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  1. 1.   Systematic characterization of multi-omics landscape between gut microbial metabolites and GPCRome in Alzheimer's disease
  2. Qiu, Yunguang; Hou, Yuan; Gohel, Dhruv; Zhou, Yadi; Xu, Jielin; Bykova, Marina; Yang, Yuxin; Leverenz, James B; Pieper, Andrew A; Nussinov,Ruth; Caldwell, Jessica Z K; Brown, J Mark; Cheng, Feixiong
  3. Cell Reports. 2024, Apr 21; 43(5): 114128.
  1. 2.   Oral Shedding of an Oncogenic Virus Alters the Oral Microbiome in HIV+ Patients
  2. Dai, Lu; Lu, Yong-Chen; Chen, Jungang; Plaisance-Bonstaff, Karlie; Mu, Shengyu; Forrest, J Craig; Whitby,Denise; Post, Steven R; Qin, Zhiqiang
  3. Frontiers in Microbiology. 2022, Apr 19; 13: 882520.
  1. 3.   Cigarette Smoking and Opium Use in Relation to the Oral Microbiota in Iran
  2. Wu, Zeni; Han, Yongli; Caporaso, J Gregory; Bokulich, Nicholas; Mohamadkhani, Ashraf; Moayyedkazemi, Alireza; Hua, Xing; Kamangar, Farin; Wan, Yunhu; Suman, Shalabh; Zhu,Bin; Hutchinson,Amy; Dagnall,Casey; Jones,Kristine; Hicks,Belynda; Shi, Jianxin; Malekzadeh, Reza; Abnet, Christian C; Pourshams, Akram; Vogtmann, Emily
  3. Microbiology spectrum. 2021, Oct 31; 9(2): e0013821.
  1. 4.   Fecal microbiota transplant overcomes resistance to anti-PD-1 therapy in melanoma patients
  2. Davar, Diwakar; Dzutsev, Amiran K.; McCulloch, John A.; Rodrigues,Richard; Chauvin, Joe-Marc; Morrison, Robert M.; Deblasio, Richelle N.; Menna, Carmine; Ding, Quanquan; Pagliano, Ornella; Zidi, Bochra; Zhang, Shuowen; Badger, Jonathan H.; Vetizou, Marie; Cole, Alicia M.; Fernandes, Miriam R.; Prescott, Stephanie; Costa, Raquel G. F.; Balaji, Ascharya K.; Morgun, Andrey; Vujkovic-Cvijin, Ivan; Wang, Hong; Borhani, Amir A.; Schwartz, Marc B.; Dubner, Howard M.; Ernst, Scarlett J.; Rose, Amy; Najjar, Yana G.; Belkaid, Yasmine; Kirkwood, John M.; Trinchieri,Giorgio; Zarour, Hassane M.
  3. Science. 2021, Feb 5; 371(6529): 595-602.
  1. 5.   A dose-reduction HPV vaccine immunobridging trial of two HPV vaccines among adolescent girls in Tanzania (the DoRIS trial) - Study protocol for a randomised controlled trial
  2. Baisley, Kathy J; Whitworth, Hilary S; Changalucha, John; Pinto,Ligia; Dillner, Joakim; Kapiga, Saidi; de Sanjosé, Silvia; Mayaud, Philippe; Hayes, Richard J; Lacey, Charles J; Watson-Jones, Deborah
  3. Contemporary clinical trials. 2021, Jan 06; 101
  1. 6.   FAM3D is essential for colon homeostasis and host defense against inflammation associated carcinogenesis
  2. Liang, Weiwei; Peng, Xinjian; Li, Qingqing; Wang, Pingzhang; Lv, Ping; Song, Quansheng; She, Shaoping; Huang, Shiyang; Chen,Keqiang; Gong, Wanghua; Yuan,Wuxing; Thovarai, Vishal; Yoshimura, Teizo; O'huigin, Colm; Trinchieri,Giorgio; Huang, Jiaqiang; Lin, Shuye; Yao, Xiaohong; Bian, Xiuwu; Kong, Wei; Xi, Jianzhong; Wang,Jiming; Wang, Ying
  3. Nature communications. 2020, NOV 20; 11(1): 5912.
  1. 7.   Conventional Co-Housing Modulates Murine Gut Microbiota and Hematopoietic Gene Expression
  2. Chen, Jichun; Zhang, Shuling; Feng, Xingmin; Wu, Zhijie; Dubois, Wendy; Thovarai,Vishal; Ahluwalia, Sonia; Gao, Shouguo; Chen, Jinguo; Peat, Tyler; Sen,Shurjo; Trinchieri, Giorgio; Young, Neal S; Mock, Beverly A
  3. International journal of molecular sciences. 2020, SEP; 21(17):
  1. 8.   Attenuation of immune-mediated bone marrow damage in conventionally housed mice
  2. Li, Jun; Dubois, Wendy; Thovarai,Vishal; Wu, Zhijie; Feng, Xingmin; Peat, Tyler; Zhang, Shuling; Sen,Shurjo; Trinchieri,Giorgio; Chen, Jichun; Mock, Beverly A; Young, Neal S
  3. Molecular carcinogenesis. 2020, Feb; 59(2): 237-245.
  1. 9.   Oral microbial community composition is associated with pancreatic cancer: A case-control study in Iran
  2. Vogtmann, Emily; Han, Yongli; Caporaso, J Gregory; Bokulich, Nicholas; Mohamadkhani, Ashraf; Moayyedkazemi, Alireza; Hua, Xing; Kamangar, Farin; Wan, Yunhu; Suman, Shalabh; Zhu,Bin; Hutchinson,Amy; Dagnall,Casey; Jones,Kristine; Hicks,Belynda; Shi, Jianxin; Malekzadeh, Reza; Abnet, Christian C; Pourshams, Akram
  3. Cancer medicine. 2019, Nov 21;
  1. 10.   Interleukin 22 disrupts pancreatic function in newborn mice expressing IL-23
  2. Chen, Lili; Strohmeier, Valentina; He, Zhengxiang; Deshpande, Madhura; Catalan-Dibene, Jovani; Durum,Scott; Moran, Thomas M; Kraus, Thomas; Xiong, Huabao; Faith, Jeremiah J; Sodhi, Chhinder P; Hackam, David J; Lira, Sergio A; Furtado, Glaucia C
  3. Nature communications. 2019, Oct 04; 10(1): 4517.
  1. 11.   Intestinal non-canonical NF kappa B signaling shapes the local and systemic immune response
  2. Ramakrishnan, Sadeesh K.; Zhang, Huabing; Ma, Xiaoya; Jung, Inkyung; Schwartz, Andrew J.; Triner, Daniel; Devenport, Samantha N.; Das, Nupur K.; Xue, Xiang; Zeng, Melody Y.; Hu,Yinling; Mortensen, Richard M.; Greenson, Joel K.; Cascalho, Marilia; Wobus, Christiane E.; Colacino, Justin A.; Nunez, Gabriel; Rui, Liangyou; Shah, Yatrik M.
  3. Nature communications. 2019, Feb 8; 10(1):
  1. 12.   Cell-Type-Specific Responses to Interleukin-1 Control Microbial Invasion and Tumor-Elicited Inflammation in Colorectal Cancer
  2. Dmitrieva-Posocco, Oxana; Dzutsev, Amiran; Posocco, David F; Hou, Vivianty; Yuan, Wuxing; Thovarai, Vishal; Mufazalov, Ilgiz A; Gunzer, Matthias; Shilovskiy, Igor P; Khaitov, Musa R; Trinchieri, Giorgio; Waisman, Ari; Grivennikov, Sergei I
  3. Immunity. 2019, Jan 15; 50(1): 166-180.e7.
  1. 13.   An Interleukin-23-Interleukin-22 Axis Regulates Intestinal Microbial Homeostasis to Protect from Diet-Induced Atherosclerosis
  2. Fatkhullina, Aliia R.; Peshkova, Iuliia O.; Dzutsev, Amiran; Aghayev, Turan; McCulloch, John A.; Thovarai,Vishal; Badger, Jonathan H.; Vats, Ravi; Sundd, Prithu; Tang, Hsin-Yao; Kossenkov, Andrew V.; Hazen, Stanley L.; Trinchieri, Giorgio; Grivennikov, Sergei I.; Koltsova, Ekaterina K.
  3. Immunity. 2018, NOV 20; 49(5): 943-+.
  1. 14.   MICROBIOME Gut microbiome-mediated bile acid metabolism regulates liver cancer via NKT cells
  2. Ma, Chi; Han, Miaojun; Heinrich, Bernd; Fu, Qiong; Zhang, Qianfei; Sandhu, Milan; Agdashian, David; Terabe, Masaki; Berzofsky, Jay A.; Fako, Valerie; Ritz, Thomas; Longerich, Thomas; Theriot, Casey M.; McCulloch, John A.; Roy, Soumen; Yuan, Wuxing; Thovarai, Vishal; Sen, Shurjo; Ruchirawat, Mathuros; Korangy, Firouzeh; Wang, Xin Wei; Trinchieri, Giorgio; Greten, Tim F.
  3. SCIENCE. 2018, MAY 25; 360(6391): 876-+.
  1. 15.   Structural host- microbiota interaction networks
  2. Guven-Maiorov, Emine; Tsai, Chung-Jung; Nussinov, Ruth
  3. PLOS COMPUTATIONAL BIOLOGY. 2017, OCT; 13(10):
  1. 16.   How can computation advance microbiome research?
  2. Nussinov, Ruth; Papin, Jason A.
  3. PLOS COMPUTATIONAL BIOLOGY. 2017, Sep; 13(9):
  1. 17.   Longitudinal profiling reveals a persistent intestinal dysbiosis triggered by conventional anti-tuberculosis therapy.
  2. Namasivayam, Sivaranjani; Maiga, Mamoudou; Yuan, Wuxing; Thovarai, Vishal; Costa, Diego L; Mittereder, Lara R; Wipperman, Matthew F; Glickman, Michael S; Dzutsev, Amiran; Trinchieri, Giorgio; Sher, Alan
  3. Microbiome. 2017, Jul 07; 5(1): 71.
  1. 18.   Changes in intestinal microbiota composition and metabolism coincide with increased intestinal permeability in young adults under prolonged physiologic stress
  2. Karl, J Philip; Margolis, Lee M; Madslien, Elisabeth H; Murphy, Nancy E; Castellani, John W; Gundersen, Yngvar; Hoke, Allison V; Levangie, Michael W; Kumar, Raina; Chakraborty, Nabarun; Gautam, Aarti; Hammamieh, Rasha; Martini, Svein; Montain, Scott J; Pasiakos, Stefan M
  3. American Journal of Physiology. Gastrointestinal and Liver Physiology. 2017, Jun; 312(6): G559-G571.
  1. 19.   Gut microbiota and probiotics in colon tumorigenesis
  2. Zhu, Y. M.; Luo, T. M.; Jobin, C.; Young, H. A.
  3. Cancer Letters. 2011, Oct; 309(2): 119-127.
  1. 20.   Probiotics: From Bench to Market
  2. Klein, M.; Sanders, M. E.; Duong, T.; Young, H. A.
  3. Probiotics: From Bench to Market. 2010; 1212 : E1-E14.
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