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  1. 1.   SARS-CoV-2 papain-like protease (PLpro) plays multiple roles in regulating cellular proteins in the endoplasmic reticulum
  2. Yang,Mei; Mariano,Jennifer; Su, Rebecca; Smith, Christopher E; Das,Sudipto; Gill, Catherine; Andresson,Thorkell; Loncarek,Jadranka; Tsai,Yien Che; Weissman,Allan
  3. The Journal of Biological Chemistry. 2023, Dec; 299(12): 105346.
  1. 2.   PIM1 targeted degradation prevents the emergence of chemoresistance in prostate cancer
  2. Torres-Ayuso, Pedro; Katerji,Meghri; Mehlich, Dawid; Lookingbill, Sophia A; Sabbasani, Venkata R; Liou, Hope; Casillas, Andrea L; Chauhan, Shailender S; Serwa, Remigiusz; Rubin,Maxine; Marusiak, Anna A; Swenson, Rolf E; Warfel, Noel A; Brognard,John
  3. Cell Chemical Biology. 2023, Nov 16;
  1. 3.   Involvement of the N Domain Residues E34, K35, and R38 in the Functionally Active Structure of Escherichia coli Lon Protease
  2. Andrianova, A. G.; Kudzhaev, A. M.; Abrikosova, V. A.; Gustchina,Alla; Smirnov, I. V.; Rotanova, T. V.
  3. Acta Naturae. 2020, Oct-Dec; 12(4): 86-97.
  1. 4.   PML: Regulation and multifaceted function beyond tumor suppression
  2. Hsu, Kuo-Sheng; Kao, Hung-Ying
  3. Cell and Bioscience. 2018, Jan 25; 8: 5.
  1. 5.   A Pharmacologic Inhibitor of the Protease Taspase1 Effectively Inhibits Breast and Brain Tumor Growth
  2. Chen, D. Y.; Lee, Y.; Van Tine, B. A.; Searleman, A. C.; Westergard, T. D.; Liu, H.; Tu, H. C.; Takeda, S.; Dong, Y. Y.; Piwnica-Worms, D. R.; Oh, K. J.; Korsmeyer, S. J.; Hermone, A.; Gussio, R.; Shoemaker, R. H.; Cheng, E. H. Y.; Hsieh, J. J. D.
  3. Cancer Research. 2012, Feb; 72(3): 736-746.
  1. 6.   An overview of enzymatic reagents for the removal of affinity tags
  2. Waugh, D. S.
  3. Protein Expression and Purification. 2011, Dec; 80(2): 283-293.
  1. 7.   Structure of the N-terminal fragment of Escherichia coli Lon protease
  2. Li, M.; Gustchina, A.; Rasulova, F. S.; Melnikov, E. E.; Maurizi, M. R.; Rotanova, T. V.; Dauter, Z.; Wlodawer, A.
  3. Acta Crystallographica Section D-Biological Crystallography. 2010, Aug; 66: 865-873.
  1. 8.   Novel fold of VirA, a type III secretion system effector protein from Shigella flexneri
  2. Davis, J.; Wang, J. W.; Tropea, J. E.; Zhang, D.; Dauter, Z.; Waugh, D. S.; Wlodawer, A.
  3. Protein Science. 2008 17(12): 2167-2173.
  1. 9.   Host responses influence on the induction of lambda prophage
  2. Rokney, A.; Kobiler, O.; Amir, A.; Court, D. L.; Stavans, J.; Adhya, S.; Oppenheim, A. B.
  3. Molecular Microbiology. 2008 68(1): 29-36.
  1. 10.   The heavy metal cadmium induces valosin-containing protein (VCP)-mediated aggresome formation
  2. Song, C. C.; Xiao, Z.; Nagashima, K.; Li, C.; Lockett, S. J.; Dai, R. M.; Cho, E. H.; Conrads, T. P.; Veenstra, T. D.; Colburn, N. H.; Wang, Q.; Wang, J. M.
  3. Toxicology and Applied Pharmacology. 2008 228(3): 351-363.
  1. 11.   SNIP1 is a candidate modifier of the transcriptional activity of c-Myc on E box-dependent target genes
  2. Fujii, M.; Lyakh, L. A.; Bracken, C. P.; Fukuoka, J.; Hayakawa, M.; Tsukiyama, T.; Soil, S. J.; Harris, M.; Rocha, S.; Roche, K. C.; Tominaga, S. I.; Jen, J.; Perkins, N. D.; Lechleider, R. J.; Roberts, A. B.
  3. Molecular Cell. 2006, Dec; 24(5): 771-783.
  1. 12.   IL-7 promotes T cell proliferation through destabilization of p27(Kip1)
  2. Li, W. Q.; Jiang, Q.; Aleem, E.; Kaldis, P.; Khaled, A. R.; Durum, S. K.
  3. Journal of Experimental Medicine. 2006, Mar; 203(3): 573-582.
  1. 13.   Progressive phenotype and nuclear accumulation of an amino-terminal cleavage fragment in a transgenic mouse model with inducible expression of full-length mutant huntingtin
  2. Tanaka, Y.; Igarashi, S.; Nakamura, M.; Gafni, J.; Torcassi, C.; Schilling, G.; Crippen, D.; Wood, J. D.; Sawa, A.; Jenkins, N. A.; Copeland, N. G.; Borchelt, D. R.; Ross, C. A.; Ellerby, L. M.
  3. Neurobiology of Disease. 2006, FEB; 21(2): 381-391.
  1. 14.   Suppression of p65 phosphorylation coincides with inhibition of I kappa B alpha polyubiquitination and degradation
  2. Hu, J.; Haseebuddin, M.; Young, M.; Colburn, N. H.
  3. Molecular Carcinogenesis. 2005, DEC; 44(4): 274-284.
  1. 15.   Fibril modelling by sequence and structure conservation analysis combined with protein docking techniques: beta 2-microglobulin amyloidosis
  2. Benyamini, H.; Gunasekaran, K.; Wolfson, H.; Nussinov, R.
  3. Biochimica Et Biophysica Acta-Proteins and Proteomics. 2005, NOV 10; 1753(1): 121-130.
  1. 16.   Crystal structure of the N-terminal domain of E-coli Lon protease
  2. Li, M.; Rasulova, F.; Melnikov, E. E.; Rotanova, T. V.; Gustchina, A.; Maurizi, M. R.; Wlodawer, A.
  3. Protein Science. 2005, NOV; 14(11): 2895-2900.
  1. 17.   Cockroach allergen Bla g 2: An unusual aspartic proteinase
  2. Wunschmann, S.; Gustchina, A.; Chapman, M. D.; Pomes, A.
  3. Journal of Allergy and Clinical Immunology. 2005, JUL; 116(1): 140-145.
  1. 18.   Actin-myosin-based contraction is responsible for apoptotic nuclear disintegration
  2. Croft, D. R.; Coleman, M. L.; Li, S. X.; Robertson, D.; Sullivan, T.; Stewart, C. L.; Olson, M. F.
  3. Journal of Cell Biology. 2005, JAN 17; 168(2): 245-255.
  1. 19.   A mutant ataxin-3 putative-cleavage fragment in brains of Machado-Joseph disease patients and transgenic mice is cytotoxic above a critical concentration
  2. Goti, D.; Katzen, S. M.; Mez, J.; Kurtis, N.; Kiluk, J.; Ben-Haiem, L.; Jenkins, N. A.; Copeland, N. G.; Kakizuka, A.; Sharp, A. H.; Ross, C. A.; Mouton, P. R.; Colomer, V.
  3. Journal of Neuroscience. 2004, NOV 10; 24(45): 10266-10279.
  1. 20.   In silico protein design by combinatorial assembly of protein building blocks
  2. Tsai, H. H.; Tsai, C. J.; Ma, B. Y.; Nussinov, R.
  3. Protein Science. 2004, OCT; 13(10): 2753-2765.
  1. 21.   A detergent- and cyanogen bromide-free method for integral membrane proteomics: Application to Halobacterium purple membranes and the human epidermal membrane proteome
  2. Blonder, J.; Conrads, T. P.; Yu, L. R.; Terunuma, A.; Janini, G. M.; Issaq, H. J.; Vogel, J. C.; Veenstra, T. D.
  3. Proteomics. 2004 4(1): 31-45.
  1. 22.   Molecular perspectives on p97-VCP: progress in understanding its structure and diverse biological functions
  2. Wang, Q.; Song, C. C.; Li, C. C. H.
  3. Journal of Structural Biology. 2004, APR-MAY; 146(1-2): 44-57.
  1. 23.   Crystallographic and biochemical investigations of kumamolisin-As, a serine-carboxyl peptidase with collagenase activity
  2. Wlodawer, A.; Li, M.; Gustchina, A.; Tsuruoka, N.; Ashida, M.; Minakata, H.; Oyama, H.; Oda, K.; Nishino, T.; Nakayama, T.
  3. Journal of Biological Chemistry. 2004 279(20): 21500-21510.
  1. 24.   Interdependence of backbone flexibility, residue conservation, and enzyme function: A case study on 1,4-galactosyltransferase- I
  2. Gunasekaran, K.; Ma, B. Y.; Ramakrishnan, B.; Qasba, P. K.; Nussinov, R.
  3. Biochemistry. 2003 42(13): 3674-3687.
  1. 25.   Reducing the computational complexity of protein folding via fragment folding and assembly
  2. Haspel, N.; Tsai, C. J.; Wolfson, H.; Nussinov, R.
  3. Protein Science. 2003 12(6): 1177-1187.
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