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  1. 1.   Clinical and molecular characterization of children and adults with respiratory bocavirus infection in Mexico: a cross-sectional nested study within the ILI002 prospective observational study
  2. Gamiño-Arroyo, Ana Estela; Arellano-Galindo, José; Del Carmen Guerra-de-Blas, Paola; Ortega-Villa, Ana M; Mateja,Allyson; Llamosas-Gallardo, Beatriz; Ortíz-Hernández, Ana A; Valdéz-Vázquez, Rafael; Ramírez-Venegas, Alejandra; Galindo-Fraga, Arturo; Guerrero, Ma Lourdes; Ramos-Cervantes, Pilar; Mendoza-Garcés, Luis; González-Matus, Mónica; Marroquín-Rojas, Carmen; Xicohtencatl-Cortes, Juan; Ochoa, Sara A; Cruz-Córdova, Ariadna; Powers,John; Ruiz-Palacios, Guillermo Miguel; Beigel, John; Moreno-Espinosa, Sarbelio
  3. Lancet Regional Health. Americas. 2024, Jan; 29: 100647.
  1. 2.   Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States
  2. Kassaye, Seble G; Grossman, Zehava; Vengurlekar, Priyanka; Chai, William; Wallace, Megan; Rhee, Soo-Yon; Meyer, William A; Kaufman, Harvey W; Castel, Amanda; Jordan, Jeanne; Crandall, Keith A; Kang, Alisa; Kumar, Princy; Katzenstein, David A; Shafer, Robert W; Maldarelli,Frank
  3. Viruses. 2022, Dec 25; 15(1):
  1. 3.   Feline Leukemia Virus Frequently Spills Over from Domestic Cats to North American Pumas
  2. Petch, Raegan J; Gagne, Roderick B; Chiu, Elliott; Mankowski, Clara; Rudd, Jaime; Roelke-Parker,Melody; Vickers, T Winston; Logan, Kenneth A; Alldredge, Mathew; Clifford, Deana; Cunningham, Mark W; Onorato, Dave; VandeWoude, Sue
  3. Journal of Virology. 2022, Dec 14; 96(23): e0120122.
  1. 4.   Source identification of HIV-1 transmission in three lawsuits Using Ultra-Deep pyrosequencing and phylogenetic analysis
  2. Li, Wei-You; Huang,Szu-Wei; Wang, Sheng-Fan; Liu, Hsin-Fu; Chou, Chih-Hung; Wu, Shang-Jung; Huang, Hsien-Da; Lu, Po-Liang; Fann, Cathy S J; Chen, Marcelo; Chen, Yen-Hsu; Chen, Yi-Ming Arthur
  3. Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi. 2021, Aug; 54(4): 596-605.
  1. 5.   Diversity and Complexity of the Large Surface Protein Family in the Compacted Genomes of Multiple Pneumocystis Species
  2. Ma, Liang; Chen, Zehua; Huang,Dawei; Cissé, Ousmane H; Rothenburger, Jamie L; Latinne, Alice; Bishop, Lisa; Blair, Robert; Brenchley, Jason M; Chabé, Magali; Deng, Xilong; Hirsch, Vanessa; Keesler, Rebekah; Kutty, Geetha; Liu, Yueqin; Margolis, Daniel; Morand, Serge; Pahar, Bapi; Peng, Li; Van Rompay, Koen K A; Song, Xiaohong; Song, Jun; Sukura, Antti; Thapar, Sabrina; Wang, Honghui; Weissenbacher-Lang, Christiane; Xu, Jie; Lee, Chao-Hung; Jardine, Claire; Lempicki, Richard A; Cushion, Melanie T; Cuomo, Christina A; Kovacs, Joseph A
  3. mBio. 2020, Mar-Apr; 11(2):
  1. 6.   Transmission Dynamics of HIV Subtype A in Tel Aviv, Israel: Implications for HIV Spread and Eradication
  2. Grossman,Zehava; Avidor, Boaz; Girshengoren, Shirley; Katchman, Eugene; Maldarelli,Frank; Turner, Dan
  3. Open forum infectious diseases. 2019, Jul; 6(7): pii: ofz304..
  1. 7.   Review: HIV-1 phylogeny during suppressive antiretroviral therapy
  2. Bale,Michael; Kearney,Mary
  3. Current opinion in HIV and AIDS. 2019, MAY; 14(3): 188-193.
  1. 8.   Genomic diversity and phylogenetic relationships of human papillomavirus 16 (HPV16) in Nepal
  2. Makowsky, R.; Lhaki, P.; Wiener, H. W.; Bhatta, M. P.; Cullen, Michael; Johnson, D. C.; Perry, R. T.; Lama, M.; Boland, Joseph; Yeager, M.; Ghimire, S.; Broker, T. R.; Shrestha, S.
  3. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2016, Dec; 46: 7-11.
  1. 9.   Gene flow and pathogen transmission among bobcats (Lynx rufus) in a fragmented urban landscape
  2. Lee, J. S.; Ruell, E. W.; Boydston, E. E.; Lyren, L. M.; Alonso, R. S.; Troyer, J. L.; Crooks, K. R.; Vande Woude, S.
  3. Molecular Ecology. 2012, Apr; 21(7): 1617-1631.
  1. 10.   Adaptive evolution of the matrix extracellular phosphoglycoprotein in mammals
  2. Machado, J. P.; Johnson, W. E.; O'Brien, S. J.; Vasconcelos, V.; Antunes, A.
  3. Bmc Evolutionary Biology. 2011, Nov; 11
  1. 11.   FIV diversity: FIV(Ple) subtype composition may influence disease outcome in African lions
  2. Troyer, J. L.; Roelke, M. E.; Jespersen, J. M.; Baggett, N.; Buckley-Beason, V.; MacNulty, D.; Craft, M.; Packer, C.; Pecon-Slattery, J.; O'Brien, S. J.
  3. Veterinary Immunology and Immunopathology. 2011, Oct; 143(3-4): 338-346.
  1. 12.   Carnivore-Specific SINEs (Can-SINEs): Distribution, Evolution, and Genomic Impact
  2. Walters-Conte, K. B.; Johnson, D. L. E.; Allard, M. W.; Pecon-Slattery, J.
  3. Journal of Heredity. 2011, Sep-Oct; 102: S2-S10.
  1. 13.   Common carp have two subclasses of bonyfish specific antibody IgZ showing differential expression in response to infection
  2. Ryo, S.; Wijdeven, R. H. M.; Tyagi, A.; Hermsen, T.; Kono, T.; Karunasagar, I.; Rombout, J.; Sakai, M.; Verburg-van Kemenade, B. M. L.; Savan, R.
  3. Developmental and Comparative Immunology. 2010, Nov; 34(11): 1183-1190.
  1. 14.   Restrictions to cross-species transmission of lentiviral infection gleaned from studies of FIV
  2. Vande Woude, S.; Troyer, J.; Poss, M.
  3. Veterinary Immunology and Immunopathology. 2010, Mar; 134(1-2): 25-32.
  1. 15.   Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary
  2. Krause, J.; Unger, T.; Nocon, A.; Malaspinas, A. S.; Kolokotronis, S. O.; Stiller, M.; Soibelzon, L.; Spriggs, H.; Dear, P. H.; Briggs, A. W.; Bray, S.; O'Brien, S. J.; Rabeder, G.; Matheus, P.; Cooper, A.; Slatkin, M.; Paabo, S.; Hofreiter, M.
  3. Bmc Evolutionary Biology. 2008 8 AR 220 DI 10.1186/: 220-220.
  1. 16.   The ancestral carnivore karyotype (2n=38) lives today in ringtails
  2. Nash, W. G.; Menninger, J. C.; Padilla-Nash, H. M.; Stone, G.; Perelman, P. L.; O'Brien, S. J.
  3. Journal of Heredity. 2008 99(3): 241-253.
  1. 17.   Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild
  2. Pecon-Slattery, J.; McCracken, C. L.; Troyer, J. L.; Vande Woude, S.; Roelke, M.; Sondgeroth, K.; Winterbach, C.; Winterbach, H.; O'Brien, S. J.
  3. Bmc Genomics. 2008 9(66): 1-13.
  1. 18.   A family matter: Conclusive resolution of the taxonomic position of the long-fingered bats, Miniopterus
  2. Miller-Butterworth, C. M.; Murphy, W. J.; O'Brien, S. J.; Jacobs, D. S.; Springer, M. S.; Teeling, E. C.
  3. Molecular Biology and Evolution. 2007, Jul; 24(7): 1553-1561.
  1. 19.   Phenotypic and genotypic comparisons of human T-cell leukemia virus type I reverse transcriptases from infected T-cell lines and patient samples
  2. Mitchell, M. S.; Bodine, E. T.; Hill, S.; Princler, G.; Lloyd, P.; Mitsuya, H.; Matsuoka, M.; Derse, D.
  3. Journal of Virology. 2007, May; 81(9): 4422-4428.
  1. 20.   Worldwide occurrence of feline hernoplasma infections in wild felid species
  2. Willi, B.; Filoni, C.; Catao-Dias, J. L.; Cattori, V.; Meli, M. L.; Vargas, A.; Martinez, F.; Roelke, M. E.; Ryser-Degiorgis, M. P.; Leutenegger, C. M.; Lutz, H.; Hofmann-Lehmann, R.
  3. Journal of Clinical Microbiology. 2007, Apr; 45(4): 1159-1166.
  1. 21.   T-lymphocyte profiles in FIV-infected wild lions and pumas reveal CD4 depletion
  2. Roelke, M. E.; Pecon-Slattery, J.; Taylor, S.; Citino, S.; Brown, E.; Packer, C.; Vande Woude, S.; O'Brien, S. J.
  3. Journal of Wildlife Diseases. 2006, Apr; 42(2): 234-248.
  1. 22.   Structure and age of genetic diversity of dengue virus type 2 in Thailand
  2. Zhang, C. L.; Marnmen, M. P.; Chinnawirotpisan, P.; Klungthong, C.; Rodpradit, P.; Nisalak, A.; Vaughn, D. W.; Nimmannitya, S.; Kalayanarooj, S.; Holmes, E. C.
  3. Journal of General Virology. 2006, Apr; 87: 873-883.
  1. 23.   Paths of lateral gene transfer of lysyl-aminoacyl-tRNA synthetases with a unique evolutionary transition stage of prokaryotes coding for class I and II varieties by the same organisms
  2. Shaul, S.; Nussinov, R.; Pupko, T.
  3. Bmc Evolutionary Biology. 2006, Mar; 6
  1. 24.   Evolutionary analysis of a large mtDNA translocation (numt) into the nuclear genome of the Panthera genus species
  2. Kim, J. H.; Antunes, A.; Luo, S. J.; Menninger, J.; Nash, W. G.; O'Brien, S. J.; Johnson, W. E.
  3. Gene. 2006, Feb; 366(2): 292-302.
  1. 25.   The Late Miocene radiation of modern Felidae: A genetic assessment
  2. Johnson, W. E.; Eizirik, E.; Pecon-Slattery, J.; Murphy, W. J.; Antunes, A.; Teeling, E.; O'Brien, S. J.
  3. Science. 2006, JAN 6; 311(5757): 73-77.
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