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  1. 1.   NMR probing of invisible excited states using selectively labeled RNAs
  2. Leblanc, Regan; Longhini, Andrew P; Tugarinov, Vitali; Dayie, T Kwaku
  3. Journal of Biomolecular NMR. 2018, Jul; 71(3): 165-172.
  1. 2.   Development of tricyclic hydroxy-1H-pyrrolopyridine-trione containing HIV-1 integrase inhibitors
  2. Zhao, X. Z.; Maddali, K.; Metifiot, M.; Smith, S. J.; Vu, B. C.; March, C.; Hughes, S. H.; Pommier, Y.; Burke, T. R.
  3. Bioorganic & Medicinal Chemistry Letters. 2011, May; 21(10): 2986-2990.
  1. 3.   Molecular-Level Examination of Cu2+ Binding Structure for Amyloid Fibrils of 40-Residue Alzheimer's beta by Solid-State NMR Spectroscopy
  2. Parthasarathy, S.; Long, F.; Miller, Y.; Xiao, Y. L.; McElheny, D.; Thurber, K.; Ma, B. Y.; Nussinov, R.; Ishii, Y.
  3. Journal of the American Chemical Society. 2011, Mar; 133(10): 3390-3400.
  1. 4.   Conformation dependence of pK(a)'s of the chromophores from the purple asFP595 and yellow zFP538 fluorescent proteins
  2. Nemukhin, A. V.; Topol, I. A.; Grigorenko, B. L.; Savitsky, A. P.; Collins, J. R.
  3. Journal of Molecular Structure-theochem. 2008 863(1-3): 39-43.
  1. 5.   Ground-state structures and vertical excitations for the kindling fluorescent protein asFP595
  2. Grigorenko, B.; Savitsky, A.; Topol, I.; Burt, S.; Nemukhin, A.
  3. Journal of Physical Chemistry B. 2006, Sep; 110(37): 18635-18640.
  1. 6.   Ab initio electronic structure theory as an aid to understanding excited state hydrogen transfer in moderate to large systems
  2. Webb, S. P.
  3. Theoretical Chemistry Accounts. 2006, Aug; 116(1-3): 355-372.
  1. 7.   Electronic excitations of the chromophore from the fluorescent protein asFP595 in solutions
  2. Nemukhin, A. V.; Topol, I. A.; Burt, S. K.
  3. Journal of Chemical Theory and Computation. 2006, Mar-Apr; 2(2): 292-299.
  1. 8.   Serotype-selective, small-molecule inhibitors of the zinc endopeptidase of botulinum neurotoxin serotype A
  2. Park, J. G.; Sill, P. C.; Makiyi, E. F.; Garcia-Sosa, A. T.; Millard, C. B.; Schmidt, J. J.; Pang, Y. P.
  3. Bioorganic & Medicinal Chemistry. 2006, Jan; 14(2): 395-408.
  1. 9.   Quantitative determination of antalarmin, a novel corticotropin-releasing hormone receptor-1 antagonist, in canine plasma by HPLC-MS
  2. Fox, S. D.; Roman, J. M.; Cizza, G.; Veenstra, T. D.; Issaq, H. J.
  3. Journal of Separation Science. 2005, MAR; 28(4): 332-336.
  1. 10.   Crystal structure of human glutathione S-transferase A3-3 and mechanistic implications for its high steroid isomerase activity
  2. Gu, Y. J.; Guo, J. X.; Pal, A.; Pan, S. S.; Zimniak, P.; Singh, S. V.; Ji, X. H.
  3. Biochemistry. 2004, DEC 21; 43(50): 15673-15679.
  1. 11.   Release factors eRF1 and RF2 - A universal mechanism controls the large conformational changes
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2004, DEC 17; 279(51): 53875-53885.
  1. 12.   Multiple proton translocation in biomolecular systems: concerted to stepwise transition in a simple model
  2. Kohanoff, J. J.; Cachau, R. E.
  3. Molecular Physics. 2004, MAY 10; 102(9-10): 1007-1014.
  1. 13.   (Salen)Mn(III) compound as a nonpeptidyl mimic of catalase: DFT study of the metal oxidation by a peroxide molecule
  2. Abashkin, Y. G.; Burt, S. K.
  3. Journal of Physical Chemistry B. 2004 108(8): 2708-2711.
  1. 14.   Improving the accuracy of NMR structures of large proteins using pseudocontact shifts as long-range restraints
  2. Gaponenko, V.; Sarma, S. P.; Altieri, A. S.; Horita, D. A.; Li, J.; Byrd, R. A.
  3. Journal of Biomolecular Nmr. 2004 28(3): 205-212.
  1. 15.   Identification of a new chondropsin class of antitumor compound that selectively inhibits V-ATPases
  2. Bowman, E. J.; Gustafson, K. R.; Bowman, B. J.; Boyd, M. R.
  3. Journal of Biological Chemistry. 2003 278(45): 44147-44152.
  1. 16.   Hydrogen bonds in human ubiquitin reflected in temperature coefficients of amide protons
  2. Cierpicki, T.; Zhukov, I.; Byrd, R. A.; Otlewski, J.
  3. Journal of Magnetic Resonance. 2002 157(2): 178-180.
  1. 17.   Modeling of biomolecular systems with the quantum mechanical and molecular mechanical method based on the effective fragment potential technique: Proposal of flexible fragments
  2. Grigorenko, B. L.; Nemukhin, A. V.; Topol, I. A.; Burt, S. K.
  3. Journal of Physical Chemistry A. 2002 106(44): 10663-10672.
  1. 18.   Low-energy collision-induced dissociation fragmentation analysis of cysteinyl-modified peptides
  2. Borisov, O. V.; Goshe, M. B.; Conrads, T. P.; Rakov, V. S.; Veenstra, T. D.; Smith, R. D.
  3. Analytical Chemistry. 2002 74(10): 2284-2292.
  1. 19.   Short-strong hydrogen bonds and a low barrier transition state for the proton transfer reaction in RNase A catalysis: a quantum chemical study
  2. Vishveshwara, S.; Madhusudhan, M. S.; Maizel, J. V.
  3. Biophysical Chemistry. 2001 89(2-3): 105-117.
  1. 20.   Discovery of a novel antitumor benzolactone enamide class that selectively inhibits mammalian vacuolar-type (H+)-ATPases
  2. Boyd, M. R.; Farina, C.; Belfiore, P.; Gagliardi, S.; Kim, J. W.; Hayakawa, Y.; Beutler, J. A.; McKee, T. C.; Bowman, B. J.; Bowman, E. J.
  3. Journal of Pharmacology and Experimental Therapeutics. 2001 297(1): 114-120.
  1. 21.   The Sos1-Rac1 signaling - Possible involvement of a vacuolar H+ -ATPase E subunit
  2. Miura, K.; Miyazawa, S.; Furuta, S.; Mitsushita, J.; Kamijo, K.; Ishida, H.; Miki, T.; Suzukawa, K.; Resau, J.; Copeland, T. D.; Kamata, T.
  3. Journal of Biological Chemistry. 2001 276(49): 46276-46283.
  1. 22.   Experimental determination and calculations of redox potential descriptors of compounds directed against retroviral zinc fingers: Implications for rational drug design
  2. Topol, I. A.; McGrath, C.; Chertova, E.; Dasenbrock, C.; Lacourse, W. R.; Eissenstat, M. A.; Burt, S. K.; Henderson, L. E.; Casas-Finet, J. R.
  3. Protein Science. 2001 10(7): 1434-1445.
  1. 23.   A new hybrid approach for modeling reactions in molecular clusters: Application for the hydrogen bonded systems
  2. Nemukhin, A. V.; Grigorenko, B. L.; Skasyrskaya, E. Y.; Topol, I. A.; Burt, S. K.
  3. Journal of Chemical Physics. 2000 112(2): 513-521.
  1. 24.   Calculation of substituent effects on pK(a) values for pyrone and dihydropyrone inhibitors of HIV-1 protease
  2. Topol, I. A.; Burt, S. K.; Rashin, A. A.; Erickson, J. W.
  3. Journal of Physical Chemistry. 2000 104(4): 866-872.
  1. 25.   Solution structure by NMR of circulin A: A macrocyclic knotted peptide having anti-HIV activity
  2. Daly, N. L.; Koltay, A.; Gustafson, K. R.; Boyd, M. R.; Casas-Finet, J. R.; Craik, D. J.
  3. Journal of Molecular Biology. 1999 285(1): 333-345.
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