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  1. 1.   A robust fluorogenic substrate for chikungunya virus protease (nsP2) activity
  2. Makhaik, Sparsh; Rut, Wioletta; Choudhary, Shruti; Upadhyay, Tulsi; Hao, Chenzhou; Westberg, Michael; Bobst, Cedric; Yoo,Euna; Fejzo, Jasna; Lin, Michael Z; Bogyo, Matthew; Thompson, Paul; Drag, Marcin; Hardy, Jeanne A
  3. Protein Science : a publication of the Protein Society. 2025, Mar; 34(3): e70069.
  1. 2.   High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma
  2. Johnston, Michael J.; Nikolic, Ana; Ninkovic, Nicoletta; Guilhamon, Paul; Cavalli, Florence M. G.; Seaman,Steven; Zemp, Franz J.; Lee, John; Abdelkareem, Aly; Ellestad, Katrina; Murison, Alex; Kushida, Michelle M.; Coutinho, Fiona J.; Ma, Yussanne; Mungall, Andrew J.; Moore, Richard; Marra, Marco A.; Taylor, Michael D.; Dirks, Peter B.; Pugh, Trevor J.; Morrissy, Sorana; St Croix,Brad; Mahoney, Douglas J.; Lupien, Mathieu; Gallo, Marco
  3. GENOME RESEARCH. 2019, AUG; 29(8): 1211-1222.
  1. 3.   Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement
  2. Tuncbag, N.; Keskin, O.; Nussinov, R.; Gursoy, A.
  3. Proteins-Structure Function and Bioinformatics. 2012, Apr; 80(4): 1239-1249.
  1. 4.   Discovery of a novel hybrid from finasteride and epristeride as 5 alpha-reductase inhibitor
  2. Yao, Z. Y.; Xu, Y. J.; Zhang, M. M.; Jiang, S.; Nicklaus, M. C.; Liao, C. Z.
  3. Bioorganic & Medicinal Chemistry Letters. 2011, Jan; 21(1): 475-478.
  1. 5.   Clerodane Diterpenes from Casearia arguta That Act As Synergistic TRAIL Sensitizers
  2. Whitson, E. L.; Thomas, C. L.; Henrich, C. J.; Sayers, T. J.; McMahon, J. B.; McKee, T. C.
  3. Journal of Natural Products. 2010, Dec; 73(12): 2013-2018.
  1. 6.   Computational intelligence, bioinformatics and computational biology: A brief overview of methods, problems and perspectives
  2. Kasabov, N.; Sidorov, I. A.; Dimitrov, D. S.
  3. Journal of Computational and Theoretical Nanoscience. 2005, DEC; 2(4): 473-491.
  1. 7.   Preface - Protein-protein interactions: principles and prediction
  2. Nussinov, R.; Tsai, C. J.
  3. Physical Biology. 2005, JUN; 2(2):
  1. 8.   Periodicity, planarity, residual dipolar coupling, and structures
  2. Walsh, J. D.; Wang, Y. X.
  3. Journal of Magnetic Resonance. 2005, MAY; 174(1): 152-162.
  1. 9.   How similar are protein folding and protein binding nuclei? Examination of vibrational motions of energy hot spots and conserved residues
  2. Haliloglu, T.; Keskin, O.; Ma, B. Y.; Nussinov, R.
  3. Biophysical Journal. 2005, MAR; 88(3): 1552-1559.
  1. 10.   A molecular phylogeny for bats illuminates biogeography and the fossil record
  2. Teeling, E. C.; Springer, M. S.; Madsen, O.; Bates, P.; O'Brien, S. J.; Murphy, W. J.
  3. Science. 2005, JAN 28; 307(5709): 580-584.
  1. 11.   Protein-protein interactions: Hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: Implications for docking
  2. Li, X.; Keskin, O.; Ma, B. Y.; Nussinov, R.; Liang, J.
  3. Journal of Molecular Biology. 2004, NOV 26; 344(3): 781-795.
  1. 12.   Natural inhibitors of carcinogenesis
  2. Kinghorn, A. D.; Su, B. N.; Jang, D. S.; Chang, L. C.; Lee, D.; Gu, J. Q.; Carcache-Blanco, E. J.; Powlus, A. D.; Lee, S. K.; Park, E. J.; Cuendet, M.; Gills, J. J.; Bhat, K.; Park, H. S.; Mata-Greenwood, E.; Song, L. L.; Jong, M. H.; Pezzuto, J. M.
  3. Planta Medica. 2004, AUG; 70(8): 691-705.
  1. 13.   Protein-protein interactions: Coupling of structurally conserved residues and of hot spots across interfaces. implications for docking
  2. Halperin, I.; Wolfson, H.; Nussinov, R.
  3. Structure. 2004 12(6): 1027-1038.
  1. 14.   Novel cytotoxic diterpenes from Casearia arborea
  2. Beutler, J. A.; McCall, K. L.; Herbert, K.; Herald, D. L.; Pettit, G. R.; Johnson, T.; Shoemaker, R. H.; Boyd, M. R.
  3. Journal of Natural Products. 2000 63(5): 657-661.
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