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  1. 1.   Elements in the 5' Untranslated Region of Viral RNA Important for HIV Gag Recognition and Cross-Packaging
  2. Cheng,Zetao; Nikolaitchik,Olga; Duchon,Alice; Rawson, Jonathan M O; Pathak,Vinay; Hu,Wei-Shau
  3. Viruses. 2025, Apr 10; 17(4): 551.
  1. 2.   Antiretroviral Therapy within Two Years of HIV Acquisition is Associated with Fewer Viral Blips: A Retrospective Analysis of Over 20 Years of Data from the U.S. Military HIV Natural History Study
  2. Crowell, Trevor A; Hsieh, Hsing-Chuan; Wang, Xun; Chu, Xiuping; Gayle, Britt; Berjohn, Catherine M; Blaylock, Jason M; Yabes, Joseph M; Larson, Derek T; Powers,John; O'Connell, Robert J; Ganesan, Anuradha; Agan, Brian K
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2025, Mar 10;
  1. 3.   Data imbalance in drug response prediction: multi-objective optimization approach in deep learning setting
  2. Narykov, Oleksandr; Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Partin, Alexander; Xia, Fangfang; Shukla, Maulik; Vasanthakumari, Priyanka; Doroshow, James H; Stevens, Rick L
  3. Briefings in Bioinformatics. 2025, Mar 04; 26(2):
  1. 4.   Metabolic dependency mapping identifies Peroxiredoxin 1 as a driver of resistance to ATM inhibition
  2. Li, Haojian; Furusawa, Takashi; Cavero, Renzo; Xiao, Yunjie; Chari,Raj; Wu,Xiaolin; Sun, David; Hartmann, Oliver; Dhall, Anjali; Holewinski,Ronald; Andresson,Thorkell; Karim,Baktiar; Villamor-Payà, Marina; Gallardo, Devorah; Day, Chi-Ping; Pal, Lipika R; Nair, Nishanth Ulhas; Ruppin, Eytan; Aladjem, Mirit I; Pommier, Yves; Diefenbacher, Markus E; Lim, Jung Mi; Levine, Rodney L; Stracker, Travis H; Weyemi, Urbain
  3. Redox Biology. 2025, Jan 19; 80: 103503.
  1. 5.   Waterless structures in the Protein Data Bank
  2. Wlodawer,Alexander; Dauter, Zbigniew; Rubach, Pawel; Minor, Wladek; Loch, Joanna I; Brzezinski, Dariusz; Gilski, Miroslaw; Jaskolski, Mariusz
  3. IUCrJ. 2024, Nov 01;
  1. 6.   Insights into gemcitabine resistance in pancreatic cancer: association with metabolic reprogramming and TP53 pathogenicity in patient derived xenografts
  2. Konaté, Mariam M; Krushkal, Julia; Li, Ming-Chung; Chen, Li; Kotliarov, Yuri; Palmisano, Alida; Pauly,Rini; Xie, Qian; Williams, P Mickey; McShane, Lisa M; Zhao, Yingdong
  3. Journal of Translational Medicine. 2024, Aug 05; 22(1): 733.
  1. 7.   Multi-generational benefits of genetic rescue
  2. Onorato, Dave P; Cunningham, Mark W; Lotz, Mark; Criffield, Marc; Shindle, David; Johnson, Annette; Clemons, Bambi C F; Shea, Colin P; Roelke-Parker,Melody; Johnson, Warren E; McClintock, Brett T; Pilgrim, Kristine L; Schwartz, Michael K; Oli, Madan K
  3. Scientific reports. 2024, Jul 30; 14(1): 17519.
  1. 8.   Near-infrared duocarmycin photorelease from a Treg-targeted antibody-drug conjugate improves efficacy of PD-1 blockade in syngeneic murine tumor models
  2. Fukushima, Hiroshi; Furusawa, Aki; Takao, Seiichiro; Thankarajan Mini Mablet,Ebaston; Luciano, Michael P; Usama, Syed Muhammad; Kano, Makoto; Okuyama, Shuhei; Yamamoto, Hiroshi; Suzuki, Motofumi; Kano, Miyu; Choyke, Peter L; Schnermann,Martin; Kobayashi, Hisataka
  3. Oncoimmunology. 2024, Jun 20; 13(1): 2370544.
  1. 9.   Germline pathogenic variants associated with triple-negative breast cancer in US Hispanic and Guatemalan women using hospital and community-based recruitment strategies
  2. Godinez Paredes, Jesica M; Rodriguez, Isabel; Ren, Megan; Orozco, Anali; Ortiz, Jeremy; Albanez, Anaseidy; Jones, Catherine; Nahleh, Zeina; Barreda, Lilian; Garland,Lisa; Torres-Gonzalez, Edmundo; Wu,Dongjing; Luo,Wen; Liu,Jia; Argueta, Victor; Orozco, Roberto; Gharzouzi, Eduardo; Dean, Michael
  3. Breast Cancer Research and Treatment. 2024, Mar 23;
  1. 10.   Phototruncation cell tracking with near-infrared photoimmunotherapy using heptamethine cyanine dye to visualise migratory dynamics of immune cells
  2. Fukushima, Hiroshi; Furusawa, Aki; Takao, Seiichiro; Matikonda, Siddharth S; Kano, Makoto; Okuyama, Shuhei; Yamamoto, Hiroshi; Choyke, Peter L; Schnermann,Martin; Kobayashi, Hisataka
  3. EBioMedicine. 2024, Mar 14; 102: 105050.
  1. 11.   A Comprehensive Investigation of Active Learning Strategies for Conducting Anti-Cancer Drug Screening
  2. Vasanthakumari, Priyanka; Zhu, Yitan; Brettin, Thomas; Partin, Alexander; Shukla, Maulik; Xia, Fangfang; Narykov, Oleksandr; Weil,Michael; Stevens, Rick L
  3. Cancers. 2024, Jan 26; 16(3):
  1. 12.   Tumor Suppression by Anti-Fibroblast Activation Protein Near-Infrared Photoimmunotherapy Targeting Cancer-Associated Fibroblasts
  2. Glabman, Raisa A; Olkowski, Colleen P; Minor, Hannah A; Bassel,Laura; Kedei, Noemi; Choyke, Peter L; Sato, Noriko
  3. Cancers. 2024, Jan 20; 16(2):
  1. 13.   Long-term survivors of glioblastoma: Tumor molecular, clinical, and imaging findings
  2. Briceno, Nicole; Vera, Elizabeth; Komlodi-Pasztor, Edina; Abdullaev, Zied; Choi, Anna; Grajkowska, Ewa; Kunst, Tricia; Levine, Jason; Lindsley, Matthew; Fernandez, Kelly; Reyes, Jennifer; Boris,Lisa; Burton, Eric; Panzer, Marissa; Polskin, Lily; Penas-Prado, Marta; Pillai, Tina; Theeler, Brett J; Wu, Jing; Wall, Kathleen; Papanicolau-Sengos, Antonios; Quezado, Martha; Smirniotopoulos, James; Aldape, Kenneth; Armstrong, Terri S; Gilbert, Mark R
  3. Neuro-Oncology Advances. 2024, Jan-Dec; 6(1): vdae019.
  1. 14.   Acute-phase innate immune responses in SIVmac239-infected Mamu-B*08+ Indian rhesus macaques may contribute to the establishment of elite control
  2. Rosen, Brandon C; Sawatzki, Kaitlin; Ricciardi, Michael J; Smith, Elise; Golez, Inah; Mauter, Jack T; Pedreño-López, Núria; Yrizarry-Medina, Aaron; Weisgrau, Kim L; Vosler, Logan J; Voigt, Thomas B; Louw, Johan J; Tisoncik-Go, Jennifer; Whitmore, Leanne S; Panayiotou, Christakis; Ghosh, Noor; Furlott, Jessica R; Parks, Christopher L; Desrosiers, Ronald C; Lifson,Jeffrey; Rakasz, Eva G; Watkins, David I; Gale, Michael
  3. Frontiers in Immunology. 2024 15: 1478063.
  1. 15.   Recommendations for assessing appearance concerns related to plexiform and cutaneous neurofibromas in neurofibromatosis 1 clinical trials
  2. Merker, Vanessa L; Thompson, Heather L; Wolters, Pamela L; Buono, Frank D; Hingtgen, Cynthia M; Rosser, Tena; Barton, Belinda; Barnett, Carolina; Smith, Taylor; Haberkamp, Diana; McManus, Miranda L; Baldwin,Andrea; Moss, Irene P; Röhl, Claas; Martin, Staci
  3. Clinical Trials (London, England). 2023, Dec 23; 17407745231205577.
  1. 16.   Integration of Computational Docking into Anti-Cancer Drug Response Prediction Models
  2. Narykov, Oleksandr; Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Partin, Alexander; Shukla, Maulik; Xia, Fangfang; Clyde, Austin; Vasanthakumari, Priyanka; Doroshow, James H; Stevens, Rick L
  3. Cancers. 2023, Dec 21; 16(1):
  1. 17.   Methotrexate-based PROTACs as DHFR-specific chemical probes
  2. Rana, Sandeep; Dranchak, Patricia; Dahlin, Jayme L; Lamy, Laurence; Li,Wenqing; Oliphant, Erin; Shrimp, Jonathan H; Rajacharya, Girish H; Tharakan, Ravi; Holland, David O; Whitten, Apryl S; Wilson, Kelli M; Singh, Pankaj K; Durum,Scott; Tao, Dingyin; Rai, Ganesha; Inglese, James
  3. Cell Chemical Biology. 2023, Oct 17;
  1. 18.   Severe food allergy reactions are associated with a-tryptase
  2. Lang, Abigail; Kubala, Stephanie; Grieco, Megan C; Mateja,Allyson; Pongracic, Jacqueline; Liu, Yihui; Frischmeyer-Guerrerio, Pamela A; Kumar, Rajesh; Lyons, Jonathan J
  3. The Journal of Allergy and Clinical Immunology. 2023, Oct; 152(4): 933-939.
  1. 19.   Comparative analyses define differences between BHD-associated renal tumour and sporadic chromophobe renal cell carcinoma
  2. Jikuya, Ryosuke; Johnson, Todd A; Maejima, Kazuhiro; An, Jisong; Ju, Young-Seok; Lee, Hwajin; Ha, Kyungsik; Song, WooJeung; Kim, Youngwook; Okawa, Yuki; Sasagawa, Shota; Kanazashi, Yuki; Fujita, Masashi; Imoto, Seiya; Mitome, Taku; Ohtake, Shinji; Noguchi, Go; Kawaura, Sachi; Iribe, Yasuhiro; Aomori, Kota; Tatenuma, Tomoyuki; Komeya, Mitsuru; Ito, Hiroki; Ito, Yusuke; Muraoka, Kentaro; Furuya, Mitsuko; Kato, Ikuma; Fujii, Satoshi; Hamanoue, Haruka; Tamura, Tomohiko; Baba, Masaya; Suda, Toshio; Kodama, Tatsuhiko; Makiyama, Kazuhide; Yao, Masahiro; Shuch, Brian M; Ricketts, Christopher J; Schmidt,Laura; Linehan, W Marston; Nakagawa, Hidewaki; Hasumi, Hisashi
  3. EBioMedicine. 2023, May 12; 92: 104596.
  1. 20.   The Ribosomal S6 Kinase 2 (RSK2)-SPRED2 complex regulates phosphorylation of RSK substrates and MAPK signaling
  2. Lopez, Jocelyne; Bonsor,Daniel; Sale, Matthew J; Urisman, Anatoly; Mehalko,Jennifer; Cabanski-Dunning, Miranda; Castel, Pau; Simanshu,Dhirendra; McCormick, Frank
  3. The Journal of Biological Chemistry. 2023, May 04; 104789.
  1. 21.   An approach to rapid distributed manufacturing of broad spectrum anti-viral griffithsin using cell-free systems to mitigate pandemics
  2. Borhani, Shayan G; Levine, Max Z; Krumpe,Lauren; Wilson,Jennifer; Henrich,Curtis; O'Keefe,Barry; Lo, Donald C; Sittampalam, G Sitta; Godfrey, Alexander G; Lunsford, R Dwayne; Mangalampalli, Venkata; Tao, Dingyin; LeClair, Christopher A; Thole, Aaron P; Frey, Douglas; Swartz, James; Rao, Govind
  3. New Biotechnology. 2023, Apr 11; 76: 13-22.
  1. 22.   Assessment of a novel biliary-specific near-infrared fluorescent dye (BL-760) for intraoperative detection of bile ducts and biliary leaks during hepatectomy in a preclinical swine model
  2. Saruwatari, Michele S; Jawed, Kochai; Ali, Khalid M; Ning, Bo; Naik, Sailee; Nam, So-Hyun; Schnermann,Martin; Sandler, Anthony; Cha, Richard J
  3. Lasers in Surgery and Medicine. 2023, Apr 01;
  1. 23.   Redox phospholipidomics discovers pro-ferroptotic death signals in A375 melanoma cells in vitro and in vivo
  2. Tyurina, Yulia Y; Kapralov, Alexandr A; Tyurin, Vladimir A; Shurin, Galina; Amoscato, Andrew A; Rajasundaram, Dhivyaa; Tian, Hua; Bunimovich, Yuri L; Nefedova, Yulia; Herrick,William; Parchment,Ralph; Doroshow, James H; Bayir, Hulya; Srivastava,Apurva; Kagan, Valerian E
  3. Redox Biology. 2023, Feb 28; 61: 102650.
  1. 24.   Promiscuous splicing-derived hairpins are dominant substrates of tailing-mediated defense of miRNA biogenesis in mammals
  2. Lee, Seungjae; Jee, David; Srivastava, Sid; Yang,Acong; Ramidi, Abhinav; Shang, Renfu; Bortolamiol-Becet, Diane; Pfeffer, Sébastien; Gu,Shuo; Wen, Jiayu; Lai, Eric C
  3. Cell Reports. 2023, Feb 16; 42(2): 112111.
  1. 25.   Hydropersulfides (RSSH) attenuate doxorubicin-induced cardiotoxicity while boosting its anticancer action
  2. Pharoah, Blaze M; Zhang, Chengximeng; Khodade, Vinayak S; Keceli, Gizem; McGinity,Chris; Paolocci, Nazareno; Toscano, John P
  3. Redox Biology. 2023, Feb 04; 60: 102625.
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