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  1. 1.   Normal Mode Analysis of KRas4B Reveals Partner Specific Dynamics
  2. Eren, Meryem; Tuncbag, Nurcan; Jang,Hyunbum; Nussinov,Ruth; Gursoy, Attila; Keskin, Ozlem
  3. The journal of physical chemistry. B. 2021, May 27; 125(20): 5210-5221.
  1. 2.   Allostery and population shift in drug discovery
  2. Kar, G.; Keskin, O.; Gursoy, A.; Nussinov, R.
  3. Current Opinion in Pharmacology. 2010, Dec; 10(6): 715-722.
  1. 3.   Comparing interfacial dynamics in protein-protein complexes: an elastic network approach
  2. Zen, A.; Micheletti, C.; Keskin, O.; Nussinov, R.
  3. Bmc Structural Biology. 2010, Aug; 10: 13.
  1. 4.   The role of dynamic conformational ensembles in biomolecular recognition
  2. Boehr, D. D.; Nussinov, R.; Wright, P. E.
  3. Nature Chemical Biology. 2009 5(11): 789-796.
  1. 5.   HingeProt: Automated prediction of hinges in protein structures
  2. Emekli, U.; Schneidman-Duhovny, D.; Wolfson, H. J.; Nussinov, R.; Haliloglu, T.
  3. Proteins-Structure Function and Bioinformatics. 2008 70(4): 1219-1227.
  1. 6.   Automatic prediction of protein interactions with large scale motion
  2. Schneidman-Duhovny, D.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2007, Dec; 69(4): 764-773.
  1. 7.   Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages
  2. del Sol, A.; Arauzo-Bravo, M. J.; Moya, D. A.; Nussinov, R.
  3. Genome Biology. 2007 8(5):
  1. 8.   How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues
  2. Haliloglu, T.; Keskin, O.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2005, MAR; 88(3): 1552-1559.
  1. 9.   Modulating functional loop movements: The role of highly conserved residues in the correlated loop motions
  2. Gunasekaran, K.; Nussinov, R.
  3. Chembiochem. 2004 5(2): 224-230.
  1. 10.   FlexProt: Alignment of flexible protein structures without a predefinition of hinge regions
  2. Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Journal of Computational Biology. 2004 11(1): 83-106.
  1. 11.   A comparison between elastic network interpolation and MD simulation of 16S ribosomal RNA
  2. Kim, M. K.; Li, W.; Shapiro, B. A.; Chirikjian, G. S.
  3. Journal of Biomolecular Structure & Dynamics. 2003 21(3): 395-405.
  1. 12.   Relating molecular flexibility to function: A case study of tubulin
  2. Keskin, O.; Durell, S. R.; Bahar, I.; Jernigan, R. L.; Covell, D. G.
  3. Biophysical Journal. 2002 83(2): 663-680.
  1. 13.   Molecular motions and conformational changes of HPPK
  2. Keskin, O.; Ji, X.; Blaszcyk, J.; Covell, D. G.
  3. Proteins-Structure Function and Genetics. 2002 49(2): 191-205.
  1. 14.   Molecular mechanisms of chaperonin GroEL-GroES function
  2. Keskin, O.; Bahar, I.; Flatow, D.; Covell, D. G.; Jernigan, R. L.
  3. Biochemistry. 2002 41(2): 491-501.
  1. 15.   Anisotropy of fluctuation dynamics of proteins with an elastic network model
  2. Atilgan, A. R.; Durell, S. R.; Jernigan, R. L.; Demirel, M. C.; Keskin, O.; Bahar, I.
  3. Biophysical Journal. 2001 80(1): 505-515.
  1. 16.   Protein flexibility and electrostatic interactions
  2. Kumar, S.; Wolfson, H. J.; Nussinov, R.
  3. IBM Journal of Research and Development. 2001 45(3-4): 499-512.
  1. 17.   Interdomain interactions in hinge-bending transitions
  2. Sinha, N.; Kumar, S.; Nussinov, R.
  3. Structure. 2001 9(12): 1165-1181.
  1. 18.   Relating the structure of HIV-1 reverse transcriptase to its processing step
  2. Jernigan, R. L.; Bahar, I.; Covell, D. G.; Atilgan, A. R.; Erman, B.; Flatow, D. T.
  3. Journal of Biomolecular Structure & Dynamics. 2000 Special Issue S1: 49-55.
  1. 19.   Flexible structural comparison allowing hinge-bending, swiveling motions
  2. Verbitsky, G.; Nussinov, R.; Wolfson, H.
  3. Proteins. 1999 34(2): 232-254.
  1. 20.   Molecular dynamics simulation of alpha-lactalbumin and calcium binding c-type lysozyme
  2. Iyer, L. K.; Qasba, P. K.
  3. Protein Engineering. 1999 12(2): 129-139.
  1. 21.   Dynamic flexibility of protein-inhibitor complexes: A study of the HIV-1 protease KNI-272 complex
  2. Luo, X. C.; Kato, R. H.; Collins, J. R.
  3. Journal of the American Chemical Society. 1998 120(48): 12410-12418.
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