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  1. 1.   In some cases more complicated approaches to refinement of macromolecular structures are not necessary
  2. Dauter, Zbigniew; Wlodawer,Alexander
  3. IUCrJ. 2024, Jul 01; 11(Pt 4): 643-644.
  1. 2.   Mechanism of lipid droplet formation by the yeast Sei1/Ldb16 Seipin complex
  2. Klug, Yoel A.; Deme, Justin C.; Corey, Robin A.; Renne, Mike F.; Stansfeld, Phillip J.; Lea, Susan M.; Carvalho, Pedro
  3. Nature Communications. 2021, Oct 8; 12(1):
  1. 3.   Molecular structure of the intact bacterial flagellar basal body
  2. Johnson, Steven; Furlong, Emily J.; Deme,Justin; Nord, Ashley L.; Caesar, Joseph J. E.; Chevance, Fabienne F. V.; Berry, Richard M.; Hughes, Kelly T.; Lea,Susan
  3. Nature Microbiology. 2021, Apr 30; 6(6): 712-721.
  1. 4.   Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED
  2. Zhu, Lan; Bu, Guanhong; Jing, Liang; Shi,Dan; Lee, Ming-Yue; Gonen, Tamir; Liu, Wei; Nannenga, Brent L
  3. Structure (London, England : 1993). 2020, OCT 6; 28(10): 1149-+.
  1. 5.   The upcoming subatomic resolution revolution
  2. Cachau,Raul; Zhu,Jianghai; Nicklaus,Marc
  3. Current opinion in structural biology. 2019, Oct; 58: 53-58.
  1. 6.   The mechanism of PI3K activation at the atomic level
  2. Zhang,Mingzhen; Jang,Hyunbum; Nussinov,Ruth
  3. Chemical science. 2019, Mar 28; 10(12): 3671-3680.
  1. 7.   Conformational energy range of ligands in protein crystal structures: The difficult quest for accurate understanding
  2. Peach, Megan; Cachau, Raul; Nicklaus, Marc
  3. JOURNAL OF MOLECULAR RECOGNITION. 2017, Aug; 30(8):
  1. 8.   Tail tubular protein A: a dual-function tail protein of Klebsiella pneumoniae bacteriophage KP32
  2. Pyra, Anna; Brzozowska, Ewa; Pawlik, Krzysztof; Gamian, Andrzej; Dauter, Miroslawa; Dauter, Zbigniew
  3. SCIENTIFIC REPORTS. 2017, May 22; 7
  1. 9.   Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement
  2. Tuncbag, N.; Keskin, O.; Nussinov, R.; Gursoy, A.
  3. Proteins-Structure Function and Bioinformatics. 2012, Apr; 80(4): 1239-1249.
  1. 10.   PDB Ligand Conformational Energies Calculated Quantum-Mechanically
  2. Sitzmann, M.; Weidlich, I. E.; Filippov, I. V.; Liao, C.; Peach, M. L.; Ihlenfeldt, W. D.; Karki, R. G.; Borodina, Y. V.; Cachau, R. E.; Nicklaus, M. C.
  3. Journal of Chemical Information and Modeling. 2012, Mar; 52(3): 739-756.
  1. 11.   SymmRef: A flexible refinement method for symmetric multimers
  2. Mashiach-Farkash, E.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2011, Sep; 79(9): 2607-2623.
  1. 12.   Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore
  2. Pletneva, N. V.; Pletnev, V. Z.; Shemiakina, II; Chudakov, D. M.; Artemyev, I.; Wlodawer, A.; Dauter, Z.; Pletnev, S.
  3. Protein Science. 2011, Jul; 20(7): 1265-1274.
  1. 13.   Protein structure prediction using a docking-based hierarchical folding scheme
  2. Kifer, I.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2011, Jun; 79(6): 1759-1773.
  1. 14.   Improved molecular replacement by density- and energy-guided protein structure optimization
  2. DiMaio, F.; Terwilliger, T. C.; Read, R. J.; Wlodawer, A.; Oberdorfer, G.; Wagner, U.; Valkov, E.; Alon, A.; Fass, D.; Axelrod, H. L.; Das, D.; Vorobiev, S. M.; Iwai, H.; Pokkuluri, P. R.; Baker, D.
  3. Nature. 2011, May; 473(7348): 540-U149.
  1. 15.   An integrated suite of fast docking algorithms
  2. Mashiach, E.; Schneidman-Duhovny, D.; Peri, A.; Shavit, Y.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2010, Nov; 78(15): 3197-3204.
  1. 16.   Unmet challenges of structural genomics
  2. Chruszcz, M.; Domagalski, M.; Osinski, T.; Wlodawer, A.; Minor, W.
  3. Current Opinion in Structural Biology. 2010, Oct; 20(5): 587-597.
  1. 17.   Proteins Do Not Have Strong Spines After All
  2. Dauter, Z.; Wlodawer, A.
  3. Structure. 2009 17(10): 1278-1279.
  1. 18.   A Method for Helical RNA Global Structure Determination in Solution Using Small-Angle X-Ray Scattering and NMR Measurements
  2. Wang, J. B.; Zuo, X. B.; Yu, P.; Xu, H.; Starich, M. R.; Tiede, D. M.; Shapiro, B. A.; Schwieters, C. D.; Wang, Y. X.
  3. Journal of Molecular Biology. 2009 393(3): 717-734.
  1. 19.   Determination of protein structures - A series of fortunate events
  2. Chruszcz, M.; Wlodawer, A.; Minor, W.
  3. Biophysical Journal. 2008 95(1): 1-9.
  1. 20.   Crystal structure of a dimerized cockroach allergen Bla g 2 complexed with a monoclonal antibody
  2. Li, M.; Gustchina, A.; Alexandratos, J.; Wlodawer, A.; Wunschmann, S.; Kepley, C. L.; Chapman, M. D.; Pomes, A.
  3. Journal of Biological Chemistry. 2008 283(33): 22806-22814.
  1. 21.   Global molecular structure and interfaces: Refining an RNA : RNA complex structure using solution X-ray scattering data
  2. Zuo, X. B.; Wang, J. B.; Foster, T. R.; Schwieters, C. D.; Tiede, D. M.; Butcher, S. E.; Wang, Y. X.
  3. Journal of the American Chemical Society. 2008 130(11): 3292-3293.
  1. 22.   Numerology versus reality: a voice in a recent dispute
  2. Jaskolski, M.; Gilski, M.; Dauter, Z.; Wlodawer, A.
  3. Acta Crystallographica Section D-Biological Crystallography. 2007, Dec; 63: 1282-1283.
  1. 23.   Atomic-resolution crystal structure of the antiviral lectin scytovirin
  2. Moulaei, T.; Botos, I.; Ziolkowska, N. E.; Bokesch, H. R.; Krumpe, L. R.; McKee, T. C.; O'Keefe, B. R.; Dauter, Z.; Wlodawer, A.
  3. Protein Science. 2007, Dec; 16(12): 2756-2760.
  1. 24.   Automatic prediction of protein interactions with large scale motion
  2. Schneidman-Duhovny, D.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2007, Dec; 69(4): 764-773.
  1. 25.   FireDock: Fast interaction refinement in molecular docking
  2. Andrusier, N.; Nussinov, R.; Wolfson, H. J.
  3. Proteins-Structure Function and Bioinformatics. 2007, Oct; 69(1): 139-159.
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