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  1. 1.   CD163+ Macrophages Induce Endothelial-to-Mesenchymal Transition in Atheroma
  2. Mori, Masayuki; Sakamoto, Atsushi; Kawakami, Rika; Guo, Liang; Slenders, Lotte; Mosquera, Jose Verdezoto; Ghosh, Saikat Kumar B; Wesseling, Marian; Shiraki, Tatsuya; Bellissard, Arielle; Shah, Palak; Weinkauf, Craig C; Konishi, Takao; Sato, Yu; Cornelissen, Anne; Kawai, Kenji; Jinnouchi, Hiroyuki; Xu, Weili; Vozenilek, Aimee E; Williams, Desiree; Tanaka, Takamasa; Sekimoto, Teruo; Kelly,Michael; Fernandez, Raquel; Grogan, Alyssa; Coslet, A J; Fedotova, Alisa; Kurse, Anjali; Mokry, Michal; Romero, Maria E; Kolodgie, Frank D; Pasterkamp, Gerard; Miller, Clint L; Virmani, Renu; Finn, Aloke V
  3. Circulation Research. 2024, Jul 5; 135(2): e4-e23.
  1. 2.   Investigating the NRAS 5' UTR as a target for small molecules
  2. Balaratnam,Sumirtha; Torrey, Zachary R; Calabrese,Dave; Banco, Michael T; Yazdani, Kamyar; Liang, Xiao; Fullenkamp,Chris; Seshadri,Sri; Holewinski,Ronald; Andresson,Thorkell; Ferré-D'Amaré, Adrian R; Incarnato, Danny; Schneekloth,Jay
  3. Cell Chemical Biology. 2023, Jun 15; 30(6): 643-657.e8.
  1. 3.   CENP-A overexpression promotes aneuploidy with karyotypic heterogeneity
  2. Shrestha, Roshan L.; Rossi, Austin; Wangsa, Darawalee; Hogan, Ann K.; Zaldana, Kimberly S.; Suva, Evelyn; Chung, Yang Jo; Sanders,Chelsea; Difilippantonio,Simone; Karpova, Tatiana S.; Karim,Baktiar; Foltz, Daniel R.; Fachinetti, Daniele; Aplan, Peter D.; Ried, Thomas; Basrai, Munira A.
  3. The Journal of Cell Biology. 2021, Feb 23; 220(4):
  1. 4.   Inhibition of Nonfunctional Ras
  2. Nussinov,Ruth; Jang, Hyunbum; Gursoy, Attila; Keskin, Ozlem; Gaponenko, Vadim
  3. Cell Chemical Biology. 2021, Feb 18; 28(2): 121-133.
  1. 5.   Creating and screening natural product libraries
  2. Wilson,Brice; Thornburg,Chris; Henrich,Curtis; Grkovic,Tanja; O'Keefe,Barry
  3. Natural product reports. 2020, JUL 1; 37: 893-918.
  1. 6.   Whole-cell imaging of plasma membrane receptors by 3D lattice light-sheet dSTORM
  2. Wäldchen, Felix; Schlegel, Jan; Götz, Ralph; Luciano,Michael; Schnermann,Martin; Doose, Sören; Sauer, Markus
  3. Nature communications. 2020, Feb 14; 11(1): pii:10.1038/s41467-020-14731-0.
  1. 7.   The mechanism of RNA duplex recognition and unwinding by DEAD-box helicase DDX3X
  2. Song, He; Ji,Xinhua
  3. NATURE COMMUNICATIONS. 2019, Jul 12; 10(1):
  1. 8.   Measuring RNA-Ligand Interactions with Microscale Thermophoresis
  2. Moon, Michelle H.; Hilimire, Thomas A.; Sanders, Allix M.; Schneekloth, Jay
  3. BIOCHEMISTRY. 2018, Aug 7; 57(31): 4638-4643.
  1. 9.   Killer cell immunoglobulin-like receptor 3DL1 variation modifies HLA-B*57 protection against HIV-1
  2. Martin, Pat; Naranbhai, Vivek; Shea, Patrick R.; Qi, Ying; Ramsuran, Veron; Vince, Nicolas; Gao, Xiaojiang; Thomas, Rasmi; Brumme, Zabrina L.; Carlson, Jonathan M.; Wolinsky, Steven M.; Goedert, James J.; Walker, Bruce D.; Segal, Florencia P.; Deeks, Steven G.; Haas, David W.; Migueles, Stephen A.; Connors, Mark; Michael, Nelson; Fellay, Jacques; Gostick, Emma; Llewellyn-Lacey, Sian; Price, David A.; Lafont, Bernard A.; Pymm, Phillip; Saunders, Philippa M.; Widjaja, Jacqueline; Wong, Shu Cheng; Vivian, Julian P.; Rossjohn, Jamie; Brooks, Andrew G.; Carrington, Mary
  3. Journal of Clinical Investigation. 2018, May 01; 128(5): 1903-1912.
  1. 10.   Unequivocal determination of caulamidines A and B: application and validation of new tools in the structure elucidation tool box
  2. Milanowski, Dennis J.; Oku, Naoya; Cartner, Laura; Bokesch, Heidi; Williamson, R. Thomas; Sauri, Josep; Liu, Yizhou; Blinov, Kirill A.; Ding, Yuanqing; Li, Xing-Cong; Ferreira, Daneel; Walker, Larry A.; Khan, Shabana; Davies-Coleman, Michael T.; Kelley, Jim; McMahon, James B.; Martin, Gary E.; Gustafson, Kirk
  3. Chemical Science. 2018, Jan 14; 9(2): 307-314.
  1. 11.   The Functional Cycle of Rnt1p: Five Consecutive Steps of Double-Stranded RNA Processing by a Eukaryotic RNase III
  2. Song, He; Fang, Xianyang; Jin, Lan; Shaw, Gary; Wang, Yun-Xing; Ji, Xinhua
  3. STRUCTURE. 2017, Feb 7; 25(2): 353-363.
  1. 12.   Allosteric control of antibody-prion recognition through oxidation of a disulfide bond between the CH and CL chains.
  2. Zhao, Jun; Nussinov, Ruth; Ma, Buyong
  3. Protein engineering, design & selection: PEDS. 2017, Jan; 30(1): 67-76.
  1. 13.   Macrophage-derived nitric oxide initiates T-cell diapedesis and tumor rejection
  2. Sektioglu, I. M.; Carretero, R.; Bender, N.; Bogdan, C.; Garbi, N.; Umansky, V.; Umansky, L.; Urban, K.; von Knebel-Doberitz, M.; Somasundaram, V.; Wink, D.; Beckhove, P.; Hammerling, G. J.
  3. Oncoimmunology. 2016 5(10): e1204506.
  1. 14.   Two ZnF-UBP Domains in Isopeptidase T (USP5)
  2. Avvakumov, G. V.; Walker, J. R.; Xue, S.; Allali-Hassani, A.; Asinas, A.; Nair, U. B.; Fang, X. Y.; Zuo, X. B.; Wane, Y. X.; Wilkinson, K. D.; Dhe-Paganon, S.
  3. Biochemistry. 2012, Feb; 51(6): 1188-1198.
  1. 15.   Evolution-Based Design of an Injectable Hydrogel
  2. Geisler, I. M.; Schneider, J. P.
  3. Advanced Functional Materials. 2012, Feb; 22(3): 529-537.
  1. 16.   Psoriasis Patients Are Enriched for Genetic Variants That Protect against HIV-1 Disease
  2. Chen, H. Y.; Hayashi, G.; Lai, O. Y.; Dilthey, A.; Kuebler, P. J.; Wong, T. V.; Martin, M. P.; Vina, M. A. F.; McVean, G.; Wabl, M.; Leslie, K. S.; Maurer, T.; Martin, J. N.; Deeks, S. G.; Carrington, M.; Bowcock, A. M.; Nixon, D. F.; Liao, W.
  3. Plos Genetics. 2012, Feb; 8(2):
  1. 17.   Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine
  2. Afonin, K. A.; Grabow, W. W.; Walker, F. M.; Bindewald, E.; Dobrovolskaia, M. A.; Shapiro, B. A.; Jaeger, L.
  3. Nature Protocols. 2011, Dec; 6(12): 2022-2034.
  1. 18.   Multistrand RNA Secondary Structure Prediction and Nanostructure Design Including Pseudoknots
  2. Bindewald, E.; Afonin, K.; Jaeger, L.; Shapiro, B. A.
  3. Acs Nano. 2011, Dec; 5(12): 9542-9551.
  1. 19.   Killer cell immunoglobulin-like receptor 3DL1-mediated recognition of human leukocyte antigen B
  2. Vivian, J. P.; Duncan, R. C.; Berry, R.; O'Connor, G. M.; Reid, H. H.; Beddoe, T.; Gras, S.; Saunders, P. M.; Olshina, M. A.; Widjaja, J. M. L.; Harpur, C. M.; Lin, J.; Maloveste, S. M.; Price, D. A.; Lafont, B. A. P.; McVicar, D. W.; Clements, C. S.; Brooks, A. G.; Rossjohn, J.
  3. Nature. 2011, Nov; 479(7373): 401-U155.
  1. 20.   Analysis of Binding of KIR3DS1*014 to HLA Suggests Distinct Evolutionary History of KIR3DS1
  2. O'Connor, G. M.; Yamada, E.; Rampersaud, A.; Thomas, R.; Carrington, M.; McVicar, D. W.
  3. Journal of Immunology. 2011, Sep; 187(5): 2162-2171.
  1. 21.   Ex vivo functional responses to HLA-G differ between blood and decidual NK cells
  2. Apps, R.; Sharkey, A.; Gardner, L.; Male, V.; Kennedy, P.; Masters, L.; Farrell, L.; Jones, D.; Thomas, R.; Moffett, A.
  3. Molecular Human Reproduction. 2011, Sep; 17(9): 577-586.
  1. 22.   Hyperthermia-triggered intracellular delivery of anticancer agent to HER2(+) cells by HER2-specific affibody (ZHER2-GS-Cys)-conjugated thermosensitive liposomes (HER2(+) affisomes)
  2. Smith, B.; Lyakhov, I.; Loomis, K.; Needle, D.; Baxa, U.; Yavlovich, A.; Capala, J.; Blumenthal, R.; Puri, A.
  3. Journal of Controlled Release. 2011, Jul; 153(2): 187-194.
  1. 23.   Mouse Ly49G2(+) NK cells dominate early responses during both immune reconstitution and activation independently of MHC
  2. Barao, I.; Alvarez, M.; Ames, E.; Orr, M. T.; Stefanski, H. E.; Blazar, B. R.; Lanier, L. L.; Anderson, S. K.; Redelman, D.; Murphy, W. J.
  3. Blood. 2011, Jun; 117(26): 7032-7041.
  1. 24.   Quantitative Analysis of Phospholipids Using Nanostructured Laser Desorption Ionization Targets
  2. Colantonio, S.; Simpson, J. T.; Fisher, R. J.; Yavlovich, A.; Belanger, J. M.; Puri, A.; Blumenthal, R.
  3. Lipids. 2011, May; 46(5): 469-477.
  1. 25.   Allostery and population shift in drug discovery
  2. Kar, G.; Keskin, O.; Gursoy, A.; Nussinov, R.
  3. Current Opinion in Pharmacology. 2010, Dec; 10(6): 715-722.
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