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  1. 1.   Elements in the 5' Untranslated Region of Viral RNA Important for HIV Gag Recognition and Cross-Packaging
  2. Cheng,Zetao; Nikolaitchik,Olga; Duchon,Alice; Rawson, Jonathan M O; Pathak,Vinay; Hu,Wei-Shau
  3. Viruses. 2025, Apr 10; 17(4): 551.
  1. 2.   Structure of Helicobacter pylori dihydroneopterin aldolase suggests a fragment-based strategy for isozyme-specific inhibitor design
  2. Shaw,Gary; Fan,Lixin; Cherry,Scott; Shi,Genbin; Tropea, Joseph E; Ji,Xinhua
  3. Current Research in Structural Biology. 2023, Jan 30; 5: 100095.
  1. 3.   Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States
  2. Kassaye, Seble G; Grossman, Zehava; Vengurlekar, Priyanka; Chai, William; Wallace, Megan; Rhee, Soo-Yon; Meyer, William A; Kaufman, Harvey W; Castel, Amanda; Jordan, Jeanne; Crandall, Keith A; Kang, Alisa; Kumar, Princy; Katzenstein, David A; Shafer, Robert W; Maldarelli,Frank
  3. Viruses. 2022, Dec 25; 15(1):
  1. 4.   The dynamic nature of the K-Ras/calmodulin complex can be altered by oncogenic mutations
  2. Abdelkarim, Hazem; Leschinsky, Nicholas; Jang, Hyunbum; Banerjee, Avik; Nussinov,Ruth; Gaponenko, Vadim
  3. Current Opinion in Structural Biology. 2021, Dec; 71: 164-170.
  1. 5.   Structural and genetic convergence of HIV-1 neutralizing antibodies in vaccinated non-human primates
  2. Cai, Fangping; Chen, Wei-Hung; Wu,Weimin; Jones, Julia A.; Choe, Misook; Gohain, Neelakshi; Shen, Xiaoying; LaBranche, Celia; Eaton, Amanda; Sutherland, Laura; Lee, Esther M.; Hernandez, Giovanna E.; Wu, Nelson R.; Scearce, Richard; Seaman, Michael S.; Moody, M. Anthony; Santra, Sampa; Wiehe, Kevin; Tomaras, Georgia D.; Wagh, Kshitij; Korber, Bette; Bonsignori, Mattia; Montefiori, David C.; Haynes, Barton F.; de Val, Natalia; Joyce, M. Gordon; Saunders, Kevin O.
  3. PLOS PATHOGENS. 2021, Jun; 17(6):
  1. 6.   Specific Guanosines in the HIV-2 Leader RNA Are Essential for Efficient Viral GenomePackaging
  2. Umunnakwe, Chijioke N; Duchon,Alice; Nikolaitchik,Olga; Abdul Rahman, Sheikh; Liu, Yang; Chen,Jianbo; Tai, Sheldon; Pathak,Vinay; Hu,Wei-Shau
  3. Journal of Molecular Biology. 2021, Jan 22; 433(2): pii: S0022-2836(20)30637-9.
  1. 7.   Active and Inactive Cdc42 Differ in Their Insert Region Conformational Dynamics
  2. Haspel, Nurit; Jang,Hyunbum; Nussinov,Ruth
  3. Biophysical journal. 2021, Jan 19; 120(2): 306-318.
  1. 8.   Ras assemblies and signaling at the membrane
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. Current opinion in structural biology. 2020, JUN; 62: 140-148.
  1. 9.   Custom DNA Microarrays Reveal Diverse Binding Preferences of Proteins and Small Molecules to Thousands of G-Quadruplexes
  2. Ray, Sreejana; Tillo, Desiree; Boer, Robert E.; Assad, Nima; Barshai, Mira; Wu, Guanhui; Orenstein, Yaron; Yang, Danzhou; Schneekloth,Jay; Vinson, Charles
  3. ACS CHEMICAL BIOLOGY. 2020, Apr 17; 15(4): 925-935.
  1. 10.   IgG3 enhances neutralization potency and Fc effector function of an HIV V2-specific broadly neutralizing antibody
  2. Richardson, Simone I; Lambson, Bronwen E; Crowley, Andrew R; Bashirova,Arman; Scheepers, Cathrine; Garrett, Nigel; Abdool Karim, Salim; Mkhize, Nonhlanhla N; Carrington,Mary; Ackerman, Margaret E; Moore, Penny L; Morris, Lynn
  3. PLoS pathogens. 2019, Dec 16; 15(12): e1008064.
  1. 11.   The Structural Basis of the Farnesylated and Methylated KRas4B Interaction with Calmodulin
  2. Jang,Hyunbum; Banerjee, Avik; Marcus, Kendra; Makowski, Lee; Mattos, Carla; Gaponenko, Vadim; Nussinov,Ruth
  3. Structure (London, England : 1993). 2019, Nov 5; 27(11): 1647-1659.e4.
  1. 12.   Complete Genome Sequence of Herpes Simplex Virus 1 Strain McKrae
  2. Jiao,Xiaoli; Sui,Hongyan; Lyons, Christopher; Tran,Bao; Sherman,Brad; Imamichi,Tomozumi
  3. Microbiology resource announcements. 2019, Sep 26; 8(39): pii: e00993-19. .
  1. 13.   KSHV RNA-binding protein ORF57 inhibits P-body formation to promote viral multiplication by interaction with Ago2 and GW182
  2. Sharma, Nishi R; Majerciak,Vladimir; Kruhlak, Michael J; Yu,Lulu; Kang, Jeong Gu; Yang,Acong; Gu,Shuo; Fritzler, Marvin J; Zheng,Zhi-Ming
  3. Nucleic acids research. 2019, SEP 26; 47(17): 9368-9385.
  1. 14.   Complete Genome Sequence of Herpes Simplex Virus 1 Strain MacIntyre
  2. Jiao,Xiaoli; Sui,Hongyan; Lyons, Christopher; Tran,Bao; Sherman,Brad; Imamichi,Tomozumi
  3. Microbiology resource announcements. 2019, Sep 12; 8(37): pii: e00895-19.
  1. 15.   RNA Packaging in HIV
  2. Rein,Alan
  3. Trends in microbiology. 2019, Aug; 27(8): 715-723.
  1. 16.   Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual
  2. Krebs, Shelly J.; Kwon, Young D.; Schramm, Chaim A.; Law, William H.; Donofrio, Gina; Zhou, Kenneth H.; Gift, Syna; Dussupt, Vincent; Georgiev, Ivelin S.; Schatzle, Sebastian; McDaniel, Jonathan R.; Lai, Yen-Ting; Sastry, Mallika; Zhang, Baoshan; Jarosinski, Marissa C.; Ransier, Amy; Chenine, Agnes L.; Asokan, Mangaiarkarasi; Bailer, Robert T.; Bose, Meera; Cagigi, Alberto; Cale, Evan M.; Chuang, Gwo-Yu; Darko, Samuel; Driscoll, Jefferson; Druz, Aliaksandr; Gorman, Jason; Laboune, Farida; Louder, Mark K.; McKee, Krisha; Mendez, Letzibeth; Moody, M. Anthony; O'Sullivan, Anne Marie; Owen, Christopher; Peng, Dongjun; Rawi, Reda; Sanders-Buell, Eric; Shen, Chen-Hsiang; Shiakolas, Andrea R.; Stephens,Tyler; Tsybovsky,Yaroslav; Tucker, Courtney; Verardi, Raffaello; Wang, Keyun; Zhou, Jing; Zhou, Tongqing; Georgiou, George; Alam, S. Munir; Haynes, Barton F.; Rolland, Morgane; Matyas, Gary R.; Polonis, Victoria R.; McDermott, Adrian B.; Douek, Daniel C.; Shapiro, Lawrence; Tovanabutra, Sodsai; Michael, Nelson L.; Mascola, John R.; Robb, Merlin L.; Kwong, Peter D.; Doria-Rose, Nicole A.
  3. IMMUNITY. 2019, MAR 19; 50(3): 677-+.
  1. 17.   Sex-specific gene and pathway modeling of inherited glioma risk
  2. Ostrom, Quinn T.; Coleman, Warren; Huang, William; Rubin, Joshua B.; Lathia, Justin D.; Berens, Michael E.; Speyer, Gil; Liao, Peter; Wrensch, Margaret R.; Eckel-Passow, Jeanette E.; Armstrong, Georgina; Rice, Terri; Wiencke, John K.; McCoy, Lucie S.; Hansen, Helen M.; Amos, Christopher I.; Bernstein, Jonine L.; Claus, Elizabeth B.; Houlston, Richard S.; Il'yasova, Dora; Jenkins, Robert B.; Johansen, Christoffer; Lachance, Daniel H.; Lai, Rose K.; Merrell, Ryan T.; Olson, Sara H.; Sadetzki, Siegal; Schildkraut, Joellen M.; Shete, Sanjay; Andersson, Ulrika; Rajaraman, Preetha; Chanock,Stephen; Linet, Martha S.; Wang, Zhaoming; Yeager, Meredith; Melin, Beatrice; Bondy, Melissa L.; Barnholtz-Sloan, Jill S.; Freeman, Laura E. Beane; Koutros, Stella; Albanes, Demetrius; Visvanathan, Kala; Stevens, Victoria L.; Henriksson, Roger; Michaud, Dominique S.; Feychting, Maria; Ahlbom, Anders; Giles, Graham G.; Giles, Graham G.; Milne, Roger; McKean-Cowdin, Roberta; Le Marchand, Loic; Stampfer, Meir; Ruder, Avima M.; Carreon, Tania; Hallmans, Goran; Zeleniuch-Jacquotte, Anne; Gaziano, J. Michael; Sesso, Howard D.; Purdue, Mark P.; White, Emily; Peters, Ulrike; Buring, Julie
  3. NEURO-ONCOLOGY. 2019, JAN; 21(1): 71-82.
  1. 18.   Calmodulin (CaM) Activates PI3K alpha by Targeting the "Soft" CaM-Binding Motifs in Both the nSH2 and cSH2 Domains of p85 alpha
  2. Zhang,Mingzhen; Li, Zhigang; Wang, Guanqiao; Jang,Hyunbum; Sacks, David B.; Zhang, Jian; Gaponenko, Vadim; Nussinov,Ruth
  3. JOURNAL OF PHYSICAL CHEMISTRY B. 2018, Dec 13; 122(49): 11137-11146.
  1. 19.   Arl2-Mediated Allosteric Release of Farnesylated KRas4B from Shuttling Factor PDE delta
  2. Ozdemir, E. Sila; Jang, Hyunbum; Gursoy, Attila; Keskin, Ozlem; Nussinov, Ruth
  3. JOURNAL OF PHYSICAL CHEMISTRY B. 2018, Aug 2; 122(30): 7503-7513.
  1. 20.   Quantification of regional aerosol deposition patterns as a function of aerodynamic particle size in rhesus macaques using PET/CT imaging
  2. Dabisch, P A; Xu, Z; Boydston, J A; Solomon, Jeffrey; Bohannon, J K; Yeager, J J; Taylor, J R; Reeder, R J; Sayre, P; Seidel, J; Mollura, D J; Hevey, M C; Jahrling, P B; Lackemeyer, M G
  3. Inhalation toxicology. 2017, Dec 11; 29(11): 506-515.
  1. 21.   Flexible-Body Motions of Calmodulin and the Farnesylated Hypervariable Region Yield a High-Affinity Interaction Enabling K-Ras4B Membrane Extraction.
  2. Jang, Hyunbum; Banerjee, Avik; Chavan, Tanmay; Gaponenko, Vadim; Nussinov, Ruth
  3. The Journal of biological chemistry. 2017, Jul 28; 292(30): 12544-12559.
  1. 22.   Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue
  2. Shi, J.; Marconett, C. N.; Duan, J.; Hyl, P. L.; Li, P.; Wang, Z.; Wheeler, W.; Zhou, B.; Campan, M.; Lee, D. S.; Huang, J.; Zhou, W.; Triche, T.; Amundadottir, L.; Warner, A.; Hutchinson, A.; Chen, P. H.; Chung, B. S.; Pesatori, A. C.; Consonni, D.; Bertazzi, P. A.; Bergen, A. W.; Freedman, M.; Siegmund, K. D.; Berman, B. P.; Borok, Z.; Chatterjee, N.; Tucker, M. A.; Caporaso, N. E.; Chanock, S. J.; Laird-Offringa, I. A.; Landi, M. T.
  3. Nature Communications. 2014, 27-Feb; 5: 3365.
  1. 23.   Taxonomic revision of the genus Galictis (Carnivora: Mustelidae): species delimitation, morphological diagnosis, and refined mapping of geographical distribution
  2. Bornholdt, R.; Helgen, K.; Koepfli, K. P.; Oliveira, L.; Lucherini, M.; Eizirik, E.
  3. Zoological Journal of the Linnean Society. 2013, Mar; 167(3): 449-472.
  1. 24.   Attenuation of Neurovirulence, Biodistribution, and Shedding of a Poliovirus:Rhinovirus Chimera after Intrathalamic Inoculation in Macaca fascicularis
  2. Dobrikova, E. Y.; Goetz, C.; Walters, R. W.; Lawson, S. K.; Peggins, J. O.; Muszynski, K.; Ruppel, S.; Poole, K.; Giardina, S. L.; Vela, E. M.; Estep, J. E.; Gromeier, M.
  3. Journal of Virology. 2012, Mar; 86(5): 2750-2759.
  1. 25.   An unusual feature associated with LEE1 P1 promoters in enteropathogenic Escherichia coli (EPEC)
  2. Jeong, J. H.; Kim, H. J.; Kim, K. H.; Shin, M.; Hong, Y.; Rhee, J. H.; Schneider, T. D.; Choy, H. E.
  3. Molecular Microbiology. 2012, Feb; 83(3): 612-622.
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