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  1. 1.   TRAIL induces cytokine production via the NFkB2 pathway promoting neutrophil chemotaxis and neutrophil-mediated immune-suppression in triple negative breast cancer cells
  2. Kundu, Manjari; Greer, Yoshimi E; Lobanov, Alexei; Ridnour, Lisa; Donahue, Renee N; Ng, Yeap; Ratnayake, Shashi; White, Karley; Voeller, Donna; Weltz, Sarah; Chen, Qingrong; Lockett,Stephen; Cam, Maggie; Meerzaman, Daoud; Wink, David A; Weigert, Roberto; Lipkowitz, Stanley
  3. Cancer Letters. 2025, Jun 28; 620: 217692.
  1. 2.   Deletion of a single CTCF motif at the boundary of a chromatin domain with three FGF genes disrupts gene expression and embryonic development
  2. Chakraborty, Shreeta; Wenzlitschke, Nina; Anderson,Matthew; Eraso, Ariel; Baudic, Manon; Thompson, Joyce J; Evans, Alicia A; Shatford-Adams, Lilly M; Chari,Raj; Awasthi,Roackie; Dale, Ryan K; Lewandoski,Mark; Petros, Timothy J; Rocha, Pedro P
  3. Developmental Cell. 2025, Feb 24;
  1. 3.   Novel mechanisms of MITF regulation identified in a mouse suppressor screen
  2. Vu, Hong Nhung; Valdimarsson, Matti Már; Sigurbjörnsdóttir, Sara; Bergsteinsdóttir, Kristín; Debbache, Julien; Bismuth, Keren; Swing, Deborah A; Hallsson, Jón H; Larue, Lionel; Arnheiter, Heinz; Copeland, Neal G; Jenkins, Nancy A; Heidarsson, Petur O; Steingrímsson, Eiríkur
  3. EMBO Reports. 2024, Aug 21;
  1. 4.   Genome-wide profiling of transcription factor activity in primary liver cancer using single-cell ATAC sequencing
  2. Craig, Amanda J; Silveira, Maruhen A Datsch; Ma, Lichun; Revsine, Mahler; Wang, Limin; Heinrich, Sophia; Rae, Zachary; Ruchinskas, Allison; Dadkhah,Kimia; Do, Whitney; Behrens, Shay; Mehrabadi, Farid R; Dominguez, Dana A; Forgues, Marshonna; Budhu, Anuradha; Chaisaingmongkol, Jittiporn; Hernandez, Jonathan M; Davis, Jeremy L; Tran,Bao; Marquardt, Jens U; Ruchirawat, Mathuros; Kelly, Michael; Greten, Tim F; Wang, Xin W
  3. Cell Reports. 2023, Nov 17; 42(11): 113446.
  1. 5.   The capsid lattice engages a bipartite NUP153 motif to mediate nuclear entry of HIV-1 cores
  2. Shen, Qi; Kumari, Sushila; Xu, Chaoyi; Jang, Sooin; Shi, Jiong; Burdick,Ryan; Levintov, Lev; Xiong, Qiancheng; Wu, Chunxiang; Devarkar, Swapnil C; Tian, Taoran; Tripler, Therese N; Hu, Yingxia; Yuan, Shuai; Temple, Joshua; Feng, Qingzhou; Lusk, C Patrick; Aiken, Christopher; Engelman, Alan N; Perilla, Juan R; Pathak,Vinay; Lin, Chenxiang; Xiong, Yong
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Mar 28; 120(13): e2202815120.
  1. 6.   Development and Implementation of Nuclear Chemistry Experiments at the Undergraduate Level
  2. Konkankit, Chilaluck C.; Marker,Sierra; Bigham, Nicholas P.; Dale, Darren S.; Zax, David B.; Lorey, Daniel R.; Wilson, Justin J.
  3. Journal of Chemical Education. 2021, Dec 14; 98(12): 3831-3840.
  1. 7.   nightshift: A Python program for plotting simulated NMR spectra from assigned chemical shifts from the Biological Magnetic Resonance Data Bank
  2. Fucci,Ian; Byrd,Robert
  3. Protein Science. 2021, Sep 13;
  1. 8.   Novel pyrazolo[4,3-d]pyrimidine microtubule targeting agents (MTAs): Synthesis, structure-activity relationship, in vitro and in vivo evaluation as antitumor agents
  2. Islam, Farhana; Quadery, Tasdique M.; Bai,Ruoli; Luckett-Chastain, Lerin R.; Hamel,Ernest; Ihnat, Michael A.; Gangjee, Aleem
  3. Bioorganic & Medicinal Chemistry Letters. 2021, Jun 1; 41
  1. 9.   HIV-1 cores retain their integrity until minutes before uncoating in the nucleus
  2. Li,Chenglei; Burdick,Ryan; Nagashima,Kunio; Hu,Wei-Shau; Pathak,Vinay
  3. Proceedings of the National Academy of Sciences of the United States of America. 2021, Mar 09; 118(10):
  1. 10.   Combined multi-band decoupling in biomolecular NMR spectroscopy
  2. Anklin, Clemens; Byrd, R. Andrew
  3. Journal of Biomolecular NMR . 2021, Mar; 75(2-3): 89-95.
  1. 11.   Exploring the Potential Use of a PBMC-Based Functional Assay to Identify Predictive Biomarkers for Anti-PD-1 Immunotherapy
  2. Bacot, Silvia M.; Harper, Taylor A.; Matthews,Rebecca; Fennell, Christie Jane; Akue, Adovi; KuKuruga, Mark A.; Lee, Shiowjen; Wang, Tao; Feldman, Gerald M.
  3. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2020, DEC; 21(23):
  1. 12.   Impact of Nuclear Export Pathway on Cytoplasmic HIV-1 RNA Transport Mechanism and Distribution
  2. Chen,Jianbo; Umunnakwe, Chijioke; Sun, David Q; Nikolaitchik,Olga; Pathak,Vinay; Berkhout, Ben; Das, Atze T; Hu,Wei-Shau
  3. mBio. 2020, Nov; 11(6): pii: e01578-20.
  1. 13.   Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane
  2. Van,Que; López, Cesar A; Tonelli, Marco; Taylor,Troy; Niu, Ben; Stanley, Christopher B; Bhowmik, Debsindhu; Tran,Tim; Frank,Peter; Messing,Simon; Alexander,Patrick; Scott, Daniel; Ye, Xiaoying; Drew,Matt; Chertov,Oleg; Lösche, Mathias; Ramanathan, Arvind; Gross, Michael L; Hengartner, Nicolas W; Westler, William M; Markley, John L; Simanshu,Dhirendra; Nissley,Dwight; Gillette, William K; Esposito,Dom; McCormick, Frank; Gnanakaran, S; Heinrich, Frank; Stephen, Andrew G
  3. Proceedings of the National Academy of Sciences of the United States of America. 2020, SEP 29; 117(39): 24258-24268.
  1. 14.   Nuclear Import of the HIV-1 Core Precedes Reverse Transcription and Uncoating
  2. Selyutina, Anastasia; Persaud, Mirjana; Lee,Kyeongeun; KewalRamani,Vineet; Diaz-Griffero, Felipe
  3. Cell reports. 2020, Sep 29; 32(13): 108201.
  1. 15.   A terminal alpha 3-galactose modification regulates an E3 ubiquitin ligase subunit in Toxoplasma gondii
  2. Mandalasi, Msano; Kim, Hyun W.; Thieker, David; Sheikh, M. Osman; Gas-Pascual, Elisabet; Rahman,Kazi; Zhao, Peng; Daniel, Nitin G.; van der Wel, Hanke; Ichikawa, H. Travis; Glushka, John N.; Wells, Lance; Woods, Robert J.; Wood, Zachary A.; West, Christopher M.
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2020, JUL 3; 295(27): 9223-9243.
  1. 16.   Multi-omics: Differential expression of IFN-? results in distinctive mechanistic features linking chronic inflammation, gut dysbiosis, and autoimmune diseases
  2. Bae,Heekyong; Leung, Patrick S C; Hodge, Deborah L; Fenimore,John; Jeon, Seon-Min; Thovarai,Vishal; Dzutsev,Amiran; Welcher, Andrew A; Boedigheimer, Michael; Damore, Michael A; Choi, Myung-Sook; Fravell, Richard A; Trinchieri,Giorgio; Gershwin, M Eric; Young,Howard
  3. Journal of autoimmunity. 2020, JUL; 111: 102436.
  1. 17.   Deleterious effects of carbon-carbon dipolar coupling on RNA NMR dynamics
  2. Nam, Hyeyeon; Becette, Owen; LeBlanc, Regan M; Oh, Daniel; Case, David A; Dayie, Theodore K
  3. Journal of biomolecular NMR. 2020, May 03;
  1. 18.   Target identification among known drugs by deep learning from heterogeneous networks
  2. Zeng, Xiangxiang; Zhu, Siyi; Lu, Weiqiang; Liu, Zehui; Huang, Jin; Zhou, Yadi; Fang, Jiansong; Huang, Yin; Guo, Huimin; Li, Lang; Trapp, Bruce D.; Nussinov,Ruth; Eng, Charis; Loscalzo, Joseph; Cheng, Feixiong
  3. CHEMICAL SCIENCE. 2020, Feb 21; 11(7): 1775-1797.
  1. 19.   Allostery in Its Many Disguises: From Theory to Applications
  2. Wodak, Shoshana J.; Paci, Emanuele; Dokholyan, Nikolay; Berezovsky, Igor N.; Horovitz, Amnon; Li, Jing; Hilser, Vincent J.; Behar, Ivet; Karanicolas, John; Stock, Gerhard; Hamm, Peter; Stote, Roland H.; Eberhardt, Jerome; Chebaro, Yassmine; Dejaegere, Annick; Cecchini, Marco; Changeux, Jean-Pierre; Bolhuis, Peter G.; Vreede, Jocelyne; Faccioli, Pietro; Orioli, Simone; Ravasio, Riccardo; Yen, Le; Brito, Carolina; Wyart, Matthieu; Gkeka, Paraskevi; Rivalta, Ivan; Palermo, Giulia; Mccammon, J. Andrew; Panecka-Hofman, Joanna; Wade, Rebecca C.; Di Pizio, Antonella; Niv, Masha Y.; Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum; Padhorny, Dzmitry; Kozakov, Dima; Mcleish, Tom
  3. Structure (London, England : 1993). 2019, Apr 2; 27(4): 566-578.
  1. 20.   Multiple Roles of HIV-1 Capsid during the Virus Replication Cycle
  2. Novikova, Mariia; Zhang, Yulan; Freed,Eric; Peng, Ke
  3. Virologica Sinica. 2019, APR; 34(2): 119-134.
  1. 21.   Localized RAS signaling drives cancer
  2. Basu, Sandip K; Basu,Srikanta; Johnson,Peter
  3. Oncoscience. 2019, Mar; 6(3-4): 298-300.
  1. 22.   Structural basis and mechanism of the unfolding-induced activation of HdeA, a bacterial acid response chaperone
  2. Yu, Xing-Chi; Hu, Yunfei; Ding, Jienv; Li, Hongwei; Jin, Changwen
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2019, Mar 1; 294(9): 3192-3206.
  1. 23.   Pillars Article: Purification of a human monocyte-derived neutrophil chemotactic factor that has peptide sequence similarity to other host defense cytokines. Proc. Natl. Acad. Sci. USA 1987. 84: 9233-9237.
  2. Yoshimura, Teizo; Matsushima, Kouji; Tanaka, Shuji; Robinson, Elizabeth A.; Appella, Ettore; Oppenheim, Joost; Leonard, Edward J.
  3. JOURNAL OF IMMUNOLOGY. 2019, Jan 1; 202(1): 5-9.
  1. 24.   Peptide-MHC (pMHC) binding to a human antiviral T cell receptor induces long-range allosteric communication between pMHC- and CD3-binding sites
  2. Rangarajan, Sneha; He, Yanan; Chen, Yihong; Kerzic, Melissa C.; Ma,Buyong; Gowthaman, Ragul; Pierce, Brian G.; Nussinov,Ruth; Mariuzza, Roy A.; Orban, John
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, Oct 12; 293(41): 15991-16005.
  1. 25.   Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration
  2. Achuthan, Vasudevan; Perreira, Jill M; Sowd, Gregory A; Puray-Chavez, Maritza; McDougall, William M; Paulucci-Holthauzen, Adriana; Wu, Xiaolin; Fadel, Hind J; Poeschla, Eric M; Multani, Asha S; Hughes, Stephen; Sarafianos, Stefan G; Brass, Abraham L; Engelman, Alan N
  3. Cell host & microbe. 2018, Sep 12; 24(3): 392-404.e8.
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