha; Cao, Song; Dhanasekaran, Saravana M; Vasaikar, Suhas V; Krug, Karsten; Petralia, Francesca; Li, Yize; Liang, Wen-Wei; Reva, Boris; Krek, Azra; Ji, Jiayi; Song, Xiaoyu; Liu, Wenke; Hong, Runyu; Yao, Lijun; Blumenberg, Lili; Savage, Sara R; Wendl, Michael C; Wen, Bo; Li, Kai; Tang, Lauren C; MacMullan, Melanie A; Avanessian, Shayan C; Kane, M Harry; Newton, Chelsea J; Cornwell, MacIntosh; Kothadia, Ramani B; Ma, Weiping; Yoo, Seungyeul; Mannan, Rahul; Vats, Pankaj; Kumar-Sinha, Chandan; Kawaler, Emily A; Omelchenko, Tatiana; Colaprico, Antonio; Geffen, Yifat; Maruvka, Yosef E; da Veiga Leprevost, Felipe; Wiznerowicz, Maciej; Gümüs, Zeynep H; Veluswamy, Rajwanth R; Hostetter, Galen; Heiman, David I; Wyczalkowski, Matthew A; Hiltke, Tara; Mesri, Mehdi; Kinsinger, Christopher R; Boja, Emily S; Omenn, Gilbert S; Chinnaiyan, Arul M; Rodriguez, Henry; Li, Qing Kay; Jewell, Scott D; Thiagarajan,Mathangi; Getz, Gad; Zhang, Bing; Fenyö, David; Ruggles, Kelly V; Cieslik, Marcin P; Robles, Ana I; Clauser, Karl R; Govindan, Ramaswamy; Wang, Pei; Nesvizhskii, Alexey I; Ding, Li; Mani, D R; Carr, Steven A
  3. Cell. 2020, Jul 09; 182(1): 200-225.e35.
  1. 17.   Predicting RNA SHAPE scores with deep learning
  2. Bliss, Noah; Bindewald,Eckart; Shapiro,Bruce
  3. RNA biology. 2020, JUN 1; 1-7.
  1. 18.   Advancing RAS/RASopathy therapies: An NCI-sponsored intramural and extramural collaboration for the study of RASopathies
  2. Gross, Andrea M; Frone, Megan; Gripp, Karen W; Gelb, Bruce D; Schoyer, Lisa; Schill, Lisa; Stronach, Beth; Biesecker, Leslie G; Esposito,Dom; Hernandez, Edjay Ralph; Legius, Eric; Loh, Mignon L; Martin, Staci; Morrison,Deborah; Rauen, Katherine A; Wolters, Pamela L; Zand, Dina; McCormick, Frank; Savage, Sharon A; Stewart, Douglas R; Widemann, Brigitte C; Yohe, Marielle E
  3. American journal of medical genetics. Part A. 2020, APR; 182(4): 866-876.
  1. 19.   The quaternary assembly of KRas4B with Raf-1 at the membrane
  2. Jang,Hyunbum; Zhang,Mingzhen; Nussinov,Ruth
  3. Computational and Structural Biotechnology Journal. 2020, Mar 25; 18: 737-748.
  1. 20.   Target identification among known drugs by deep learning from heterogeneous networks
  2. Zeng, Xiangxiang; Zhu, Siyi; Lu, Weiqiang; Liu, Zehui; Huang, Jin; Zhou, Yadi; Fang, Jiansong; Huang, Yin; Guo, Huimin; Li, Lang; Trapp, Bruce D.; Nussinov,Ruth; Eng, Charis; Loscalzo, Joseph; Cheng, Feixiong
  3. CHEMICAL SCIENCE. 2020, Feb 21; 11(7): 1775-1797.
  1. 21.   Biochemical and structural analyses reveal that the tumor suppressor neurofibromin (NF1) forms a high-affinity dimer
  2. Sherekar,Mukul; Han, Sae-Won; Ghirlando, Rodolfo; Messing,Simon; Drew,Matt; Rabara,Dana; Waybright,Tim; Juneja, Puneet; O'Neill, Hugh; Stanley, Christopher B; Bhowmik, Debsindhu; Ramanathan, Arvind; Subramaniam,Sriram; Nissley,Dwight; Gillette,Bill; McCormick, Frank; Esposito,Dom
  3. The Journal of biological chemistry. 2020, JAN 24; 295(4): 1105-1119.
  1. 22.   Using SHAPE-MaP to probe small molecule-RNA interactions
  2. Martin, Sarah; Blankenship, Carson; Rausch,Jason; Sztuba-Solinska, Joanna
  3. Methods (San Diego, Calif.). 2019, SEP 1; 167: 105-116.
  1. 23.   Epigenetic regulation by endogenous metabolite pharmacology
  2. Kulkarni, Rhushikesh A.; Montgomery,David; Meier,Jordan
  3. Current opinion in chemical biology. 2019, Aug; 51: 30-39.
  1. 24.   MAP kinase and autophagy pathways cooperate to maintain RAS mutant cancer cell survival
  2. Lee, Chih-Shia; Lee, Liam C.; Yuan, Tina L.; Chakka, Sirisha; Fellmann, Christof; Lowe, Scott W.; Caplen, Natasha J.; McCormick, Frank; Luo, Ji
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, Mar 5; 116(10): 4508-4517.
  1. 25.   An admixture mapping meta-analysis implicates genetic variation at 18q21 with asthma susceptibility in Latinos
  2. Gignoux, Chris R; Torgerson, Dara G; Pino-Yanes, Maria; Uricchio, Lawrence H; Galanter, Joshua; Roth, Lindsey A; Eng, Celeste; Hu, Donglei; Nguyen, Elizabeth A; Huntsman, Scott; Mathias, Rasika A; Kumar, Rajesh; Rodriguez-Santana, Jose; Thakur, Neeta; Oh, Sam S; McGarry, Meghan; Moreno-Estrada, Andres; Sandoval, Karla; Winkler, Cheryl; Seibold, Max A; Padhukasahasram, Badri; Conti, David V; Farber, Harold J; Avila, Pedro; Brigino-Buenaventura, Emerita; Lenoir, Michael; Meade, Kelley; Serebrisky, Denise; Borrell, Luisa N; Rodriguez-Cintron, William; Thyne, Shannon; Joubert, Bonnie R; Romieu, Isabelle; Levin, Albert M; Sienra-Monge, Juan-Jose; Del Rio-Navarro, Blanca Estela; Gan, Weiniu; Raby, Benjamin A; Weiss, Scott T; Bleecker, Eugene; Meyers, Deborah A; Martinez, Fernando J; Gauderman, W James; Gilliland, Frank; London, Stephanie J; Bustamante, Carlos D; Nicolae, Dan L; Ober, Carole; Sen, Saunak; Barnes, Kathleen; Williams, L Keoki; Hernandez, Ryan D; Burchard, Esteban G
  3. Journal of Allergy and Clinical Immunology. 2019, Mar; 143(3): 957-969.
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