Skip NavigationSkip to Content

NCI at Frederick Scientific Publications Advanced Search

Search

  1. NCI-F Publications

  2. Return to Quick Search
Search
  2. Year Published:

Your search returned 34 results.
User Information
Export Records
  1. 1.   Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing
  2. Xiao, Wenming; Ren, Luyao; Chen, Zhong; Fang, Li Tai; Zhao,Yongmei; Lack,Justin; Guan, Meijian; Zhu, Bin; Jaeger, Erich; Kerrigan, Liz; Blomquist, Thomas M.; Hung, Tiffany; Sultan, Marc; Idler, Kenneth; Lu, Charles; Scherer, Andreas; Kusko, Rebecca; Moos, Malcolm; Xiao, Chunlin; Sherry, Stephen T.; Abaan, Ogan D.; Chen, Wanqiu; Chen, Xin; Nordlund, Jessica; Liljedahl, Ulrika; Maestro, Roberta; Polano, Maurizio; Drabek, Jiri; Vojta, Petr; Koks, Sulev; Reimann, Ene; Madala, Bindu Swapna; Mercer, Timothy; Miller, Chris; Jacob, Howard; Truong, Tiffany; Moshrefi, Ali; Natarajan, Aparna; Granat, Ana; Schroth, Gary P.; Kalamegham, Rasika; Peters, Eric; Petitjean, Virginie; Walton,Ashley; Shen,Tsai-Wei; Talsania,Keyur; Vera, Cristobal Juan; Langenbach, Kurt; de Mars, Maryellen; Hipp, Jennifer A.; Willey, James C.; Wang, Jing; Shetty,Jyoti; Kriga,Yuliya; Raziuddin,Arati; Tran,Bao; Zheng, Yuanting; Yu, Ying; Cam, Margaret; Jailwala, Parthav; Meerzaman, Daoud; Chen, Qingrong; Yan, Chunhua; Ernest, Ben; Mehra, Urvashi; Jensen, Roderick; Jones, Wendell; Li, Jian-Liang; Papas, Brian N.; Pirooznia, Mehdi; Chen, Yun-Ching; Seifuddin, Fayaz; Li, Zhipan; Liu, Xuelu; Resch, Wolfgang; Wang, Jingya; Wu, Leihong; Yavas, Gokhan; Miles, Corey; Ning, Baitang; Tong, Weida; Mason, Christopher E.; Donaldson, Eric; Lababidi, Samir; Staudt, Louis M.; Tezak, Zivana; Hong, Huixiao; Wang, Charles; Shi, Leming
  3. Nature Biotechnology. 2021, Sep; 39(9): 1141-1150.
  1. 2.   Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing
  2. Fang, Li Tai; Zhu, Bin; Zhao,Yongmei; Chen, Wanqiu; Yang, Zhaowei; Kerrigan, Liz; Langenbach, Kurt; de Mars, Maryellen; Lu, Charles; Idler, Kenneth; Jacob, Howard; Zheng, Yuanting; Ren, Luyao; Yu, Ying; Jaeger, Erich; Schroth, Gary P.; Abaan, Ogan D.; Talsania,Keyur; Lack,Justin; Shen,Tsai-Wei; Chen, Zhong; Stanbouly, Seta; Tran,Bao; Shetty,Jyoti; Kriga,Yuliya; Meerzaman, Daoud; Nguyen, Cu; Petitjean, Virginie; Sultan, Marc; Cam, Margaret; Mehta,Monika; Hung, Tiffany; Peters, Eric; Kalamegham, Rasika; Sahraeian, Sayed Mohammad Ebrahim; Mohiyuddin, Marghoob; Guo, Yunfei; Yao, Lijing; Song, Lei; Lam, Hugo Y. K.; Drabek, Jiri; Vojta, Petr; Maestro, Roberta; Gasparotto, Daniela; Koks, Sulev; Reimann, Ene; Scherer, Andreas; Nordlund, Jessica; Liljedahl, Ulrika; Jensen, Roderick; Pirooznia, Mehdi; Li, Zhipan; Xiao, Chunlin; Sherry, Stephen T.; Kusko, Rebecca; Moos, Malcolm; Donaldson, Eric; Tezak, Zivana; Ning, Baitang; Tong, Weida; Li, Jing; Duerken-Hughes, Penelope; Catalanotti, Claudia; Maheshwari, Shamoni; Shuga, Joe; Liang, Winnie S.; Keats, Jonathan; Adkins, Jonathan; Tassone, Erica; Zismann, Victoria; McDaniel, Timothy; Trent, Jeffrey; Foox, Jonathan; Butler, Daniel; Mason, Christopher E.; Hong, Huixiao; Shi, Leming; Wang, Charles; Xiao, Wenming
  3. Nature biotechnology. 2021, Sep; 39(9): 1151-1160.
  1. 3.   SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach
  2. Wang,Mingyi; Luo,Wen; Jones,Kristine; Bian, Xiaopeng; Williams,Russell; Higson,Herbert; Wu,Dongjing; Hicks,Belynda; Yeager,Meredith; Zhu,Bin
  3. Scientific reports. 2020, Jul 30; 10(1): 12898.
  1. 4.   Comparative clinical and genomic analysis of neurofibromatosis type 2-associated cranial and spinal meningiomas
  2. Pemov, Alexander; Dewan, Ramita; Hansen, Nancy F; Chandrasekharappa, Settara C; Ray-Chaudhury, Abhik; Jones,Kristine; Luo,Wen; Heiss, John D; Mullikin, James C; Chittiboina, Prashant; Stewart, Douglas R; Asthagiri, Ashok R
  3. Scientific reports. 2020, Jul 28; 10(1): 12563.
  1. 5.   Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas
  2. Lazar, Alexander J.; McLellan, Michael D.; Bailey, Matthew H.; Miller, Christopher A.; Appelbaum, Elizabeth L.; Cordes, Matthew G.; Fronick, Catrina C.; Fulton, Lucinda A.; Fulton, Robert S.; Mardis, Elaine R.; Schmidt, Heather K.; Wong, Winghing; Wilson, Richard K.; Yellapantula, Venkata; Radenbaugh, Amie J.; Hoadley, Katherine A.; Hayes, D. Neil; Parker, Joel S.; Wilkerson, Matthew D.; Auman, J. Todd; Balu, Saianand; Bodenheimer, Tom; Hoyle, Alan P.; Jefferys, Stuart R.; Jones, Corbin D.; Lehmann, Kjong-Van; Meng, Shaowu; Mieczkowski, Piotr A.; Mose, Lisle E.; Perou, Charles M.; Roach, Jeffrey; Senbabaoglu, Yasin; Shi, Yan; Simons, Janae V.; Skelly, Tara; Soloway, Matthew G.; Tan, Donghui; Veluvolu, Umadevi; Davis, Ian J.; Hepperla, Austin J.; Brohl, Andrew S.; Kasaian, Katayoon; Mungall, Karen; Sadeghi, Sara; Barthel, Floris P.; Verhaak, Roel; Hu, Xin; Chibon, Frederic; Cherniack, Andrew D.; Shih, Juliann; Beroukhim, Rameen; Meyerson, Matthew; Cibulskis, Carrie; Gabriel, Stacey B.; Saksena, Gordon; Schumacher, Steven E.; Bailey, Matthew H.; Gao, Qingsong; Wong, Winghing; Wyczalkowski, Matthew; Bowlby, Reanne; Robertson, A. Gordon; Ally, Adrian; Balasundaram, Miruna; Brooks, Denise; Carlsen, Rebecca; Chuah, Eric; Dhalla, Noreen; Holt, Robert A.; Jones, Steven J. M.; Lee, Darlene; Li, Irene; Ma, Yussanne; Marra, Marco A.; Mayo, Michael; Moore, Richard A.; Mungall, Andrew J.; Parker, Joel S.; Schein, Jacqueline E.; Sipahimalani, Payal; Tam, Angela; Thiessen, Nina; Wong, Tina; Danilova, Ludmila; Cope, Leslie; Baylin, Stephen B.; Bootwalla, Moiz S.; Lai, Phillip H.; Laird, Peter W.; Maglinte, Dennis T.; Van Den Berg, David J.; Weisenberger, Daniel J.; Wrangle, John; Drill, Esther; Shen, Ronglai; Iype, Lisa; Reynolds, Sheila M.; Shmulevich, Ilya; Yau, Christina; Armenia, Joshua; Liu, Eric Minwei; Benz, Christopher; Pastore, Alessandro; Sanchez-Vega, Francisco; Schultz, Nikolaus; Akbani, Rehan; Hegde, Apurva M.; Liu, Wenbin; Lu, Yiling; Mills, Gordon B.; Weinstein, John N.; Roszik, Jason; Anur, Pavana; Spellman, Paul; Abeshouse, Adam; Chen, Hsiao-Wei; Gao, Jianjiong; Heins, Zachary; Kundra, Ritika; Larsson, Erik; Ochoa, Angelica; Sanchez-Vega, Francisco; Sander, Chris; Schultz, Nikolaus; Socci, Nicholas; Zhang, Hongxin; Noble, Michael S.; Heiman, David I.; Kim, Jaegil; Chin, Lynda; Getz, Gad; Cho, Juok; Defreitas, Timothy; Frazer, Scott; Gehlenborg, Nils; Lawrence, Michael S.; Lin, Pei; Meier, Sam; Voet, Doug; Zhang, Hailei; Byers, Lauren; Diao, Lixia; Gay, Carl M.; Wang, Jing; Newton, Yulia; Cooper, Lee A. D.; Gutman, David A.; Lazar, Alexander J.; Lee, Sanghoon; Nalisnik, Michael; Bowen, Jay; Gastier-Foster, Julie M.; Gerken, Mark; Helsel, Carmen; Hobensack, Shital; Leraas, Kristen M.; Lichtenberg, Tara M.; Ramirez, Nilsa C.; Wise, Lisa; Zmuda, Erik; Anderson, Matthew L.; Castro, Patricia; Ittmann, Michael; Gordienko, Elena; Paklina, Oxana; Setdikova, Galiya; Raut, Chandrajit P.; Karlan, Beth Y.; Lester, Jenny; Belyaev, Dmitry; Fulidou, Victoria; Potapova, Olga; Voronina, Olga; Demetri, George D.; Ramalingam, Suresh S.; Behera, Madhusmita; Delman, Keith; Owonikoko, Taofeek K.; Sica, Gabriel L.; Boyd, Jeff; Magliocco, Anthony; Salner, Andrew; Bennett, Joesph; Iacocca, Mary; Swanson, Patricia; Dottino, Peter; Kalir, Tamara; Pereira, Elena; Akeredolu, Teniola; Crain, Daniel; Curley, Erin; Gardner, Johanna; Mallery, David; Morris, Scott; Paulauskis, Joseph; Penny, Robert; Shelton, Candace; Shelton, Troy; Thompson, Eric; Hoon, Dave B.; Parfitt, Jeremy; Birrer, Michael; Karseladze, Apollon; Mariamidze, Armaz; Dao, Fanny; Levine, Douglas A.; Olvera, Narciso; Maki, Robert G.; Bartlett, John; Eschbacher, Jennifer; Dubina, Michael; Mozgovoy, Evgeny; Fedosenko, Konstantin; Manikhas, Georgy; Sekhon, Harman; Ramirez, Nilsa; Lazar, Alexander J.; Ingram, Davis R.; Torres, Keila E.; DiSaia, Phil; Godwin, Andrew K.; Godwin, Eryn M.; Kuo, Hanluen; Madan, Rashna; Reilly, Colleen; Adebamowo, Clement; Adebamowo, Sally N.; Bocklage, Therese; Higgins, Kelly; Martinez, Cathleen; Auman, J. Todd; Boice, Lori; Grilley-Olson, Juneko E.; Huang, Mei; Perou, Amy H.; Thorne, Leigh B.; Rathmell, W. Kimryn; Gutmann, David H.; Singer, Samuel; Chudamani, Sudha; Liu, Jia; Lolla, Laxmi; Naresh, Rashi; Pihl, Todd; Sun, Qiang; Wan, Yunhu; Wu, Ye; Felau, Ina; Zenklusen, Jean C.; Demchok, John A.; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Zhang, Jiashan (Julia); Demicco, Elizabeth G.; Doyle, Leona A.; Hornick, Jason L.; Lazar, Alexander J.; Rubin, Brian P.; de Rijn, Matt van; Demetri, George D.; Baker, Laurence; Grilley-Olson, Juneko E.; Iype, Lisa; Lazar, Alexander J.; Lichtenberg, Tara M.; Raut, Chandrajit P.; Riedel, Richard F.; Demicco, Elizabeth G.; Ding, Li; Ladanyi, Marc; Lazar, Alexander J.; Novak, Janet E.; Sanchez-Vega, Francisco; Singer, Samuel; Van Tine, Brian A.; Byers, Lauren; Cope, Leslie; Cherniack, Andrew D.; Cooper, Lee A. D.; Davis, Ian J.; Davis, Lara E.; Demetri, George D.; Doyle, Leona A.; Drill, Esther; Godwin, Andrew K.; Grilley-Olsen, Juneko E.; Gutmann, David H.; Hayes, D. Neil; Hepperla, Austin J.; Hoadley, Katherine A.; Hoon, Dave B.; Hornick, Jason L.; Iype, Lisa; Kim, Jaegil; Maki, Robert G.; Pollock, Raphael E.; Raut, Chandrajit P.; Riedel, Richard F.; Robertson, A. Gordon; Rubin, Brian P.; Shih, Juliann; Weinstein, John N.; Wong, Winghing; Akbani, Rehan; Anderson, Matthew L.; Anur, Pavana; Bailey, Matthew H.; Benz, Christopher; Bowen, Jay; Bowlby, Reanne; Brohl, Andrew S.; Cherniack, Andrew D.; Cooper, Lee A. D.; Cope, Leslie; Danilova, Ludmila; Davis, Lara E.; Demetri, George D.; Gay, Carl M.; Godwin, Andrew K.; Grilley-Olson, Juneko E.; Gutman, David A.; Hegde, Apurva M.; Jones, Kevin B.; Kasaian, Katayoon; Ladanyi, Marc; Lazar, Alexander J.; Lee, Sanghoon; Leraas, Kristen M.; Lichtenberg, Tara M.; Martignetti, John A.; McLellan, Michael D.; Miller, Christopher A.; Mungall, Karen; Nalisnik, Michael; Noble, Michael S.; Raut, Chandrajit P.; Riedel, Richard F.; Robertson, A. Gordon; Roszik, Jason; Sadeghi, Sara; Sanchez-Vega, Francisco; Shen, Ronglai; Shih, Juliann; Tong, Pan; Torres, Keila E.; Yau, Christina; Zenklusen, Jean C.
  3. Cell. 2017, Nov 02; 171(4): 950-965.
  1. 6.   Hematologically important mutations: The autosomal recessive forms of chronic granulomatous disease (second update)
  2. Roos, D.; Kuhns, D. B.; Maddalena, A.; Bustamante, J.; Kannengiesser, C.; de Boer, M.; van Leeuwen, K.; Koker, M. Y.; Wolach, B.; Roesler, J.; Malech, H. L.; Holland, S. M.; Gallin, J. I.; Stasia, M. J.
  3. Blood Cells Molecules and Diseases. 2010, Apr; 44(4): 291-299.
  1. 7.   Potent antibody-mediated neutralization and evolution of antigenic escape variants of simian immunodeficiency virus strain SIVmac239 in vivo
  2. Sato, S.; Yuste, E.; Lauer, W. A.; Chang, E. H.; Morgan, J. S.; Bixby, J. G.; Lifson, J. D.; Desrosiers, R. C.; Johnson, W. E.
  3. Journal of Virology. 2008 82(19): 9739-9752.
  1. 8.   Variants of CCR5, which are permissive for HIV-1 infection, show distinct functional responses to CCL3, CCL4 and CCL5
  2. Dong, H. F.; Wigmore, K.; Carrington, M. N.; Dean, M.; Turpin, J. A.; Howard, O. M. Z.
  3. Genes and Immunity. 2005, OCT; 6(7): 609-619.
  1. 9.   The Ter mutation in the dead end gene causes germ cell loss and testicular germ cell tumours
  2. Youngren, K. K.; Coveney, D.; Peng, X. N.; Bhattacharya, C.; Schmidt, L. S.; Nickerson, M. L.; Lamb, B. T.; Deng, J. M.; Behringer, R. R.; Capel, B.; Rubin, E. M.; Nadeau, J. H.; Matin, A.
  3. Nature. 2005, MAY 19; 435(7040): 360-364.
  1. 10.   Mutational analysis of the DEAD-box RNA helicase eIF4AII characterizes its interaction with transformation suppressor Pdcd4 and eIF4GI
  2. Zakowicz, H.; Yang, H. S.; Stark, C.; Wlodawer, A.; Laronde-Leblanc, N.; Colburn, N. H.
  3. Rna-a Publication of the Rna Society. 2005, MAR; 11(3): 261-274.
  1. 11.   PKC delta plays opposite roles in growth mediated by wild-type Kit and an oncogenic Kit mutant
  2. Jelacic, T.; Linnekin, D.
  3. Blood. 2005, MAR 1; 105(5): 1923-1929.
  1. 12.   Simple and highly efficient BAC recombineering using gaIK selection
  2. Warming, S.; Costantino, N.; Court, D. L.; Jenkins, N. A.; Copeland, N. G.
  3. Nucleic Acids Research. 2005 33(4, Art. No. e36):
  1. 13.   Is allostery an intrinsic property of all dynamic proteins?
  2. Gunasekaran, K.; Ma, B. Y.; Nussinov, R.
  3. Proteins-Structure Function and Bioinformatics. 2004, NOV 15; 57(3): 433-443.
  1. 14.   CYP1A1 and GSTM1 polymorphisms in relation to lung cancer risk in Chinese women
  2. Yang, X. H. R.; Wacholder, S.; Xu, Z. Y.; Dean, M.; Clark, V.; Gold, B.; Brown, L. M.; Stone, B. J.; Fraumeni, J. F.; Caporaso, N. E.
  3. Cancer Letters. 2004, OCT 28; 214(2): 197-204.
  1. 15.   Real-time gap ligase chain reaction: A rapid semiquantitative assay for detecting p53 mutation at low levels in surgical margins and lymph nodes from resected lung and head and neck tumors
  2. Harden, S. V.; Thomas, D. C.; Benoit, N.; Minhas, K.; Westra, W. H.; Califano, J. A.; Koch, W.; Sidransky, D.
  3. Clinical Cancer Research. 2004 10(7): 2379-2385.
  1. 16.   Two essential splice lariat branchpoint sequences in one intron in a xeroderma pigmentosum DNA repair gene: mutations result in reduced XPC mRNA levels that correlate with cancer risk
  2. Khan, S. G.; Metin, A.; Gozukara, E.; Inui, H.; Shahlavi, T.; Muniz-Medina, V.; Baker, C. C.; Ueda, T.; Aiken, J. R.; Schneider, T. D.; Kraemer, K. H.
  3. Human Molecular Genetics. 2004 13(3): 343-352.
  1. 17.   A germ-line insertion in the Birt-Hogg-Dube (BHD) gene gives rise to the Nihon rat model of inherited renal cancer
  2. Okimoto, K.; Sakurai, J.; Kobayashi, T.; Mitani, H.; Hirayama, Y.; Nickerson, M. L.; Warren, M. B.; Zbar, B.; Schmidt, L. S.; Hino, O.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2004 101(7): 2023-2027.
  1. 18.   In vivo recombineering of bacteriophage lambda by PCR fragments and single-strand oligonucleotides
  2. Oppenheim, A. B.; Rattray, A. J.; Bubunenko, M.; Thomason, L. C.; Court, D. L.
  3. Virology. 2004 319(2): 185-189.
  1. 19.   Ex vivo and in vivo biological effects of a truncated form of the receptor tyrosine kinase Stk when activated by interaction with the friend spleen focus-forming virus envelope glycoprotein or by point mutation
  2. Rulli, K.; Yugawa, T.; Hanson, C.; Thompson, D.; Ruscetti, S.; Nishigaki, K.
  3. Journal of Virology. 2004 78(9): 4573-4581.
  1. 20.   Phosphatidylinositol 3 '-kinase is required for growth of mast cells expressing the Kit catalytic domain mutant
  2. Shivakrupa, R.; Bernstein, A.; Watring, N.; Linnekin, D.
  3. Cancer Research. 2003 63(15): 4412-4419.
  1. 21.   Multiple interactions across the surface of the gp120 core structure determine the global neutralization resistance phenotype of human immunodeficiency virus type 1
  2. Bouma, P.; Leavitt, M.; Zhang, P. F.; Sidorov, I. A.; Dimitrov, D. S.; Quinnan, G. V.
  3. Journal of Virology. 2003 77(14): 8061-8071.
  1. 22.   Origin and utility of the reverse dot-blot
  2. Gold, B.
  3. Expert Review of Molecular Diagnostics. 2003 3(2): 143-152.
  1. 23.   Differences in electrostatic properties at antibody-antigen binding sites: Implications for specificity and cross- reactivity
  2. Sinha, N.; Mohan, S.; Lipschultz, C. A.; Smith-Gill, S. J.
  3. Biophysical Journal. 2002 83(6): 2946-2968.
  1. 24.   The gene for a variant form of the polyadenylation protein CstF-64 is on chromosome 19 and is expressed in pachytene spermatocytes in mice
  2. Dass, B.; McMahon, K. W.; Jenkins, N. A.; Gilbert, D. J.; Copeland, N. G.; MacDonald, C. C.
  3. Journal of Biological Chemistry. 2001 276(11): 8044-8050.
  1. 25.   Phosphatidylinositol 3 kinase contributes to the transformation of hematopoietic cells by the D816V c-Kit mutant
  2. Chian, R. J.; Young, S.; Danilkovitch-Miagkova, A.; Ronnstr, L.; Leonard, E.; Ferrao, P.; Ashman, L.; Linnekin, D.
  3. Blood. 2001 98(5): 1365-1373.
NCI at Frederick

You are leaving a government website.

This external link provides additional information that is consistent with the intended purpose of this site. The government cannot attest to the accuracy of a non-federal site.

Linking to a non-federal site does not constitute an endorsement by this institution or any of its employees of the sponsors or the information and products presented on the site. You will be subject to the destination site's privacy policy when you follow the link.

ContinueCancel