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  1. 1.   Prior SARS-Cov-2 infection affects adaptive immune responses to Omicron BA.4/BA.5 mRNA booster
  2. Wachter, Brianna T; Xu, Qin; Shi, Lihong; Burbelo, Peter D; Myint-Hpu, Kathy; Schwartzberg, Pamela L; Rehman,Tauseef; Dewar,Robin; Boswell, Kristin L; Koup, Richard A; Oguz, Cihan; Imberti, Luisa; Bellusci, Lorenza; Pourhashemi, Sara; Khurana, Surender; Manthiram, Kalpana; Notarangelo, Luigi D; Delmonte, Ottavia M
  3. The journal of Allergy and Clinical Immunology. . 2025, Mar 03;
  1. 2.   Early influenza virus exposure shapes the B cell response to influenza vaccination in individuals 50 years later
  2. Spangler, Abby; Shimberg, Geoffrey D; Mantus, Grace E; Malek, Rory; Cominsky, Lauren Y; Tsybovsky,Yaroslav; Li,Ning; Gillespie, Rebecca A; Ravichandran, Michelle; Creanga, Adrian; Raab, Julie E; Gajjala, Suprabhath R; Mendoza, Floreliz; Houser, Katherine V; Dropulic, Lesia; McDermott, Adrian B; Kanekiyo, Masaru; Andrews, Sarah F
  3. Immunity. 2025, Feb 25;
  1. 3.   Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs
  2. Weingarten-Gabbay, Shira; Klaeger, Susan; Sarkizova, Siranush; Pearlman, Leah R.; Chen, Da-Yuan; Gallagher, Kathleen M. E.; Bauer, Matthew R.; Taylor, Hannah B.; Dunn, W. Augustine; Tarr, Christina; Sidney, John; Rachimi, Suzanna; Conway, Hasahn L.; Katsis, Katelin; Wang, Yuntong; Leistritz-Edwards, Del; Durkin, Melissa R.; Tomkins-Tinch, Christopher H.; Finkel, Yaara; Nachshon, Aharon; Gentili, Matteo; Rivera, Keith D.; Carulli, Isabel P.; Chea, Vipheaviny A.; Chandrashekar, Abishek; Bozkus, Cansu Cimen; Carrington,Mary; Bhardwaj, Nina; Barouch, Dan H.; Sette, Alessandro; Maus, Marcela; Rice, Charles M.; Clauser, Karl R.; Keskin, Derin B.; Pregibon, Daniel C.; Hacohen, Nir; Carr, Steven A.; Abelin, Jennifer G.; Saeed, Mohsan; Sabeti, Pardis C.
  3. CELL. 2021, Jul 22; 184(15): 3962-3980.e17.
  1. 4.   Learning from HIV-1 to predict the immunogenicity of T cell epitopes in SARS-CoV-2
  2. Gao, Ang; Chen, Zhilin; Amitai, Assaf; Doelger, Julia; Mallajosyula, Vamsee; Sundquist, Emily; Segal, Florencia Pereyra; Carrington,Mary; Davis, Mark M.; Streeck, Hendrik; Chakraborty, Arup K.; Julg, Boris
  3. iScience. 2021, Apr 23; 24(4):
  1. 5.   HLA tapasin independence: broader peptide repertoire and HIV control
  2. Bashirova,Arman; Viard,Mathias; Naranbhai, Vivek; Grifoni, Alba; Garcia-Beltran, Wilfredo; Akdag,Marjan; Yuki,Yuko; Gao,Xiaojiang; O'hUigin, Colm; Raghavan, Malini; Wolinsky, Steven; Bream, Jay H; Duggal, Priya; Martinson, Jeremy; Michael, Nelson L; Kirk, Gregory D; Buchbinder, Susan P; Haas, David; Goedert, James J; Deeks, Steven G; Fellay, Jacques; Walker, Bruce; Goulder, Philip; Cresswell, Peter; Elliott, Tim; Sette, Alessandro; Carlson, Jonathan; Carrington,Mary
  3. Proceedings of the National Academy of Sciences of the United States of America. 2020, NOV 10; 117(45): 28232-28238.
  1. 6.   Impacts of combining anti-PD-L1 immunotherapy and radiotherapy on the tumour immune microenvironment in a murine prostate cancer model
  2. Philippou, Yiannis; Sjoberg, Hanna T.; Murphy, Emma; Alyacoubi, Said; Jones, Keaton I.; Gordon-Weeks, Alex N.; Phyu, Su; Parkes, Eileen E.; Gillies McKenna, W.; Lamb, Alastair D.; Gileadi, Uzi; Cerundolo, Vincenzo; Scheiblin,David; Lockett,Stephen; Wink,David; Mills, Ian G.; Hamdy, Freddie C.; Muschel, Ruth J.; Bryant, Richard J.
  3. BRITISH JOURNAL OF CANCER. 2020, JUL 9;
  1. 7.   Longitudinal Analysis of the Human B Cell Response to Ebola Virus Infection
  2. Davis, Carl W; Jackson, Katherine J L; McElroy, Anita K; Halfmann, Peter; Huang, Jessica; Chennareddy, Chakravarthy; Piper, Ashley E; Leung, Yvonne; Albariño, César G; Crozier,Ian; Ellebedy, Ali H; Sidney, John; Sette, Alessandro; Yu, Tianwei; Nielsen, Sandra C A; Goff, Arthur J; Spiropoulou, Christina F; Saphire, Erica Ollman; Cavet, Guy; Kawaoka, Yoshihiro; Mehta, Aneesh K; Glass, Pamela J; Boyd, Scott D; Ahmed, Rafi
  3. Cell. 2019, MAY 30; 177(6): 1566-1582.e17.
  1. 8.   Prolonged evolution of the memory B cell response induced by a replicating adenovirus-influenza H5 vaccine
  2. Matsuda, Kenta; Huang, Jinghe; Zhou, Tongqing; Sheng, Zizhang; Kang, Byong H.; Ishida, Elise; Griesman, Trevor; Stuccio, Sarah; Bolkhovitinov, Lyuba; Wohlbold, Teddy J.; Chromikova, Veronika; Cagigi, Alberto; Leung, Kwanyee; Andrews, Sarah; Cheung, Crystal S. F.; Pullano, Alyssa A.; Plyler, Jason; Soto, Cinque; Zhang, Baoshan; Yang, Yongping; Joyce, M. Gordon; Tsybovsky,Yaroslav; Wheatley, Adam; Narpala, Sandeep R.; Guo, Yicheng; Darko, Sam; Bailer, Robert T.; Poole, April; Liang, C. Jason; Smith, Jon; Alexander, Jeff; Gurwith, Marc; Migueles, Stephen A.; Koup, Richard A.; Golding, Hana; Khurana, Surender; McDermott, Adrian B.; Shapiro, Lawrence; Krammer, Florian; Kwong, Peter D.; Connors, Mark
  3. SCIENCE IMMUNOLOGY. 2019, Apr 19; 4(34):
  1. 9.   Copy Number Variation of KIR Genes Influences HIV-1 Control
  2. Pelak, K.; Need, A. C.; Fellay, J.; Shianna, K. V.; Feng, S.; Urban, T. J.; Ge, D. L.; De Luca, A.; Martinez-Picado, J.; Wolinsky, S. M.; Martinson, J. J.; Jamieson, B. D.; Bream, J. H.; Martin, M. P.; Borrow, P.; Letvin, N. L.; McMichael, A. J.; Haynes, B. F.; Telenti, A.; Carrington, M.; Goldstein, D. B.; Alter, G.; Vaccine, N. C. H. A.
  3. Plos Biology. 2011, Nov; 9(11):
  1. 10.   Putative rhesus macaque germline predecessors of human broadly HIV-neutralizing antibodies: Differences from the human counterparts and implications for HIV-1 vaccine development
  2. Yuan, T. T.; Li, J. J.; Zhang, Y.; Wang, Y. P.; Streaker, E.; Dimitrov, D. S.; Zhang, M. Y.
  3. Vaccine. 2011, Sep; 29(40): 6903-6910.
  1. 11.   Mouse Ly49G2(+) NK cells dominate early responses during both immune reconstitution and activation independently of MHC
  2. Barao, I.; Alvarez, M.; Ames, E.; Orr, M. T.; Stefanski, H. E.; Blazar, B. R.; Lanier, L. L.; Anderson, S. K.; Redelman, D.; Murphy, W. J.
  3. Blood. 2011, Jun; 117(26): 7032-7041.
  1. 12.   CD4 and CD8 T Cell Immune Activation during Chronic HIV Infection: Roles of Homeostasis, HIV, Type I IFN, and IL-7
  2. Catalfamo, M.; Wilhelm, C.; Tcheung, L.; Proschan, M.; Friesen, T.; Park, J. H.; Adelsberger, J.; Baseler, M.; Maldarelli, F.; Davey, R.; Roby, G.; Rehm, C.; Lane, C.
  3. Journal of Immunology. 2011, Feb; 186(4): 2106-2116.
  1. 13.   A large human domain antibody library combining heavy and light chain CDR3 diversity
  2. Chen, W. Z.; Zhu, Z. Y.; Feng, Y.; Dimitrov, D. S.
  3. Molecular Immunology. 2010, Jan; 47(4): 912-921.
  1. 14.   Genetic Control of Variegated KIR Gene Expression: Polymorphisms of the Bi-Directional KIR3DL1 Promoter Are Associated with Distinct Frequencies of Gene Expression
  2. Li, H. C.; Pascal, V.; Martin, M. P.; Carrington, M.; Anderson, S. K.
  3. Plos Genetics. 2008 4(11):
  1. 15.   NF-kappa B p50/p65 affects the frequency of Ly49 gene expression by NK Cells
  2. Pascal, V.; Nathan, N. R.; Claudio, E.; Siebenlist, U.; Anderson, S. K.
  3. Journal of Immunology. 2007, Aug; 179(3): 1751-1759.
  1. 16.   Identification of bidirectional promoters in the human KIR genes
  2. Davies, G. E.; Locke, S. M.; Wright, P. W.; Li, H.; Hanson, R. J.; Miller, J. S.; Anderson, S. K.
  3. Genes and Immunity. 2007, Apr; 8(3): 245-253.
  1. 17.   The ARTS web server for aligning RNA tertiary structures
  2. Dror, O.; Nussinov, R.; Wolfson, H. J.
  3. Nucleic Acids Research. 2006, Jul; 34: W412-W415.
  1. 18.   ARTS: alignment of RNA tertiary structures
  2. Dror, O.; Nussinov, R.; Wolfson, H.
  3. Bioinformatics. 2005, SEP; 21(Suppl. 2): 47-53.
  1. 19.   Autoantigens act as tissue-specific chemoattractants
  2. Oppenheim, J. J.; Dong, H. F.; Plotz, P.; Caspi, R. R.; Dykstra, M.; Pierce, S.; Martin, R.; Carlos, C.; Finn, O.; Koul, O.; Howard, O. M. Z.
  3. Journal of Leukocyte Biology. 2005, JUN; 77(6): 854-861.
  1. 20.   NFkB affects Natural Killer cell development by regulating the Ly49 repertoire
  2. Pascal, V.; Abshari, M.; Anderson, S. K.
  3. Faseb Journal. 2005, MAR 4; 19(4, Part 1 Suppl. S): A918-A918.
  1. 21.   Direct sequence comparison of two divergent class I MHC natural killer cell receptor haplotypes
  2. Makrigiannis, A. P.; Patel, D.; Goulet, M. L.; Dewar, K.; Anderson, S. K.
  3. Genes and Immunity. 2005, MAR; 6(2): 71-83.
  1. 22.   Heterodimer formation between c-Jun and Jun B proteins mediated by Epstein Barr virus encoded latent membrane protein 1
  2. Song, X.; Tao, Y. G.; Tan, Y. N.; Lee, L. M.; Deng, X. Y.; Wu, Q.; Cao, Y.
  3. Science in China Series C-Life Sciences. 2005, FEB; 48(1): 70-80.
  1. 23.   Mouse Ly49 NK receptors: balancing activation and inhibition
  2. Ortaldo, J. R.; Young, H. A.
  3. Molecular Immunology. 2005, FEB; 42(4): 445-450.
  1. 24.   Combinations of maternal KIR and fetal HLA-C genes influence the risk of preeclampsia and reproductive success
  2. Hiby, S. E.; Walker, J. J.; O'Shaughnessy, K. M.; Redman, C. W. G.; Carrington, M.; Trowsdale, J.; Moffett, A.
  3. Journal of Experimental Medicine. 2004, OCT 18; 200(8): 957-965.
  1. 25.   Independent control of Ly49g alleles: Implications for NK cell repertoire selection and tumor cell killing
  2. Makrigiannis, A. P.; Rousselle, E.; Anderson, S. K.
  3. Journal of Immunology. 2004 172(3): 1414-1425.
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