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  1. 1.   Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome
  2. Masood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G; Zheng, Lily; Zhao,Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A; Xiao, Wenming; Meerzaman, Daoud M
  3. Genome Biology. 2024, Jun 20; 25(1): 163.
  1. 2.   Distinct frequency patterns of LILRB3 and LILRA6 allelic variants in Europeans
  2. Bashirova,Arman; Kasprzak,Wojciech; Ohuigin,Colm; Carrington,Mary
  3. Immunogenetics. 2022, Nov 30;
  1. 3.   Proteogenomic and metabolomic characterization of human glioblastoma
  2. Wang, Liang-Bo; Karpova, Alla; Gritsenko, Marina A.; Kyle, Jennifer E.; Cao, Song; Li, Yize; Rykunov, Dmitry; Colaprico, Antonio; Rothstein, Joseph H.; Hong, Runyu; Stathias, Vasileios; Cornwell, MacIntosh; Petralia, Francesca; Wu, Yige; Reva, Boris; Krug, Karsten; Pugliese, Pietro; Kawaler, Emily; Olsen, Lindsey K.; Liang, Wen-Wei; Song, Xiaoyu; Dou, Yongchao; Wendl, Michael C.; Caravan, Wagma; Liu, Wenke; Zhou, Daniel Cui; Ji, Jiayi; Tsai, Chia-Feng; Petyuk, Vladislav A.; Moon, Jamie; Ma, Weiping; Chu, Rosalie K.; Weitz, Karl K.; Moore, Ronald J.; Monroe, Matthew E.; Zhao, Rui; Yang, Xiaolu; Yoo, Seungyeul; Krek, Azra; Demopoulos, Alexis; Zhu, Houxiang; Wyczalkowski, Matthew A.; McMichael, Joshua F.; Henderson, Brittany L.; Lindgren, Caleb M.; Boekweg, Hannah; Lu, Shuangjia; Baral, Jessika; Yao, Lijun; Stratton, Kelly G.; Bramer, Lisa M.; Zink, Erika; Couvillion, Sneha P.; Bloodsworth, Kent J.; Satpathy, Shankha; Sieh, Weiva; Boca, Simina M.; Schurer, Stephan; Chen, Feng; Wiznerowicz, Maciej; Ketchum, Karen A.; Boja, Emily S.; Kinsinger, Christopher R.; Robles, Ana; Hiltke, Tara; Thiagarajan,Mathangi; Nesvizhskii, Alexey; Zhang, Bing; Mani, D. R.; Ceccarelli, Michele; Chen, Xi S.; Cottingham, Sandra L.; Li, Qing Kay; Kim, Albert H.; Fenyo, David; Ruggles, Kelly; Rodriguez, Henry; Mesri, Mehdi; Payne, Samuel H.; Resnick, Adam C.; Wang, Pei; Smith, Richard D.; Iavarone, Antonio; Chheda, Milan G.; Barnholtz-Sloan, Jill S.; Rodland, Karin D.; Liu, Tao; Ding, Li
  3. Cancer Cell. 2021, Apr 12; 39(4): 509-528.e20.
  1. 4.   Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
  2. Huang, Chen; Chen, Lijun; Savage, Sara R.; Eguez, Rodrigo Vargas; Dou, Yongchao; Li, Yize; Leprevost, Felipe da Veiga; Jaehnig, Eric J.; Lei, Jonathan T.; Wen, Bo; Schnaubelt, Michael; Krug, Karsten; Song, Xiaoyu; Cieslik, Marcin; Chang, Hui-Yin; Wyczalkowski, Matthew A.; Li, Kai; Colaprico, Antonio; Li, Qing Kay; Clark, David J.; Hu, Yingwei; Cao, Liwei; Pan, Jianbo; Wang, Yuefan; Cho, Kyung-Cho; Shi, Zhiao; Liao, Yuxing; Jiang, Wen; Anurag, Meenakshi; Ji, Jiayi; Yoo, Seungyeul; Zhou, Daniel Cui; Liang, Wen-Wei; Wendl, Michael; Vats, Pankaj; Carr, Steven A.; Mani, D. R.; Zhang, Zhen; Qian, Jiang; Chen, Xi S.; Pico, Alexander R.; Wang, Pei; Chinnaiyan, Arul M.; Ketchum, Karen A.; Kinsinger, Christopher R.; Robles, Ana; An, Eunkyung; Hiltke, Tara; Mesri, Mehdi; Thiagarajan,Mathangi; Weaver, Alissa M.; Sikora, Andrew G.; Lubinski, Jan; Wierzbicka, Malgorzata; Wiznerowicz, Maciej; Satpathy, Shankha; Gillette, Michael A.; Miles, George; Ellis, Matthew J.; Omenn, Gilbert S.; Rodriguez, Henry; Boja, Emily S.; Dhanasekaran, Saravana M.; Ding, Li; Nesvizhskii, Alexey; El-Naggar, Adel K.; Chan, Daniel W.; Zhang, Hui; Zhang, Bing
  3. Cancer Cell. 2021, Mar 8; 39(3): 361-379.
  1. 5.   Prostate cancer evolution from multilineage primary to single lineage metastases with implications for liquid biopsy
  2. Woodcock, D J; Riabchenko, E; Taavitsainen, S; Kankainen, M; Gundem, G; Brewer, D S; Ellonen, P; Lepistö, M; Golubeva, Y A; Warner,Andrew; Tolonen, T; Jasu, J; Isaacs, W B; Emmert-Buck, M R; Nykter, M; Visakorpi, T; Bova, G S; Wedge, D C
  3. Nature communications. 2020, OCT 8; 11(1): 5070.
  1. 6.   Single cell-derived primary rectal carcinoma cell lines reflect intratumor heterogeneity associated with treatment response
  2. Braun, Rüdiger; Anthuber, Lena; Hirsch, Daniela; Wangsa, Darawalee; Lack,Justin; McNeil, Nicole E; Heselmeyer-Haddad, Kerstin; Torres, Irianna; Wangsa, Danny; Brown, Markus A; Tubbs, Anthony; Auslander, Noam; Gertz, E Michael; Brauer, Philip R; Cam,Maggie; Sackett, Dan; Habermann, Jens K; Nussenzweig, Andre; Ruppin, Eytan; Zhang, Zhongqiu; Rosenberg, Daniel W; Ried, Thomas
  3. Clinical cancer research : an official journal of the American Association for Cancer Research. 2020, JUL; 26(13): 3468-3480.
  1. 7.   Assaying Homodimers of NF-?B in Live Single Cells
  2. Martin, Erik W; Chakraborty, Sayantan; Presman, Diego M; Tomassoni Ardori,Francesco; Oh, Kyu-Seon; Kaileh, Mary; Tessarollo,Lino; Sung, Myong-Hee
  3. Frontiers in immunology. 2019, Nov 7; 10: 2609.
  1. 8.   Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data
  2. Gao, Galen F; Parker, Joel S; Reynolds, Sheila M; Silva, Tiago C; Wang, Liang-Bo; Zhou, Wanding; Akbani, Rehan; Bailey, Matthew; Balu, Saianand; Berman, Benjamin P; Brooks, Denise; Chen, Hu; Cherniack, Andrew D; Demchok, John A; Ding, Li; Felau, Ina; Gaheen,Sharon; Gerhard, Daniela S; Heiman, David I; Hernandez, Kyle M; Hoadley, Katherine A; Jayasinghe, Reyka; Kemal, Anab; Knijnenburg, Theo A; Laird, Peter W; Mensah, Michael K A; Mungall, Andrew J; Robertson, A Gordon; Shen, Hui; Tarnuzzer, Roy; Wang, Zhining; Wyczalkowski, Matthew; Yang, Liming; Zenklusen, Jean C; Zhang, Zhenyu; Liang, Han; Noble, Michael S
  3. Cell systems. 2019, Jul 24; 9(1): 24-34.e10.
  1. 9.   Association ofTNFRSF1BPromoter Polymorphisms with Human Disease: Further Studies Examining T-Regulatory Cells Are Required
  2. Li, Hongchuan; Anderson, Steve
  3. Frontiers in immunology. 2018, Mar 6; 9: 443.
  1. 10.   A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data
  2. Gonzalez, J. R.; Rodriguez-Santiago, B.; Caceres, A.; Pique-Regi, R.; Rothman, N.; Chanock, S. J.; Armengol, L.; Perez-Jurado, L. A.
  3. Bmc Bioinformatics. 2011, May; 12: 11.
  1. 11.   Mosaic Uniparental Disomies and Aneuploidies as Large Structural Variants of the Human Genome
  2. Rodriguez-Santiago, B.; Malats, N.; Rothman, N.; Armengol, L.; Garcia-Closas, M.; Kogevinas, M.; Villa, O.; Hutchinson, A.; Earl, J.; Marenne, G.; Jacobs, K.; Rico, D.; Tardon, A.; Carrato, A.; Thomas, G.; Valencia, A.; Silverman, D.; Real, F. X.; Chanock, S. J.; Perez-Jurado, L. A.
  3. American Journal of Human Genetics. 2010, Jul; 87(1): 129-138.
  1. 12.   Simultaneous Recovery of DNA and RNA from Formalin-Fixed Paraffin-Embedded Tissue and Application in Epidemiologic Studies
  2. Huang, W. Y.; Sheehy, T. M.; Moore, L. E.; Hsing, A. W.; Purdue, M. P.
  3. Cancer Epidemiology Biomarkers & Prevention. 2010, Apr; 19(4): 973-977.
  1. 13.   Host genes associated with HIV/AIDS: advances in gene discovery
  2. An, P.; Winkler, C. A.
  3. Trends in Genetics. 2010, Mar; 26(3): 119-131.
  1. 14.   MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains
  2. Akagi, K.; Stephens, R. M.; Li, J. F.; Evdokimov, E.; Kuehn, M. R.; Volfovsky, N.; Symer, D. E.
  3. Nucleic Acids Research. 2010, Jan; 38(Database issue): D600-D606.
  1. 15.   SLC6A3 and body mass index in the Prostate, Lung, Colorectal and Ovarian Cancer Screening Trial
  2. Azzato, E. M.; Morton, L. M.; Bergen, A. W.; Wang, S. S.; Chatterjee, N.; Kvale, P.; Yeager, M.; Hayes, R. B.; Chanock, S. J.; Caporaso, N. E.
  3. BMC Medical Genetics. 2009 10: 1-9.
  1. 16.   CCL3L1 and HIV/AIDS susceptibility
  2. Urban, T. J.; Weintrob, A. C.; Fellay, J.; Colombo, S.; Shianna, K. V.; Gumbs, C.; Rotger, M.; Pelak, K.; Dang, K. K.; Detels, R.; Martinson, J. J.; O'Brien, S. J.; Letvin, N. L.; McMichael, A. J.; Haynes, B. F.; Carrington, M.; Telenti, A.
  3. Nature Medicine. 2009 15(10): 1110-1112.
  1. 17.   Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition
  2. Akagi, K.; Li, J. F.; Stephens, R. M.; Volfovsky, N.; Symer, D. E.
  3. Genome Research. 2008 18(6): 869-880.
  1. 18.   cis sequence effects on gene expression
  2. Bergen, A. W.; Baccarelli, A.; McDaniel, T. K.; Kuhn, K.; Pfeiffer, R.; Kakol, J.; Bender, P.; Jacobs, K.; Packer, B.; Chanock, S. J.; Yeager, M.
  3. Bmc Genomics. 2007, Aug; 8
  1. 19.   Somatic sequence alterations in twenty-one genes selected by expression profile analysis of breast carcinomas
  2. Chanock, S. J.; Burdett, L.; Yeager, M.; Llaca, V.; Langerod, A.; Presswalla, S.; Kaaresen, R.; Strausberg, R. L.; Gerhard, D. S.; Kristensen, V.; Perou, C. M.; Borresen-Dale, A. L.
  3. Breast Cancer Research. 2007 9(1):
  1. 20.   Global gene expression associated with hepatocarcinogenesis in adult male mice induced by in utero arsenic exposure
  2. Liu, J.; Xie, Y. X.; Ducharme, D. M. K.; Shen, J.; Diwan, B. A.; Merrick, B. A.; Grissom, S. F.; Tucker, C. J.; Paules, R. S.; Tennant, R.; Waalkes, M. P.
  3. Environmental Health Perspectives. 2006, MAR; 114(3): 404-411.
  1. 21.   IL-3-mediated TNF production is necessary for mast cell development
  2. Wright, H. V.; Bailey, D.; Kashyap, M.; Kepley, C. L.; Drutskaya, M. S.; Nedospasov, S. A.; Ryan, J. J.
  3. Journal of Immunology. 2006, FEB 15; 176(4): 2114-2121.
  1. 22.   Molecular replacement with pseudosymmetry and model dissimilarity: a case study
  2. Jaskolski, M.; Li, M.; Laco, G.; Gustchina, A.; Wlodawer, A.
  3. Acta Crystallographica Section D-Biological Crystallography. 2006, FEB; 62(Part 2): 208-215.
  1. 23.   Unknown biological mixtures evaluation using STR analytical quantification
  2. Shrestha, S.; Strathdee, S. A.; Broman, K. W.; Smith, M. W.
  3. Electrophoresis. 2006, FEB; 27(2): 409-415.
  1. 24.   Innate immune dysfunction in HIV infection: Effect of HIV envelope-NK cell interactions
  2. Kottilil, S.; Shin, K.; Jackson, J. O.; Reitano, K. N.; O'Shea, M. A.; Yang, J.; Hallahan, C. W.; Lempicki, R.; Arthos, J.; Fauci, A. S.
  3. Journal of Immunology. 2006, JAN 15; 176(2): 1107-1114.
  1. 25.   Combining proteasome inhibition with TNF-related apoptosis-inducing ligand (Apo2L/TRAIL) for cancer therapy
  2. Sayers, T. J.; Murphy, W. J.
  3. Cancer Immunology Immunotherapy. 2006, JAN; 55(1): 76-84.
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