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  1. 1.   Evaluation of Intestinal Permeability Using Serum Biomarkers in Learning Early About Peanut Allergy Trial
  2. Aktas, Ozge Nur; Mateja,Allyson; Li, Min Jenny; Chatman, Lindsay; Grieco, Megan C; Baloh, Carolyn H; Huffaker, Michelle; Wheatley, Lisa M; du Toit, George; Lack, Gideon; Brittain, Erica; Frischmeyer-Guerrerio, Pamela A
  3. Allergy. 2025, Jan 13;
  1. 2.   Gene Co-Expression Network Analysis Associated with Endometrial Cancer Tumorigenesis and Survival Outcomes
  2. Clark, Alexis J; Singh, Rajesh; Leonis, Regina L; Stahlberg, Eric A; Clark, Zachary S; Lillard, James W
  3. International Journal of Molecular Sciences. 2024, Nov 18; 25(22):
  1. 3.   Evaluation of the feasibility and efficacy of point-of-care antibody tests for biomarker guided management of COVID-19
  2. Reilly, Cavan; Mylonakis, Eleftherios; Dewar,Robin; Young, Barnaby; Nordwall, Jacqueline; Bhagani, Sanjay; Chia, Po-Ying; Davis, Ruby; Files, Clark; Ginde, Adit A; Hatlen, Timothy; Helleberg, Marie; Hayanga, Awori; Jensen, Tomas O; Jain, Mamta K; Kalomenidis, Ioannis; Kim, Kami; Lallemand,Perrine; Lindegaard, Birgitte; Menon, Anupama; Ognenovska, Katherine; Poulakou, Garyfallia; Thorup Røge, Birgit; Rogers, Angela J; Shaw-Saliba, Katy; Sandkovsky, Uriel; Trautner, Barbara W; Vasudeva, Shikha S; Vekstein, Andrew; Viens, Kimberley; Wyncoll, James; DuChateau, Brian; Zhang, Zhenxing; Wu, Shujiang; Babiker, Abdel G; Davey, Victoria; Gelijns, Annetine; Higgs, Elizabeth; Kan, Virginia; Lundgren, Jens; Matthews, Gail V; Lane, H Cliff
  3. The Journal of Infectious Diseases. 2024, Sep 12;
  1. 4.   Severe Acute Respiratory Syndrome Coronavirus 2 Plasma Antibody and Nucleocapsid Antigen Status Predict Outcomes in Outpatients With Coronavirus Disease 2019
  2. Jilg, Nikolaus; Giganti, Mark J; Chew, Kara W; Shaw-Saliba, Katy; Ritz, Justin; Moser, Carlee; Evering, Teresa H; Daar, Eric S; Eron, Joseph J; Currier, Judith S; Hughes, Michael D; Lane, H Cliff; Dewar,Robin; Smith, Davey M; Li, Jonathan Z
  3. Clinical Infectious diseases : an official publication of the Infectious Diseases Society of America. 2024, Jul 17;
  1. 5.   Comprehensive proteogenomic characterization of rare kidney tumors
  2. Li, Ginny Xiaohe; Chen, Lijun; Hsiao, Yi; Mannan, Rahul; Zhang, Yuping; Luo, Jie; Petralia, Francesca; Cho, Hanbyul; Hosseini, Noshad; Leprevost, Felipe da Veiga; Calinawan, Anna; Li, Yize; Anand, Shankara; Dagar, Aniket; Geffen, Yifat; Kumar-Sinha, Chandan; Chugh, Seema; Le, Anne; Ponce, Sean; Guo, Shenghao; Zhang, Cissy; Schnaubelt, Michael; Al Deen, Nataly Naser; Chen, Feng; Caravan, Wagma; Houston, Andrew; Hopkins, Alex; Newton, Chelsea J; Wang, Xiaoming; Polasky, Daniel A; Haynes, Sarah; Yu, Fengchao; Jing, Xiaojun; Chen, Siqi; Robles, Ana I; Mesri, Mehdi; Thiagarajan,Mathangi; An, Eunkyung; Getz, Gad A; Linehan, W Marston; Hostetter, Galen; Jewell, Scott D; Chan, Daniel W; Wang, Pei; Omenn, Gilbert S; Mehra, Rohit; Ricketts, Christopher J; Ding, Li; Chinnaiyan, Arul M; Cieslik, Marcin P; Dhanasekaran, Saravana M; Zhang, Hui; Nesvizhskii, Alexey I
  3. Cell Reports. Medicine. 2024, May 21; 5(5): 101547.
  1. 6.   Novel subtypes of severe COVID-19 respiratory failure based on biological heterogeneity: a secondary analysis of a randomized controlled trial
  2. Alipanah-Lechner, Narges; Hurst-Hopf, James; Delucchi, Kevin; Swigart, Lamorna; Willmore, Andrew; LaCombe, Benjamin; Dewar,Robin; Lane, H Clifford; Lallemand, Perrine; Liu, Kathleen D; Esserman, Laura; Matthay, Michael A; Calfee, Carolyn S
  3. Critical Care (London, England). 2024, Feb 21; 28(1): 56.
  1. 7.   Effect of Neutralizing Monoclonal Antibody Treatment on Early Trajectories of Virologic and Immunologic Biomarkers in Patients Hospitalized With COVID-19
  2. Jensen, Tomas O; Grandits, Greg A; Jain, Mamta K; Murray, Thomas A; Grund, Birgit; Shaw-Saliba, Kathryn; Matthay, Michael A; Abassi, Mahsa; Ardelt, Magdalena; Baker, Jason V; Chen, Peter; Dewar, Robin L; Goodman, Anna L; Hatlen, Timothy J; Highbarger, Helene C; Holodniy, Mark; Lallemand, Perrine; Laverdure,Sylvain; Leshnower, Bradley G; Looney, David; Moschopoulos, Charalampos D; Mugerwa, Henry; Murray, Daniel D; Mylonakis, Eleftherios; Nagy-Agren, Stephanie; Rehman, M Tauseef; Rupert, Adam; Stevens, Randy A; Turville, Stuart; Weintrob, Amy; Wick, Katherine; Lundgren, Jens; Ko, Emily R
  3. The Journal of Infectious Diseases. 2023, Nov 09;
  1. 8.   ATR inhibition augments the efficacy of lurbinectedin in small-cell lung cancer
  2. Schultz, Christopher W; Zhang, Yang; Elmeskini, Rajaa; Zimmermann, Astrid; Fu, Haiqing; Murai, Yasuhisa; Wangsa, Darawalee; Kumar, Suresh; Takahashi, Nobuyuki; Atkinson,Devon; Saha, Liton Kumar; Lee, Chien-Fei; Elenbaas, Brian; Desai, Parth; Sebastian, Robin; Sharma, Ajit Kumar; Abel, Melissa; Schroeder, Brett; Krishnamurthy, Manan; Kumar, Rajesh; Roper, Nitin; Aladjem, Mirit; Zenke, Frank T; Ohler,Zoe; Pommier, Yves; Thomas, Anish
  3. EMBO Molecular Medicine. 2023, Jul 25; e17313.
  1. 9.   Redox phospholipidomics discovers pro-ferroptotic death signals in A375 melanoma cells in vitro and in vivo
  2. Tyurina, Yulia Y; Kapralov, Alexandr A; Tyurin, Vladimir A; Shurin, Galina; Amoscato, Andrew A; Rajasundaram, Dhivyaa; Tian, Hua; Bunimovich, Yuri L; Nefedova, Yulia; Herrick,William; Parchment,Ralph; Doroshow, James H; Bayir, Hulya; Srivastava,Apurva; Kagan, Valerian E
  3. Redox Biology. 2023, Feb 28; 61: 102650.
  1. 10.   Instance segmentation of mitochondria in electron microscopy images with a generalist deep learning model trained on a diverse dataset
  2. Conrad, Ryan; Narayan,Kedar
  3. Cell Systems. 2023, Jan 18; 14(1): 58-71.e5.
  1. 11.   The Influence of Preanalytical Biospecimen Handling on the Measurement of B Vitamers, Amino Acids, and Other Metabolites in Blood
  2. Michels, Kara A; Weinstein, Stephanie J; Albert, Paul S; Black, Amanda; Brotzman, Michelle; Diaz-Mayoral,Norma; Gerlanc, Nicole; Huang, Wen-Yi; Sampson, Joshua N; Shreves, Alaina; Ueland, Per Magne; Wyatt, Kathleen; Wentzensen, Nicolas; Abnet, Christian C
  3. Biopreservation and Biobanking. 2023, Jan 09;
  1. 12.   3'-[18F]fluoro-3'-deoxythymidine ([18F]FLT) Positron Emission Tomography as an In Vivo Biomarker of inhibition of CDK 4/6-Rb pathway by Palbociclib in a patient derived bladder tumor
  2. Tatum, James L; Kalen,Joseph; Jacobs, Paula M; Riffle,Lisa; James,Amy; Thang,Lai; Sanders,Chelsea; Hollingshead,Melinda; Basuli, Falguni; Shi, Jianfeng; Doroshow, James H
  3. Journal of Translational Medicine. 2022, Aug 18; 20(1): 375.
  1. 13.   Fewer Dimensions, More Structures for Improved Discrete Models of Dynamics of Free versus Antigen-Bound Antibody
  2. Kabir, Kazi Lutful; Ma, Buyong; Nussinov,Ruth; Shehu, Amarda
  3. Biomolecules. 2022, Jul 21; 12(7): 1011.
  1. 14.   Mesothelioma Mouse Models with Mixed Genomic States of Chromosome and Microsatellite Instability
  2. Song,Yurong; Baxter,Shaneen; Dai,Lisheng; Sanders,Chelsea; Burkett,Sandra; Baugher,Ryan; Mellott,Stephanie; Young,Todd; Lawhorn,Heidi; Difilippantonio,Simone; Karim,Baktiar; Kadariya, Yuwaraj; Pinto,Ligia; Testa, Joseph R; Shoemaker, Robert H
  3. Cancers. 2022, Jun 24; 14(13):
  1. 15.   BETA: a comprehensive benchmark for computational drug-target prediction
  2. Zong, Nansu; Li,Ning; Wen, Andrew; Ngo, Victoria; Yu, Yue; Huang, Ming; Chowdhury, Shaika; Jiang, Chao; Fu, Sunyang; Weinshilboum, Richard; Jiang, Guoqian; Hunter, Lawrence; Liu, Hongfang
  3. Briefings in Bioinformatics. 2022, Jun 02;
  1. 16.   CpG Site-Specific Methylation-Modulated Divergent Expression of PRSS3 Transcript Variants Facilitates Nongenetic Intratumor Heterogeneity in Human Hepatocellular Carcinoma
  2. Lin, Shuye; Xu, Hanli; Pang, Mengdi; Zhou, Xiaomeng; Pan, Yuanming; Zhang, Lishu; Guan, Xin; Wang, Xiaoyue; Lin, Bonan; Tian, Rongmeng; Chen,Keqiang; Zhang, Xiaochen; Yang, Zijiang; Ji, Fengmin; Huang, Yingying; Wei, Wu; Gong,Wang; Ren, Jianke; Wang,Jiming; Guo, Mingzhou; Huang, Jiaqiang
  3. Frontiers in Oncology. 2022, Apr 11; 12: 831268.
  1. 17.   Urine Single-Cell RNA Sequencing in Focal Segmental Glomerulosclerosis Reveals Inflammatory Signatures
  2. Latt, Khun Zaw; Heymann, Jurgen; Jessee, Joseph H; Rosenberg, Avi Z; Berthier, Celine C; Arazi, Arnon; Eddy, Sean; Yoshida, Teruhiko; Zhao,Yongmei; Chen,Vicky; Nelson,George; Cam,Maggie; Kumar,Parimal; Mehta,Monika; Kelly,Michael; Kretzler, Matthias; Ray, Patricio E; Moxey-Mims, Marva; Gorman, Gregory H; Lechner, Brent L; Regunathan-Shenk, Renu; Raj, Dominic S; Susztak, Katalin; Winkler,Cheryl; Kopp, Jeffrey B
  3. Kidney International Reports. 2022, Feb; 7(2): 289-304.
  1. 18.   Methylated Septin9 (mSEPT9): A promising blood-based biomarker for the detection and screening of early-onset colorectal cancer
  2. Loomans-Kropp, Holli A; Song,Yurong; Gala, Manish; Parikh, Aparna R; Van Seventer, Emily E; Alvarez, Rocio; Hitchins, Megan P; Shoemaker, Robert H; Umar, Asad
  3. Cancer Research Communications. 2022, Feb; 2(2): 90-98.
  1. 19.   Elevated basal serum tryptase: disease distribution and variability in a regional health system
  2. Waters, Aubri M; Park, Hyun J; Weskamp, Andrew L; Mateja,Allyson; Kachur, Megan E; Lyons, Jonathan J; Rosen, Benjamin J; Boggs, Nathan A
  3. The Journal of Allergy and Clinical Immunology. 2022, Jan 12; 10(9): 2424.
  1. 20.   Aligning Tumor Mutational Burden (TMB) quantification across diagnostic platforms: Phase 2 of the Friends of Cancer Research TMB Harmonization Project
  2. Vega, Diana Merino; Yee, Laura M; McShane, Lisa M; Williams,Mickey; Chen,Li; Vilimas, Tomas; Fabrizio, David; Funari, Vincent; Newberg, Justin; Bruce, Lauryn Keeler; Chen, Shu-Jen; Baden, Jonathan; Barrett, J Carl; Beer, Philip; Butler, Matthew; Cheng, Jen-Hao; Conroy, Jeffrey; Cyanam, Dinesh; Eyring, Kenneth; Garcia, Elizabeth; Green, George; Gregersen, Vivi Raundahl; Hellmann, Matthew D; Keefer, Laurel A; Lasiter, Laura; Lazar, Alexander J; Li, Ming-Chung; Macconaill, Laura E; Meier, Kristen; Mellert, Hestia; Pabla, Sarabjot; Pallavajjalla, Aparna; Pestano, Gary; Salgado, Roberto; Samara, Raed; Sokol, Ethan S; Stafford, Phillip; Budczies, Jan; Stenzinger, Albrecht; Tom, Warren; Valkenburg, Kenneth C; Wang, XiaoZhe; Weigman, Victor; Xie, Mingchao; Xie, Qian; Zehir, Ahmet; Zhao, Chen; Zhao, Yingdong; Stewart, Mark D; Allen, Jeff
  3. Annals of oncology : official journal of the European Society for Medical Oncology. 2021, Dec; 32(12): 1626-1636.
  1. 21.   Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens
  2. Whiteaker, Jeffrey R; Lundeen, Rachel A; Zhao, Lei; Schoenherr, Regine M; Burian, Aura; Huang, Dongqing; Voytovich, Ulianna; Wang, Tao; Kennedy, Jacob J; Ivey, Richard G; Lin, Chenwei; Murillo, Oscar D; Lorentzen, Travis D; Thiagarajan,Mathangi; Colantonio,Simona; Caceres,Tessa; Roberts,Rhonda; Knotts,Joseph; Reading,Joshua; Kaczmarczyk,Jan; Richardson, Christopher W; Garcia-Buntley,Stephanie; Bocik,William; Hewitt, Stephen M; Murray, Karen E; Do, Nhan; Brophy, Mary; Wilz, Stephen W; Yu, Hongbo; Ajjarapu, Samuel; Boja, Emily; Hiltke, Tara; Rodriguez, Henry; Paulovich, Amanda G
  3. Frontiers in immunology. 2021, Nov 11; 12
  1. 22.   The Complement Pathway Is Activated in People With Human Immunodeficiency Virus and Is Associated With Non-AIDS Comorbidities
  2. Vujkovic-Cvijin, Ivan; Sortino,Ornella; Verheij, Eveline; Wit, Ferdinand W.; Kootstra, Neeltje A.; Sellers, Brian; van der Loeff, Maarten Schim; Belkaid, Yasmine; Reiss, Peter; Sereti, Irini
  3. Journal of Infectious Diseases. 2021, Oct 28; 224(8): 1405-1409.
  1. 23.   Combination therapy with pazopanib and tivantinib modulates VEGF and c-MET levels in refractory advanced solid tumors
  2. Kummar, Shivaani; Srivastava,Apurva; Navas, Tony; Cecchi, Fabiola; Lee, Young H.; Bottaro, Donald P.; Park, Sook Ryun; Do, Khanh T.; Jeong, Woondong; Johnson, Barry C.; Voth, Andrea R.; Rubinstein, Larry; Wright, John J.; Parchment,Ralph; Doroshow, James H.; Chen, Alice P.
  3. Investigational new drugs. 2021, Jun 28;
  1. 24.   Clinical and Immunologic Predictors of Mycobacterium avium Complex Immune Reconstitution Inflammatory Syndrome in a Contemporary Cohort of Patients With Human Immunodeficiency Virus
  2. Breglio, Kimberly F; Vinhaes, Caian L; Arriaga, María B; Nason, Martha; Roby, Gregg; Adelsberger, Joseph; Andrade, Bruno B; Sheikh, Virginia; Sereti, Irini
  3. The Journal of infectious diseases. 2021, Jun 15; 223(12): 2124-2135.
  1. 25.   Ancient Adversary - HERV-K (HML-2) in Cancer
  2. Dervan, Eoin; Bhattacharyya,Dana; McAuliffe, Jake D.; Khan, Faizan H.; Glynn, Sharon A.
  3. Frontiers in oncology. 2021, May 13; 11
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