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  1. 1.   Graphite-Templated Amyloid Nanostructures Formed by a Potential Pentapeptide Inhibitor for Alzheimer's Disease: A Combined Study of Real-Time Atomic Force Microscopy and Molecular Dynamics Simulations
  2. Li, Na; Jang, Hyunbum; Yuan, Ming; Li, Wanrong; Yun, Xiaolin; Lee, Joon; Du, Qiqige; Nussinov, Ruth; Hou, Jiahua; Lal, Ratnesh; Zhang, Feng
  3. Langmuir. 2017, Jul 11; 33(27): 6647-6656.
  1. 2.   Polymorphic Triple beta-Sheet Structures Contribute to Amide Hydrogen/Deuterium (H/D) Exchange Protection in the Alzheimer Amyloid beta 42 Peptide
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2011, Sep; 286(39): 34244-34253.
  1. 3.   Polymorphism of amyloid beta peptide in different environments: implications for membrane insertion and pore formation
  2. Arce, F. T.; Jang, H. B.; Ramachandran, S.; Landon, P. B.; Nussinov, R.; Lal, R.
  3. Soft Matter. 2011, Jun 7; 7(11): 5267-5273.
  1. 4.   The Unique Alzheimer's beta-Amyloid Triangular Fibril Has a Cavity along the Fibril Axis under Physiological Conditions
  2. Miller, Y.; Ma, B. Y.; Nussinov, R.
  3. Journal of the American Chemical Society. 2011, Mar; 133(8): 2742-2748.
  1. 5.   Polymorphic C-terminal beta-Sheet Interactions Determine the Formation of Fibril or Amyloid beta-derived Diffusible Ligand-like Globulomer for the Alzheimer A beta 42 Dodecamer
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2010, Nov; 285(47): 37102-37110.
  1. 6.   Structural Convergence Among Diverse, Toxic beta-Sheet Ion Channels
  2. Jang, H.; Arce, F. T.; Ramachandran, S.; Capone, R.; Lal, R.; Nussinov, R.
  3. Journal of Physical Chemistry B. 2010, Jul 29; 114(29): 9445-9451.
  1. 7.   Annular structures as intermediates in fibril formation of Alzheimer A beta(17-42)
  2. Zheng, J.; Jang, H.; Ma, B.; Nussinov, R.
  3. Journal of Physical Chemistry B. 2008 112(22): 6856-6865.
  1. 8.   Molecular dynamics simulations of Alzheimer A beta(40) elongation and lateral association
  2. Zheng, J.; Ma, B. Y.; Chang, Y.; Nussinov, R.
  3. Frontiers in Bioscience. 2008 13: 3919-3930.
  1. 9.   Modeling the Alzheimer A beta(17-42) fibril architecture: Tight intermolecular sheet-sheet association and intramolecular hydrated cavities
  2. Zheng, J.; Jang, H.; Ma, B.; Tsai, C. J.; Nussinov, R.
  3. Biophysical Journal. 2007, Nov; 93(9): 3046-3057.
  1. 10.   Hydrazone- and hydrazide-containing N-substituted glycines as peptoid surrogates for expedited library synthesis: Application to the preparation of Tsg101-directed HIV-1 budding antagonists
  2. Liu, F.; Stephen, A. G.; Adamson, C. S.; Gousset, K.; Aman, M. J.; Freed, E. O.; Fisher, R. J.; Burke, T. R.
  3. Organic Letters. 2006, Oct; 8(22): 5165-5168.
  1. 11.   VP35 knockdown inhibits Ebola virus amplification and protects against lethal infection in mice
  2. Enterlein, S.; Warfield, K. L.; Swenson, D. L.; Stein, D. A.; Smith, J. L.; Gamble, C. S.; Kroeker, A. D.; Iversen, P. L.; Bavari, S.; Muhlberger, E.
  3. Antimicrobial Agents and Chemotherapy. 2006, Mar; 50(3): 984-993.
  1. 12.   Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: Significant role of Asn ladder
  2. Tsai, H. H.; Reches, M.; Tsai, C. J.; Gunasekaran, K.; Gazit, E.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, JUN 7; 102(23): 8174-8179.
  1. 13.   Prediction of multimolecular assemblies by multiple docking
  2. Inbar, Y.; Benyamini, H.; Nussinov, R.; Wolfson, H. J.
  3. Journal of Molecular Biology. 2005, JUN 3; 349(2): 435-447.
  1. 14.   A comparative study of amyloid fibril formation by residues 15-19 of the human calcitonin hormone: A single beta-sheet model with a small hydrophobic core
  2. Haspel, N.; Zanuy, D.; Ma, B. Y.; Wolfson, H.; Nussinov, R.
  3. Journal of Molecular Biology. 2005, FEB 4; 345(5): 1213-1227.
  1. 15.   Is allostery an intrinsic property of all dynamic proteins?
  2. Gunasekaran, K.; Ma, B. Y.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2004, NOV 15; 57(3): 433-443.
  1. 16.   Short peptide amyloid organization: Stabilities and conformations of the islet amyloid peptide NFGAIL
  2. Zanuy, D.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2003 84(3): 1884-1894.
  1. 17.   The sequence dependence of fiber organization. A comparative molecular dynamics study of the islet amyloid polypeptide segments 22-27 and 22-29
  2. Zanuy, D.; Nussinov, R.
  3. Journal of Molecular Biology. 2003 329(3): 565-584.
  1. 18.   In vivo oligomerization and raft localization of Ebola virus protein VP40 during vesicular budding
  2. Panchal, R. G.; Ruthel, G.; Kenny, T. A.; Kallstrom, G. H.; Lane, D.; Badie, S. S.; Li, L. M.; Bavari, S.; Aman, M. J.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2003 100(26): 15936-15941.
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