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  1. 1.   MoCoLo: a testing framework for motif co-localization
  2. Xu, Qi; Del Mundo, Imee M A; Zewail-Foote, Maha; Luke,Brian; Vasquez, Karen M; Kowalski, Jeanne
  3. Briefings in Bioinformatics. 2024, Jan 22; 25(2):
  1. 2.   On the nature of oxoiron (IV) intermediate in dioxygen activation by non-heme enzymes
  2. Nemukhin, A. V.; Topol, I. A.; Cachau, R. E.; Burt, S. K.
  3. Theoretical Chemistry Accounts. 2006, MAY; 115(5): 348-353.
  1. 3.   Solubility-enhancing proteins MBP and NusA play a passive role in the folding of their fusion partners
  2. Nallamsetty, S.; Waugh, D. S.
  3. Protein Expression and Purification. 2006, JAN; 45(1): 175-182.
  1. 4.   Nucleic acid binding and chaperone properties of HIV-1 Gag and nucleocapsid proteins
  2. Cruceanu, M.; Urbaneja, M. A.; Hixson, C. V.; Johnson, D. G.; Datta, S. A.; Fivash, M. J.; Stephen, A. G.; Fisher, R. J.; Gorelick, R. J.; Casas-Finet, J. R.; Rein, A.; Rouzina, I.; Williams, M. C.
  3. Nucleic Acids Research. 2006 34(2): 593-605.
  1. 5.   The RIO kinases: An atypical protein kinase family required for ribosome biogenesis and cell cycle progression
  2. Laronde-Leblanc, N.; Wlodawer, A.
  3. Biochimica Et Biophysica Acta-Proteins and Proteomics. 2005, DEC 30; 1754(1-2, Sp. Iss.): 14-24.
  1. 6.   Comparison of the NO and HNO donating properties of diazeniumdiolates: Primary amine adducts release HNO in vivo
  2. Miranda, K. M.; Katori, T.; de Holding, C. L. T.; Thomas, L.; Ridnour, L. A.; MeLendon, W. J.; Cologna, S. M.; Dutton, A. S.; Champion, H. C.; Mancardi, D.; Tocchetti, C. G.; Saavedra, J. E.; Keefer, L. K.; Houk, K. N.; Fukuto, J. M.; Kass, D. A.; Paolocci, N.; Wink, D. A.
  3. Journal of Medicinal Chemistry. 2005, DEC 29; 48(26): 8220-8228.
  1. 7.   Crystal structures for HIV-1 reverse transcriptase in complexes with three pyridinone derivatives: A new class of non-nucleoside inhibitors effective against a broad range of drug-resistant strains
  2. Himmel, D. M.; Das, K.; Clark, A. D.; Hughes, S. H.; Benjahad, A.; Oumouch, S.; Guillemont, J.; Coupa, S.; Poncelet, A.; Csoka, I.; Meyer, C.; Andries, K.; Nguyen, C. H.; Grierson, D. S.; Arnold, E.
  3. Journal of Medicinal Chemistry. 2005, DEC 1; 48(24): 7582-7591.
  1. 8.   An estrogen receptor chimera senses ligands by nuclear translocation
  2. Martinez, E. D.; Rayasam, G. V.; Dull, A. B.; Walker, D. A.; Hager, G. L.
  3. Journal of Steroid Biochemistry and Molecular Biology. 2005, DEC; 97(4): 307-321.
  1. 9.   The immunopharmacological properties of transforming growth factor beta
  2. Le, Y. Y.; Yu, X. J.; Ruan, L. F.; Wang, O. M.; Qi, D. F.; Zhu, J. J.; Lu, X. F.; Kong, Y.; Cai, K.; Pang, S. S.; Shi, X. L.; Wang, J. M.
  3. International Immunopharmacology. 2005, DEC; 5(13-14): 1771-1782.
  1. 10.   Association of human immunodeficiency virus type 1 gag with membrane does not require highly basic sequences in the nucleocapsid: Use of a novel gag multimerization assay
  2. Ono, A.; Waheed, A. A.; Joshi, A.; Freed, E. O.
  3. Journal of Virology. 2005, NOV; 79(22): 14131-14140.
  1. 11.   Human beta-defensins suppress human immunodeficiency virus infection: Potential role in mucosal protection
  2. Sun, L. L.; Finnegan, C. M.; Kish-Catalone, T.; Blumenthal, R.; Garzino-Demo, P.; Maggiore, G. M. L.; Berrone, S.; Kleinman, C.; Wu, Z. B.; Abdelwahab, S.; Lu, W. Y.; Garzino-Demo, A.
  3. Journal of Virology. 2005, NOV; 79(22): 14318-14329.
  1. 12.   A new synthetic agent with potent but selective cytotoxic activity against cancer
  2. Cholody, W. M.; Kosakowska-Cholody, T.; Hollingshead, M. G.; Hariprakasha, H. K.; Michejda, C. J.
  3. Journal of Medicinal Chemistry. 2005, JUN 30; 48(13): 4474-4481.
  1. 13.   Autoantigens act as tissue-specific chemoattractants
  2. Oppenheim, J. J.; Dong, H. F.; Plotz, P.; Caspi, R. R.; Dykstra, M.; Pierce, S.; Martin, R.; Carlos, C.; Finn, O.; Koul, O.; Howard, O. M. Z.
  3. Journal of Leukocyte Biology. 2005, JUN; 77(6): 854-861.
  1. 14.   Making the most of affinity tags
  2. Waugh, D. S.
  3. Trends in Biotechnology. 2005, JUN; 23(6): 316-320.
  1. 15.   Structure, stability, and NMR properties of lower fullerenes C-38-C-50 and azafullerene C44N6
  2. Sun, G. Y.; Nicklaus, M. C.; Xie, R. H.
  3. Journal of Physical Chemistry A. 2005, MAY 26; 109(20): 4617-4622.
  1. 16.   Structural determinants of HIV-1 nucleocapsid protein for cTAR DNA binding and destabilization, and correlation with inhibition of self-primed DNA synthesis
  2. Beltz, H.; Clauss, C.; Piemont, E.; Ficheux, D.; Gorelick, R. J.; Roques, B.; Gabus, C.; Darlix, J. L.; de Rocquigny, H.; Mely, Y.
  3. Journal of Molecular Biology. 2005, MAY 20; 348(5): 1113-1126.
  1. 17.   A paracrine signal mediates the cell transformation response to low dose gamma radiation in JB6 cells
  2. Weber, T. J.; Siegel, R. W.; Markille, L. M.; Chrisler, W. B.; Lei, X. Y. C.; Colburn, N. H.
  3. Molecular Carcinogenesis. 2005, MAY; 43(1): 31-37.
  1. 18.   Crystal structure of cockroach allergen Bla g 2, an unusual zinc binding aspartic protease with a novel mode of self-inhibition
  2. Gustchina, A.; Li, M.; Wunschmann, S.; Chapman, M. D.; Pomes, A.; Wlodawer, A.
  3. Journal of Molecular Biology. 2005, APR 29; 348(2): 433-444.
  1. 19.   Structural basis for the function of stringent starvation protein A as a transcription factor
  2. Hansen, A. M.; Gu, Y. J.; Li, M.; Andrykovitch, M.; Waugh, D. S.; Jin, D. J.; Ji, X. H.
  3. Journal of Biological Chemistry. 2005, APR 29; 280(17): 17380-17391.
  1. 20.   Substrate specificity of the human protein phosphatase 2C delta Wip1
  2. Yamaguchi, H.; Minopoli, G.; Demidov, O. N.; Chatterjee, D. K.; Anderson, C. W.; Durell, S. R.; Appella, E.
  3. Biochemistry. 2005, APR 12; 44(14): 5285-5294.
  1. 21.   Comparison of the protein-protein interfaces in the p53-DNA crystal structures: Towards elucidation of the biological interface
  2. Ma, B. Y.; Pan, Y. P.; Gunasekaran, K.; Venkataraghavan, R. B.; Levine, A. J.; Nussinov, R.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2005, MAR 15; 102(11): 3988-3993.
  1. 22.   Theoretical prediction of the catalytic properties for substituted salen-manganese compounds
  2. Abashkin, Y. G.; Burt, S. K.
  3. Abstracts of Papers of the American Chemical Society. 2005, MAR 13; 229(585-INOR, Part 1): U1052-U1052.
  1. 23.   (salen)Mn-III compounds as nonpeptidyl mimics of catalase. Mechanism-based tuning of catalase activity: A theoretical study
  2. Abashkin, Y. G.; Burt, S. K.
  3. Inorganic Chemistry. 2005, MAR 7; 44(5): 1425-1432.
  1. 24.   Mass spectrometric analysis of the HIV-1 integrase-pyridoxal 5 '-phosphate complex reveals a new binding site for a nucleotide inhibitor
  2. Williams, K. L.; Zhang, Y. J.; Shkriabai, N.; Karki, R. G.; Nicklaus, M. C.; Kotrikadze, N.; Hess, S.; Le Grice, S. F. J.; Craigie, R.; Pathak, V. K.; Kvaratskhelia, M.
  3. Journal of Biological Chemistry. 2005, MAR 4; 280(9): 7949-7955.
  1. 25.   High-resolution genome-wide mapping of transposon integration in mammals
  2. Yant, S. R.; Wu, X. L.; Huang, Y.; Garrison, B.; Burgess, S. M.; Kay, M. A.
  3. Molecular and Cellular Biology. 2005, MAR; 25(6): 2085-2094.
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