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  1. 1.   Trans-ancestral fine-mapping of MHC reveals key amino acids associated with spontaneous clearance of hepatitis C in HLA-DQß1
  2. Valencia, Ana; Vergara, Candelaria; Thio, Chloe L; Vince, Nicolas; Douillard, Venceslas; Grifoni, Alba; Cox, Andrea L; Johnson, Eric O; Kral, Alex H; Goedert, James J; Mangia, Alessandra; Piazzolla, Valeria; Mehta, Shruti H; Kirk, Gregory D; Kim, Arthur Y; Lauer, Georg M; Chung, Raymond T; Price, Jennifer C; Khakoo, Salim I; Alric, Laurent; Cramp, Matthew E; Donfield, Sharyne M; Edlin, Brian R; Busch, Michael P; Alexander, Graeme; Rosen, Hugo R; Murphy, Edward L; Wojcik, Genevieve L; Carrington,Mary; Gourraud, Pierre-Antoine; Sette, Alessandro; Thomas, David L; Duggal, Priya
  3. American journal of human genetics. 2022, Jan 25; 109(2): 299-310.
  1. 2.   A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response
  2. Luo, Yang; Kanai, Masahiro; Choi, Wanson; Li, Xinyi; Sakaue, Saori; Yamamoto, Kenichi; Ogawa, Kotaro; Gutierrez-Arcelus, Maria; Gregersen, Peter K.; Stuart, Philip E.; Elder, James T.; Forer, Lukas; Schoenherr, Sebastian; Fuchsberger, Christian; Smith, Albert V.; Fellay, Jacques; Carrington,Mary; Haas, David W.; Guo, Xiuqing; Palmer, Nicholette D.; Chen, Yii-Der Ida; Rotter, Jerome I.; Taylor, Kent D.; Rich, Stephen S.; Correa, Adolfo; Wilson, James G.; Kathiresan, Sekar; Cho, Michael H.; Metspalu, Andres; Esko, Tonu; Okada, Yukinori; Han, Buhm; McLaren, Paul J.; Raychaudhuri, Soumya
  3. Nature Genetics. 2021, Oct; 53(10): 1504-1516.
  1. 3.   Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs
  2. Weingarten-Gabbay, Shira; Klaeger, Susan; Sarkizova, Siranush; Pearlman, Leah R.; Chen, Da-Yuan; Gallagher, Kathleen M. E.; Bauer, Matthew R.; Taylor, Hannah B.; Dunn, W. Augustine; Tarr, Christina; Sidney, John; Rachimi, Suzanna; Conway, Hasahn L.; Katsis, Katelin; Wang, Yuntong; Leistritz-Edwards, Del; Durkin, Melissa R.; Tomkins-Tinch, Christopher H.; Finkel, Yaara; Nachshon, Aharon; Gentili, Matteo; Rivera, Keith D.; Carulli, Isabel P.; Chea, Vipheaviny A.; Chandrashekar, Abishek; Bozkus, Cansu Cimen; Carrington,Mary; Bhardwaj, Nina; Barouch, Dan H.; Sette, Alessandro; Maus, Marcela; Rice, Charles M.; Clauser, Karl R.; Keskin, Derin B.; Pregibon, Daniel C.; Hacohen, Nir; Carr, Steven A.; Abelin, Jennifer G.; Saeed, Mohsan; Sabeti, Pardis C.
  3. CELL. 2021, Jul 22; 184(15): 3962-3980.e17.
  1. 4.   HLA Alleles B*53:01 and C*06:02 Are Associated With Higher Risk of P. falciparum Parasitemia in a Cohort in Uganda
  2. Digitale, Jean C.; Callaway, Perri C.; Martin,Pat; Nelson,George; Viard,Mathias; Rek, John; Arinaitwe, Emmanuel; Dorsey, Grant; Kamya, Moses; Carrington,Mary; Rodriguez-Barraquer, Isabel; Feeney, Margaret E.
  3. Frontiers In Immunology. 2021, Mar 19; 12
  1. 5.   Genome-wide Screens Identify Lineage- and Tumor-Specific Genes Modulating MHC-I- and MHC-II-Restricted Immunosurveillance of Human Lymphomas
  2. Dersh, Devin; Phelan, James D; Gumina, Megan E; Wang, Boya; Arbuckle, Jesse H; Holly, Jaroslav; Kishton, Rigel J; Markowitz,Tovah; Seedhom, Mina O; Fridlyand, Nathan; Wright, George W; Huang, Da Wei; Ceribelli, Michele; Thomas, Craig J; Lack,Justin; Restifo, Nicholas P; Kristie, Thomas M; Staudt, Louis M; Yewdell, Jonathan W
  3. Immunity. 2021, Jan 12; 54(1): 116-131.e10.
  1. 6.   Ascorbic Acid Promotes KIR Demethylation during Early NK Cell Differentiation
  2. Wu, Cheng-Ying; Zhang, Bin; Kim, Hansol; Anderson,Steve; Miller, Jeffrey S; Cichocki, Frank
  3. Journal of immunology (Baltimore, Md. : 1950). 2020, SEP 15; 205(6): 1513-1523.
  1. 7.   HLA heterozygote advantage against HIV-1 is driven by quantitative and qualitative differences in HLA allele-specific peptide presentation
  2. Arora, Jatin; Pierini, Federica; McLaren, Paul J; Carrington,Mary; Fellay, Jacques; Lenz, Tobias L
  3. Molecular biology and evolution. 2020, MAR; 37(3): 639-650.
  1. 8.   Natural Killer Cell Recruitment and Activation Are Regulated by CD47 Expression in the Tumor Microenvironment
  2. Nath, Pulak Ranjan; Pal-Nath, Dipasmita; Mandal, Ajeet; Cam,Maggie; Schwartz, Anthony L.; Roberts, David D.
  3. CANCER IMMUNOLOGY RESEARCH. 2019, SEP; 7: 1547-1561.
  1. 9.   HIV peptidome-wide association study reveals patient-specific epitope repertoires associated with HIV control
  2. Arora, Jatin; McLaren, Paul J; Chaturvedi, Nimisha; Carrington, Mary; Fellay, Jacques; Lenz, Tobias L
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, Jan 15; 116(3): 944-949.
  1. 10.   Molecular evolution of elements controlling HLA-C expression: Adaptation to a role as a killer-cell immunoglobulin-like receptor ligand regulating natural killer cell function
  2. Anderson, Steve
  3. HLA. 2018, NOV; 92(5): 271-278.
  1. 11.   Identification of trophoblast-specific elements in the HLA-C core promoter
  2. Johnson, Jenna K; Wright, Paul; Li, Hongchuan; Anderson, Steve
  3. HLA. 2018, Oct 01; 92(5): 288-297.
  1. 12.   HIV-1 Control by NK Cells via Reduced Interaction between KIR2DL2 and HLA-C*12:02/C*14:03
  2. Lin, Zhansong; Kuroki, Kimiko; Kuse, Nozomi; Sun, Xiaoming; Akahoshi, Tomohiro; Qi, Ying; Chikata, Takayuki; Naruto, Takuya; Koyanagi, Madoka; Murakoshi, Hayato; Gatanaga, Hiroyuki; Oka, Shinichi; Carrington, Mary; Maenaka, Katsumi; Takiguchi, Masafumi
  3. CELL REPORTS. 2016, Nov 22; 17(9): 2210-2220.
  1. 13.   Copy Number Variation of KIR Genes Influences HIV-1 Control
  2. Pelak, K.; Need, A. C.; Fellay, J.; Shianna, K. V.; Feng, S.; Urban, T. J.; Ge, D. L.; De Luca, A.; Martinez-Picado, J.; Wolinsky, S. M.; Martinson, J. J.; Jamieson, B. D.; Bream, J. H.; Martin, M. P.; Borrow, P.; Letvin, N. L.; McMichael, A. J.; Haynes, B. F.; Telenti, A.; Carrington, M.; Goldstein, D. B.; Alter, G.; Vaccine, N. C. H. A.
  3. Plos Biology. 2011, Nov; 9(11):
  1. 14.   Epigenetic regulation of CIITA expression in human T-cells
  2. van Eggermond, M.; Boom, D. R.; Klous, P.; Schooten, E.; Marquez, V. E.; Wierda, R. J.; Holling, T. M.; van den Eisen, P. J.
  3. Biochemical Pharmacology. 2011, Nov; 82(10): 1430-1437.
  1. 15.   The Shaping of Modern Human Immune Systems by Multiregional Admixture with Archaic Humans
  2. Abi-Rached, L.; Jobin, M. J.; Kulkarni, S.; McWhinnie, A.; Dalva, K.; Gragert, L.; Babrzadeh, F.; Gharizadeh, B.; Luo, M.; Plummer, F. A.; Kimani, J.; Carrington, M.; Middleton, D.; Rajalingam, R.; Beksac, M.; Marsh, S. G. E.; Maiers, M.; Guethlein, L. A.; Tavoularis, S.; Little, A. M.; Green, R. E.; Norman, P. J.; Parham, P.
  3. Science. 2011, Oct; 333(6052): 89-94.
  1. 16.   Engineered Single Human CD4 Domains as Potent HIV-1 Inhibitors and Components of Vaccine Immunogens
  2. Chen, W. Z.; Feng, Y.; Gong, R.; Zhu, Z. Y.; Wang, Y. P.; Zhao, Q.; Dimitrov, D. S.
  3. Journal of Virology. 2011, Sep; 85(18): 9395-9405.
  1. 17.   Analysis of Binding of KIR3DS1*014 to HLA Suggests Distinct Evolutionary History of KIR3DS1
  2. O'Connor, G. M.; Yamada, E.; Rampersaud, A.; Thomas, R.; Carrington, M.; McVicar, D. W.
  3. Journal of Immunology. 2011, Sep; 187(5): 2162-2171.
  1. 18.   Characterization and polymorphic analysis of 4.5 kb genomic full-length HLA-C in the Chinese Han population
  2. Xu, Y.; Deng, Z.; O'HUigin, C.; Wang, D.; Gao, S.; Zeng, J.; Yang, B.; Jin, S.; Zou, H.
  3. Tissue Antigens. 2011, Aug; 78(2): 102-114.
  1. 19.   HIV-1 adaptation to NK-cell-mediated immune pressure
  2. Alter, G.; Heckerman, D.; Schneidewind, A.; Fadda, L.; Kadie, C. M.; Carlson, J. M.; Oniangue-Ndza, C.; Martin, M.; Li, B.; Khakoo, S. I.; Carrington, M.; Allen, T. M.; Altfeld, M.
  3. Nature. 2011, Aug; 476(7358): 96-+.
  1. 20.   Spectrum of MHC Class II Variability in Darwin's Finches and Their Close Relatives
  2. Sato, A.; Tichy, H.; Grant, P. R.; Grant, B. R.; Sato, T.; O'HUigin, C.
  3. Molecular Biology and Evolution. 2011, Jun; 28(6): 1943-1956.
  1. 21.   HLA/KIR Restraint of HIV: Surviving the Fittest
  2. Bashirova, A. A.; Thomas, R.; Carrington, M.; Paul, W. E.; Littman, D. R.; Yokoyama, W. M.
  3. Annual Review of Immunology. 2011 29: 295-317.
  1. 22.   Next-generation sequencing for HLA typing of class I loci
  2. Erlich, R. L.; Jia, X. M.; Anderson, S.; Banks, E.; Gao, X. J.; Carrington, M.; Gupta, N.; DePristo, M. A.; Henn, M. R.; Lennon, N. J.; de Bakker, P. I. W.
  3. Bmc Genomics. 2011, Jan; 12: 13.
  1. 23.   The Major Genetic Determinants of HIV-1 Control Affect HLA Class I Peptide Presentation
  2. Pereyra, F. P.; Jia, X. M.; McLaren, P. J.; Telenti, A.; de Bakker, P. I. W.; Walker, B. D.; Ripke, S.; Brumme, C. J.; Pulit, S. L.; Carrington, M.; Kadie, C. M.; Carlson, J. M.; Heckerman, D.; Graham, R. R.; Plenge, R. M.; Deeks, S. G.; Gianniny, L.; Crawford, G.; Sullivan, J.; Gonzalez, E.; Davies, L.; Camargo, A.; Moore, J. M.; Beattie, N.; Gupta, S.; Crenshaw, A.; Burtt, N. P.; Guiducci, C.; Gupta, N.; Gao, X. J.; Qi, Y.; Yuki, Y.; Piechocka-Trocha, A.; Cutrell, E.; Rosenberg, R.; Moss, K. L.; Lemay, P.; O'Leary, J.; Schaefer, T.; Verma, P.; Toth, I.; Block, B.; Baker, B.; Rothchild, A.; Lian, J.; Proudfoot, J.; Alvino, D. M. L.; Vine, S.; Addo, M. M.; Allen, T. M.; Altfeld, M.; Henn, M. R.; Le Gall, S.; Streeck, H.; Haas, D. W.; Kuritzkes, D. R.; Robbins, G. K.; Shafer, R. W.; Gulick, R. M.; Shikuma, C. M.; Haubrich, R.; Riddler, S.; Sax, P. E.; Daar, E. S.; Ribaudo, H. J.; Agan, B.; Agarwal, S.; Ahern, R. L.; Allen, B. L.; Altidor, S.; Altschuler, E. L.; Ambardar, S.; Anastos, K.; Anderson, B.; Anderson, V.; Andrady, U.; Antoniskis, D.; Bangsberg, D.; Barbaro, D.; Barrie, W.; Bartczak, J.; Barton, S.; Basden, P.; Basgoz, N.; Bazner, S.; Bellos, N. C.; Benson, A. M.; Berger, J.; Bernard, N. F.; Bernard, A. M.; Birch, C.; Bodner, S. J.; Bolan, R. K.; Boudreaux, E. T.; Bradley, M.; Braun, J. F.; Brndjar, J. E.; Brown, S. J.; Brown, K.; Brown, S. T.; Burack, J.; Bush, L. M.; Cafaro, V.; Campbell, O.; Campbell, J.; Carlson, R. H.; Carmichael, J. K.; Casey, K. K.; Cavacuiti, C.; Celestin, G.; Chambers, S. T.; Chez, N.; Chirch, L. M.; Cimoch, P. J.; Cohen, D.; Cohn, L. E.; Conway, B.; Cooper, D. A.; Cornelson, B.; Cox, D. T.; Cristofano, M. V.; Cuchural, G.; Czartoski, J. L.; Dahman, J. M.; Daly, J. S.; Davis, B. T.; Davis, K.; Davod, S. M.; DeJesus, E.; Dietz, C. A.; Dunham, E.; Dunn, M. E.; Ellerin, T. B.; Eron, J. J.; Fangman, J. J. W.; Farel, C. E.; Ferlazzo, H.; Fidler, S.; Fleenor-Ford, A.; Frankel, R.; Freedberg, K. A.; French, N. K.; Fuchs, J. D.; Fuller, J. D.; Gaberman, J.; Gallant, J. E.; Gandhi, R. T.; Garcia, E.; Garmon, D.; Gathe, J. C.; Gaultier, C. R.; Gebre, W.; Gilman, F. D.; Gilson, I.; Goepfert, P. A.; Gottlieb, M. S.; Goulston, C.; Groger, R. K.; Gurley, T. D.; Haber, S.; Hardwicke, R.; Hardy, W. D.; Harrigan, P. R.; Hawkins, T. N.; Heath, S.; Hecht, F. M.; Henry, W. K.; Hladek, M.; Hoffman, R. P.; Horton, J. M.; Hsu, R. K.; Huhn, G. D.; Hunt, P.; Hupert, M. J.; Illeman, M. L.; Jaeger, H.; Jellinger, R. M.; John, M.; Johnson, J. A.; Johnson, K. L.; Johnson, H.; Johnson, K.; Joly, J.; Jordan, W. C.; Kauffman, C. A.; Khanlou, H.; Killian, R. K.; Kim, A. Y.; Kim, D. D.; Kinder, C. A.; Kirchner, J. T.; Kogelman, L.; Kojic, E. M.; Korthuis, T.; Kurisu, W.; Kwon, D. S.; LaMar, M.; Lampiris, H.; Lanzafame, M.; Lederman, M. M.; Lee, D. M.; Lee, J. M. L.; Lee, M. J.; Lee, E. T. Y.; Lemoine, J.; Levy, J. A.; Llibre, J. M.; Liguori, M. A.; Little, S. J.; Liu, A. Y.; Lopez, A. J.; Loutfy, M. R.; Loy, D.; Mohammed, D. Y.; Man, A.; Mansour, M. K.; Marconi, V. C.; Markowitz, M.; Marques, R.; Martin, J. N.; Martin, H. L.; Mayer, K. H.; McElrath, M. J.; McGhee, T. A.; McGovern, B. H.; McGowan, K.; McIntyre, D.; McLeod, G. X.; Menezes, P.; Mesa, G.; Metroka, C. E.; Meyer-Olson, D.; Miller, A. O.; Montgomery, K.; Mounzer, K. C.; Nagami, E. H.; Nagin, I.; Nahass, R. G.; Nelson, M. O.; Nielsen, C.; Norene, D. L.; O'Connor, D. H.; Ojikutu, B. O.; Okulicz, J.; Oladehin, O. O.; Oldfield, E. C.; Olender, S. A.; Ostrowski, M.; Owen, W. F.; Pae, E.; Parsonnet, J.; Pavlatos, A. M.; Perlmutter, A. M.; Pierce, M. N.; Pincus, J. M.; Pisani, L.; Price, L. J.; Proia, L.; Prokesch, R. C.; Pujet, H. C.; Ramgopal, M.; Rathod, A.; Rausch, M.; Ravishankar, J.; Rhame, F. S.; Richards, C. S.; Richman, D. D.; Rodes, B.; Rodriguez, M.; Rose, R. C.; Rosenberg, E. S.; Rosenthal, D.; Ross, P. E.; Rubin, D. S.; Rumbaugh, E.; Saenz, L.; Salvaggio, M. R.; Sanchez, W. C.; Sanjana, V. M.; Santiago, S.; Schmidt, W.; Schuitemaker, H.; Sestak, P. M.; Shalit, P.; Shay, W.; Shirvani, V. N.; Silebi, V. I.; Sizemore, J. M.; Skolnik, P. R.; Sokol-Anderson, M.; Sosman, J. M.; Stabile, P.; Stapleton, J. T.; Starrett, S.; Stein, F.; Stellbrink, H. J.; Sterman, F. L.; Stone, V. E.; Stone, D. R.; Tambussi, G.; Taplitz, R. A.; Tedaldi, E. M.; Theisen, W.; Torres, R.; Tosiello, L.; Tremblay, C.; Tribble, M. A.; Trinh, P. D.; Tsao, A.; Ueda, P.; Vaccaro, A.; Valadas, E.; Vanig, T. J.; Vecino, I.; Vega, V. M.; Veikley, W.; Wade, B. H.; Walworth, C.; Wanidworanun, C.; Ward, D. J.; Warner, D. A.; Weber, R. D.; Webster, D.; Weis, S.; Wheeler, D. A.; White, D. J.; Wilkins, E.; Winston, A.; Wlodaver, C. G.; van't Wout, A.; Wright, D. P.; Yang, O. O.; Yurdin, D. L.; Zabukovic, B. W.; Zachary, K. C.; Zeeman, B.; Zhao, M.; Int, H. I. V. C. S.
  3. Science. 2010, Dec; 330(6010): 1551-1557.
  1. 24.   Influence of HLA Class I and HLA-KIR Compound Genotypes on HIV-2 Infection and Markers of Disease Progression in a Manjako Community in West Africa
  2. Yindom, L. M.; Leligdowicz, A.; Martin, M. P.; Gao, X. J.; Qi, Y.; Zaman, S. M. A.; van der Loeff, M. S.; van Tienen, C.; Jaye, A.; Aveika, A.; Worwui, A.; Diatta, M.; Vincent, T.; Whittle, H. C.; Rowland-Jones, S. L.; Walton, R.; Carrington, M.
  3. Journal of Virology. 2010, Aug; 84(16): 8202-8208.
  1. 25.   HLA-B alleles associate consistently with HIV heterosexual transmission, viral load, and progression to AIDS, but not susceptibility to infection
  2. Gao, X. J.; O'Brien, T. R.; Welzel, T. M.; Marti, D.; Qi, Y.; Goedert, J. J.; Phair, J.; Pfeiffer, R.; Carrington, M.
  3. Aids. 2010, Jul; 24(12): 1835-1840.
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