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  1. 1.   Optimization of the PROTAC linker region of the proteasome substrate receptor hRpn13 rationalized structural modeling with molecular dynamics
  2. Lu,Xiuxiu; Sabbasani, Venkata R; Walters,Kylie; Swenson, Rolf E; Walters,Kylie
  3. The Journal of Biological Chemistry. 2025, Apr 18; 108520.
  1. 2.   Examining the bias-efficiency tradeoff from incorporation of nonconcurrent controls in platform trials: A simulation study example from the adaptive COVID-19 treatment trial
  2. Bonnett,Tyler; Potter, Gail E; Dodd, Lori E
  3. Clinical Trials (London, England). 2025, Feb 08; 17407745251313928.
  1. 3.   Immune profile diversity is achieved with synthetic TLR4 agonists combined with the RG1-VLP vaccine in mice
  2. Matthews, Rebecca L; Khan,Nazneen; Beckman,Bradley; Sharma, Simran; Dietz, Zackary; Picking, William D; Izmirlian, Grant; Sanders,Chelsea; Stocks,Stacy; Difilippantonio,Simone; Kirnbauer, Reinhard; Roden, Richard B; Pinto,Ligia; Shoemaker, Robert H; Ernst, Robert K; Marshall,Jason
  3. Vaccine. 2024, Dec 03; 126577.
  1. 4.   A Novel Approach to Potentially Improving Soft-Tissue Sarcoma Survival: Prophylactic Lung Radiotherapy Inhibits Growth of Lung Metastases and Prolongs Survival in a Murine Soft-Tissue Sarcoma Model
  2. Ruditsky, Alexander; Fisher, Kalin; Tighe, Kayla; B'Lanton,Jasmine; Ma, Xinrong; Jiang, Kai; Byrne, Kevin; Carter-Cooper, Brandon; Casildo, Andrea; Passaniti, Antonino; Carrier, France; Lapidus, Rena; Richard, Katharina; Kallen, Michael E; Ng, Vincent Y
  3. Cureus. 2024, Dec; 16(12): e76334.
  1. 5.   Tissue-Specific DNA Methylation Changes in CD8+ T Cells During Chronic Simian Immunodeficiency Virus Infection of Infant Rhesus Macaques
  2. Nag,Mukta; Fogle, Jonathan E; Pillay, Santhoshan; Del Prete,Greg; De Paris, Kristina
  3. Viruses. 2024, Nov 27; 16(12):
  1. 6.   Waterless structures in the Protein Data Bank
  2. Wlodawer,Alexander; Dauter, Zbigniew; Rubach, Pawel; Minor, Wladek; Loch, Joanna I; Brzezinski, Dariusz; Gilski, Miroslaw; Jaskolski, Mariusz
  3. IUCrJ. 2024, Nov 01;
  1. 7.   Toward a CRISPR-based mouse model of Vhl-deficient clear cell kidney cancer: Initial experience and lessons learned
  2. Stransky, Laura A; Gao, Wenhua; Schmidt,Laura; Bi, Kevin; Ricketts, Christopher J; Ramesh, Vijyendra; James,Amy; Difilippantonio,Simone; Ileva,Lilia; Kalen,Joseph; Karim,Baktiar; Jeon, Albert; Morgan,Tamara; Warner,Andrew; Turan, Sevilay; Unite,Joanne; Tran,Bao; Choudhari,Sulbha; Zhao,Yongmei; Linn, Douglas E; Yun, Changhong; Dhandapani, Sripriya; Parab, Vaishali; Pinheiro, Elaine M; Morris,Nicole; He, Lixia; Vigeant, Sean M; Pignon, Jean-Christophe; Sticco-Ivins, Maura; Signoretti, Sabina; Van Allen, Eliezer M; Linehan, W Marston; Kaelin, William G
  3. Proceedings of the National Academy of Sciences of the United States of America. 2024, Oct 08; 121(41): e2408549121.
  1. 8.   ERK signaling promotes resistance to TRK kinase inhibition in NTRK fusion-driven glioma mouse models
  2. Schmid, Sebastian; Russell, Zachary R; Shimura Yamashita,Alex; West, Madeline E; Parrish, Abigail G; Walker, Julia; Rudoy, Dmytro; Yan, James Z; Quist, David C; Gessesse, Betemariyam N; Alvinez, Neriah; Hill, Kimberly D; Anderson,Larry; Cimino, Patrick J; Kumasaka, Debra K; Parchment,Ralph; Holland, Eric C; Szulzewsky, Frank
  3. Cell Reports. 2024, Oct 03; 43(10): 114829.
  1. 9.   A patient-derived cell model for malignant transformation in IDH-mutant glioma
  2. Kim, Olga; Sergi, Zach; Yu, Guangyang; Yamamoto, Kazutoshi; Quezado, Martha; Abdullaev, Zied; Crooks, Danel R; Kishimoto, Shun; Li, Qi; Lu, Peng; Blackman, Burchelle; Andresson,Thorkell; Wu,Xiaolin; Tran,Bao; Wei, Jun S; Zhang, Wei; Zhang, Meili; Song, Hua; Khan, Javed; Krishna, Murali C; Brender, Jeffrey R; Wu, Jing
  3. Acta Neuropathologica Communications. 2024, Sep 10; 12(1): 148.
  1. 10.   Solvent organization in the ultrahigh-resolution crystal structure of crambin at room temperature
  2. Chen, Julian C H; Gilski, Miroslaw; Chang, Changsoo; Borek, Dominika; Rosenbaum, Gerd; Lavens, Alex; Otwinowski, Zbyszek; Kubicki, Maciej; Dauter, Zbigniew; Jaskolski, Mariusz; Joachimiak, Andrzej
  3. IUCrJ. 2024, Sep 01; 11(Pt 5): 649-663.
  1. 11.   Modeling and Analysis of HIV-1 Pol Polyprotein as a Case Study for Predicting Large Polyprotein Structures
  2. Hao,Ming; Imamichi,Tomozumi; Chang,Weizhong
  3. International Journal of Molecular Sciences. 2024, Feb 02; 25(3):
  1. 12.   HIV-1 Transcription Inhibition Using Small RNA-Binding Molecules
  2. Khatkar, Pooja; Mensah, Gifty; Ning, Shangbo; Cowen, Maria; Kim, Yuriy; Williams, Anastasia; Abulwerdi, Fardokht A; Zhao, Yunjie; Zeng, Chen; Le Grice, Stuart F J; Kashanchi, Fatah
  3. Pharmaceuticals (Basel, Switzerland). 2023, Dec 25; 17(1):
  1. 13.   Viral dissemination and immune activation modulate antiretroviral drug levels in lymph nodes of SIV-infected rhesus macaques
  2. Srinivasula,Sharat; Degrange, Paula; Perazzolo, Simone; Bonvillain, Andrew; Tobery, Amanda; Kaplan, Jacob; Jang, Hyukjin; Turnier, Refika; Davies, Michael; Cottrell, Mackenzie; Ho, Rodney J Y; Di Mascio, Michele
  3. Frontiers in Immunology. 2023, Sep 18; 14: 1213455.
  1. 14.   Cross-neutralizing protection of vaginal and oral mucosa from HPV challenge by vaccination in a mouse model
  2. Sanders,Chelsea; Matthews,Rebecca; Esfahani, Sayyed Hamid Zarkesh; Khan,Nazneen; Patel,Nimit; Kalen,Joseph; Kirnbauer, Reinhard; Roden, Richard B; Difilippantonio,Simone; Pinto,Ligia; Shoemaker, Robert H; Marshall,Jason
  3. Vaccine. 2023, Jun 01;
  1. 15.   Magnetic Resonance Imaging for Monitoring of Hepatic Disease Induced by Ebola Virus: a Nonhuman Primate Proof-of-Concept Study
  2. Lee, Ji Hyun; Calcagno, Claudia; Feuerstein, Irwin M; Solomon,Jeffrey; Mani, Venkatesh; Huzella, Louis; Castro, Marcelo A; Laux, Joseph; Reeder, Rebecca J; Kim, Dong-Yun; Worwa, Gabriella; Thomasson, David; Hagen, Katie R; Ragland, Danny R; Kuhn, Jens H; Johnson, Reed F
  3. Microbiology Spectrum. 2023, May 15; e0353822.
  1. 16.   Tumor eradication by hetIL-15 locoregional therapy correlates with an induced intratumoral CD103intCD11b+ dendritic cell population
  2. Stellas, Dimitris; Karaliota,Sevasti; Stravokefalou, Vasiliki; Angel, Matthew; Nagy,Bethany; Goldfarbmuren,Kate; Bergamaschi, Cristina; Felber,Barbara; Pavlakis,George
  3. Cell Reports. 2023, May 12; 42(5): 112501.
  1. 17.   Longitudinal analyses using 18F-Fluorodeoxyglucose positron emission tomography with computed tomography as a measure of COVID-19 severity in the aged, young, and humanized ACE2 SARS-CoV-2 hamster models
  2. Cong, Yu; Lee, Ji Hyun; Perry, Donna L; Cooper, Kurt; Wang, Hui; Dixit, Saurabh; Liu, David X; Feuerstein, Irwin M; Solomon,Jeffrey; Bartos, Christopher; Seidel, Jurgen; Hammoud, Dima A; Adams, Ricky; Anthony, Scott M; Liang, Janie; Schuko, Nicolette; Li, Rong; Liu, Yanan; Wang, Zhongde; Tarbet, E Bart; Hischak, Amanda M W; Hart, Randy; Isic, Nejra; Burdette, Tracey; Drawbaugh, David; Huzella, Louis M; Byrum, Russell; Ragland, Danny; St Claire, Marisa C; Wada, Jiro; Kurtz, Jonathan R; Hensley, Lisa E; Schmaljohn, Connie S; Holbrook, Michael R; Johnson, Reed F
  3. Antiviral Research. 2023, Apr 15; 105605.
  1. 18.   Creation and preclinical evaluation of a novel mussel-inspired, biomimetic, bioactive bone graft scaffold: direct comparison with Infuse bone graft using a rat model of spinal fusion
  2. Cottrill, Ethan; Pennington, Zach; Wolf,Matthew; Dirckx, Naomi; Ehresman, Jeff; Perdomo-Pantoja, Alexander; Rajkovic, Christian; Lin, Jessica; Maestas, David R; Mageau, Ashlie; Lambrechts, Dennis; Stewart, Veronica; Sciubba, Daniel M; Theodore, Nicholas; Elisseeff, Jennifer H; Witham, Timothy
  3. Journal of Neurosurgery. Spine. 2023, Mar 31; 39(1): 113-121.
  1. 19.   Recombineering in Non-Model Bacteria
  2. Corts, Anna; Thomason,Lynn; Costantino, Nina; Court,Don
  3. Current Protocols. 2022, Dec; 2(12): e605.
  1. 20.   Loss of Brca1 and Trp53 in adult mouse mammary ductal epithelium results in development of hormone receptor-positive or hormone receptor-negative tumors, depending on inactivation of Rb family proteins
  2. Szabova,Ludmila; Gordon, Melanie B; Lu, Lucy; Pate, Nathan; Bassel,Laura; Iacovelli, Anthony J; Karim,Baktiar; Homan, Philip J; Householder,Deborah; Guerin,Theresa; Burkett,Sandra; Day,Amanda; Custer Lawrence,Wendi; Ohler,Zoe
  3. Breast Cancer Research : BCR. 2022, Nov 04; 24(1): 75.
  1. 21.   Toward the determination of sensitive and reliable whole-lung computed tomography features for robust standard radiomics and delta-radiomics analysis in a nonhuman primate model of coronavirus disease 2019
  2. Castro, Marcelo A; Reza, Syed; Chu, Winston T; Bradley, Dara; Lee, Ji Hyun; Crozier,Ian; Sayre, Philip J; Lee, Byeong Y; Mani, Venkatesh; Friedrich, Thomas C; O'Connor, David H; Finch, Courtney L; Worwa, Gabriella; Feuerstein, Irwin M; Kuhn, Jens H; Solomon,Jeffrey
  3. Journal of Medical Imaging (Bellingham, Wash.). 2022, Nov; 9(6): 066003.
  1. 22.   Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation
  2. Stahlberg,Eric; Abdel-Rahman, Mohamed; Aguilar, Boris; Asadpoure, Alireza; Beckman, Robert A; Borkon,Lynn; Bryan, Jeffrey N; Cebulla, Colleen M; Chang, Young Hwan; Chatterjee, Ansu; Deng, Jun; Dolatshahi, Sepideh; Gevaert, Olivier; Greenspan, Emily J; Hao, Wenrui; Hernandez-Boussard, Tina; Jackson, Pamela R; Kuijjer, Marieke; Lee, Adrian; Macklin, Paul; Madhavan, Subha; McCoy, Matthew D; Mohammad Mirzaei, Navid; Razzaghi, Talayeh; Rocha, Heber L; Shahriyari, Leili; Shmulevich, Ilya; Stover, Daniel G; Sun, Yi; Syeda-Mahmood, Tanveer; Wang, Jinhua; Wang, Qi; Zervantonakis, Ioannis
  3. Frontiers in Digital Health. 2022, Oct 6; 4: 1007784.
  1. 23.   Potent monoclonal antibodies neutralize Omicron sublineages and other SARS-CoV-2 variants
  2. Chen, Zhaochun; Zhang, Peng; Matsuoka, Yumiko; Tsybovsky,Yaroslav; West, Kamille; Santos, Celia; Boyd, Lisa F; Nguyen, Hanh; Pomerenke, Anna; Stephens,Tyler; Olia, Adam S; Zhang, Baoshan; De Giorgi, Valeria; Holbrook, Michael R; Gross, Robin; Postnikova, Elena; Garza, Nicole L; Johnson, Reed F; Margulies, David H; Kwong, Peter D; Alter, Harvey J; Buchholz, Ursula J; Lusso, Paolo; Farci, Patrizia
  3. Cell Reports. 2022, Sep 30; 41(5): 111528.
  1. 24.   Thymidylate synthase accelerates Men1-mediated pancreatic tumor progression and reduces survival
  2. Vijayakurup, Vinod; Maeng, Kyungah; Lee, Hye Seung; Meyer, Benjamin S; Burkett,Sandra; Nawab, Akbar; Dougherty, Michael W; Jobin, Christian; Mahmud, Iqbal; Garrett, Timothy J; Feely, Michael; Lee, Kyoung Bun; Kaye, Frederic J; Guijarro, Maria V; Zajac-Kaye, Maria
  3. JCI Insight. 2022, Sep 01; 7(19):
  1. 25.   A Knock-in Mouse Model of Thymoma with the GTF2I L424H Mutation
  2. He, Yongfeng; Kim, In-Kyu; Bian, Jing; Polyzos, Alexander; Di Giammartino, Dafne Campigli; Zhang, Yuwen; Luo, Ji; Hernandez, Maria O; Kedei, Noemi; Cam, Maggie; Borczuk, Alain C; Lee, Trevor; Han, Yumin; Conner, Elizabeth A; Wong, Madeline M F; Tillo, Desiree C; Umemura, Shigeki; Chen, Vincent; Ruan, Lydia; White, Jessica B; Miranda, Ileana C; Awasthi,Roackie; Altorki, Nasser K; Divakar, Prajan; Elemento, Olivier; Apostolou, Effie; Giaccone, Giuseppe
  3. Journal of Thoracic Oncology : official publication of the International Association for the Study of Lung Cancer. 2022, Aug 29; 17(12): 1375-1386.
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