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  1. 1.   Antisense transcription from lentiviral gene targeting linked to an integrated stress response in colorectal cancer cells
  2. Ha, Taekyu; DiPrima, Michael; Koparde,Vishal; Jailwala,Parthav; Ohnuki, Hidetaka; Feng, Jing-Xin; Palangat, Murali; Larson, Daniel; Tosato, Giovanna
  3. Molecular Therapy. Nucleic Acids. 2022, Jun 14; 28: 877-891.
  1. 2.   Probing Cellular Processes with Oligo-Mediated Recombination and Using the Knowledge Gained to Optimize Recombineering
  2. Sawitzke, J. A.; Costantino, N.; Li, X. T.; Thomason, L. C.; Bubunenko, M.; Court, C.; Court, D. L.
  3. Journal of Molecular Biology. 2011, Mar; 407(1): 45-59.
  1. 3.   Understanding the effects of carbocyclic sugars constrained to north and south conformations on RNA nanodesign
  2. Kim, T.; Barchi, J. J.; Marquez, V. E.; Shapiro, B. A.
  3. Journal of Molecular Graphics & Modelling. 2011, Feb; 29(5): 624-634.
  1. 4.   Structural modifications of nucleosides in ionic liquids
  2. Kumar, V.; Parmar, V. S.; Malhotra, S. V.
  3. Biochimie. 2010, Sep; 92(9): 1260-1265.
  1. 5.   Quantitative Analysis of MAP-Mediated Regulation of Microtubule Dynamic Instability In Vitro-Focus on Tau
  2. Kiris, E.; Ventimiglia, D.; Feinstein, S. C.
  3. Methods in cell biology. 2010; 95 : 481-503.
  1. 6.   Oligonucleotide recombination in Gram-negative bacteria
  2. Swingle, B.; Markel, E.; Costantino, N.; Bubunenko, M. G.; Cartinhour, S.; Court, D. L.
  3. Molecular Microbiology. 2010, Jan; 75(1): 138-148.
  1. 7.   Synthesis and Hybridization Properties of Modified Oligodeoxynucleotides Carrying Non-Natural Bases
  2. Avino, A.; Perez-Rentero, S.; Garibotti, A. V.; Siddiqui, M. A.; Marquez, V. E.; Eritja, R.
  3. Chemistry & Biodiversity. 2009 6(2): 117-126.
  1. 8.   Methods for the analysis of HIV-1 nucleocapsid protein interactions with oligonucleotides
  2. Stephen, A. G.; Fisher, R. J.
  3. Methods in molecular biology (Clifton, N.J.). 2009 485: 209-221.
  1. 9.   Multicopy plasmid modification with phage lambda red recombineering
  2. Thomason, L. C.; Costantino, N.; Shaw, D. V.; Court, D. L.
  3. Plasmid. 2007, Sep; 58(2): 148-158.
  1. 10.   The history of N-methanocarbathymidine: The investigation of a conformational concept leads to the discovery of a potent and selective nucleoside antiviral agent
  2. Marquez, V. E.; Hughes, S. H.; Sei, S.; Agbaria, R.
  3. Antiviral Research. 2006, Sep; 71(2-3): 268-275.
  1. 11.   A set of recombineering plasmids for gram-negative bacteria
  2. Datta, S.; Costantino, N.; Court, D. L.
  3. Gene. 2006, Sep; 379: 109-115.
  1. 12.   Antisense treatments for biothreat agents
  2. Warfield, K. L.; Panchal, R. G.; Aman, M. J.; Bavari, S.
  3. Current Opinion in Molecular Therapeutics. 2006, Apr; 8(2): 93-103.
  1. 13.   Long homopurine center dot homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region
  2. Bacolla, A.; Collins, J. R.; Gold, B.; Chuzhanova, N.; Yi, M.; Stephens, R. M.; Stefanov, S.; Olsh, A.; Jakupciak, J. P.; Dean, M.; Lempicki, R. A.; Cooper, D. N.; Wells, R. D.
  3. Nucleic Acids Research. 2006 34(9): 2663-2675.
  1. 14.   Complex interactions of HIV-1 nucleocapsid protein with oligonucleotides
  2. Fisher, R. J.; Fivash, M. J.; Stephen, A. G.; Hagan, N. A.; Shenoy, S. R.; Medaglia, M. V.; Smith, L. R.; Worthy, K. M.; Simpson, J. T.; Shoemaker, R.; McNitt, K. L.; Johnson, D. G.; Hixson, C. V.; Gorelick, R. J.; Fabris, D.; Henderson, L. E.; Rein, A.
  3. Nucleic Acids Research. 2006 34(2): 472-484.
  1. 15.   Understanding how the herpes thymidine kinase orchestrates optimal sugar and nucleobase conformations to accommodate its substrate at the active site: A chemical approach
  2. Marquez, V. E.; Choi, Y.; Comin, M. J.; Russ, P.; George, C.; Huleihel, M.; Ben-Kasus, T.; Agbaria, R.
  3. Journal of the American Chemical Society. 2005, NOV 2; 127(43): 15145-15150.
  1. 16.   Investigating HIV-1 polypurine tract geometry via targeted insertion of abasic lesions in the (-)-DNA template and (+)-RNA primer
  2. Yi-Brunozzi, H. Y.; Le Grice, S. F. J.
  3. Journal of Biological Chemistry. 2005, MAY 20; 280(20): 20154-20162.
  1. 17.   Simple and highly efficient BAC recombineering using gaIK selection
  2. Warming, S.; Costantino, N.; Court, D. L.; Jenkins, N. A.; Copeland, N. G.
  3. Nucleic Acids Research. 2005 33(4, Art. No. e36):
  1. 18.   Human immunodeficiency virus type 1-induced macrophage gene expression includes the p21 gene, a target for viral regulation
  2. Vazquez, N.; Greenwell-Wild, T.; Marinos, N. J.; Swaim, W. D.; Nares, S.; Ott, D. E.; Schubert, U.; Henklein, P.; Orenstein, J. M.; Sporn, M. B.; Wahl, S. M.
  3. Journal of Virology. 2005 79(7): 4479-4491.
  1. 19.   Morphogenesis during Xenopus gastrulation requires Wee1-mediated inhibition of cell proliferation
  2. Murakami, M. S.; Moody, S. A.; Daar, I. O.; Morrison, D. K.
  3. Development. 2004 131(3): 571-580.
  1. 20.   In vivo recombineering of bacteriophage lambda by PCR fragments and single-strand oligonucleotides
  2. Oppenheim, A. B.; Rattray, A. J.; Bubunenko, M.; Thomason, L. C.; Court, D. L.
  3. Virology. 2004 319(2): 185-189.
  1. 21.   PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from Human Immunodeficiency Virus-1
  2. Sismour, A. M.; Lutz, S.; Park, J. H.; Lutz, M. J.; Boyer, P. L.; Hughes, S. H.; Benner, S. A.
  3. Nucleic Acids Research. 2004 32(2): 728-735.
  1. 22.   Development of multiplex DNA electronic microarrays using a universal adaptor system for detection of single nucleotide polymorphisms
  2. Tsang, S.; Sun, Z. H.; Stewart, C.; Lum, N.; Frankenberger, C.; Subleski, M.; Rasmussen, L.; Munroe, D. J.
  3. Biotechniques. 2004 36(4): 682-688.
  1. 23.   Caught in the act: visualization of an intermediate in the DNA base-flipping pathway induced by Hhal methyltransferase
  2. Horton, J. R.; Ratner, G.; Banavali, N. K.; Huang, N.; Choi, Y.; Maier, M. A.; Marquez, V. E.; Mackerell, A. D.; Cheng, X. D.
  3. Nucleic Acids Research. 2004 32(13): 3877-3886.
  1. 24.   PROSIT: Pseudo-Rotational Online Service and Interactive Tool, applied to a conformational survey of nucleosides and nucleotides
  2. Sun, G.; Voigt, J. H.; Filippov, I. V.; Marquez, V. E.; Nicklaus, M. C.
  3. Journal of Chemical Information and Computer Sciences. 2004, SEP-OCT; 44(5): 1752-1762.
  1. 25.   Potent inhibition of HhaI DNA methylase by the aglycon of 2-(1H)-pyrimidinone riboside (Zebularine) at the G(C)under-barGC recognition domain
  2. Marquez, V. E.; Eritja, R.; Kelley, J. A.; Vanbemmel, D.; Christman, J.
  3. THERAPEUTIC OLIGONUCLEOTIDES. 2003; 1002 : 154-164.
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