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  1. 1.   MYC assembles and stimulates topoisomerases 1 and 2 in a "topoisome"
  2. Das, Subhendu K.; Kuzin, Vladislav; Cameron, Donald P.; Sanford, Suzanne; Jha, Rajiv Kumar; Nie, Zuqin; Rosello, Marta Trullols; Holewinski,Ronald; Andresson,Thorkell; Wisniewski, Jan; Natsume, Toyoaki; Price, David H.; Lewis, Brian A.; Kouzine, Fedor; Levens, David; Baranello, Laura
  3. Molecular Cell. 2022, Jan 6; 82(1): 140-158. e12.
  1. 2.   Iterative epigenomic analyses in the same single cell
  2. Ohnuki, Hidetaka; Venzon, David J.; Lobanov,Alexei; Tosato, Giovanna
  3. Genome Research. 2021, Oct; 31(11): 1819-1830.
  1. 3.   The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences
  2. Newman, Jane D.; Russell, Meghan M.; Fan,Lixin; Wang,Yun-Xing; Gonzalez-Gutierrez, Giovanni; van Kessel, Julia C.
  3. Nucleic acids research. 2021, Jun 4; 49(10): 5967-5984.
  1. 4.   An unusual feature associated with LEE1 P1 promoters in enteropathogenic Escherichia coli (EPEC)
  2. Jeong, J. H.; Kim, H. J.; Kim, K. H.; Shin, M.; Hong, Y.; Rhee, J. H.; Schneider, T. D.; Choy, H. E.
  3. Molecular Microbiology. 2012, Feb; 83(3): 612-622.
  1. 5.   Treatment of breast cancer cells with DNA demethylating agents leads to a release of Pol II stalling at genes with DNA-hypermethylated regions upstream of TSS
  2. Tao, Y. G.; Liu, S.; Briones, V.; Geiman, T. M.; Muegge, K.
  3. Nucleic Acids Research. 2011, Dec; 39(22): 9508-9520.
  1. 6.   Antitumor Activity of a Novel Oncrasin Analogue Is Mediated by JNK Activation and STAT3 Inhibition
  2. Guo, W.; Wu, S. H.; Wang, L.; Wei, X. L.; Liu, X. Y.; Wang, J.; Lu, Z. M.; Hollingshead, M.; Fang, B. L.
  3. Plos One. 2011, Dec; 6(12):
  1. 7.   Gene-specific transcription activation via long-range allosteric shape-shifting
  2. Tsai, C. J.; Nussinov, R.
  3. Biochemical Journal. 2011, Oct; 439: 15-25.
  1. 8.   Ontogeny-Driven rDNA Rearrangement, Methylation, and Transcription, and Paternal Influence
  2. Shiao, Y. H.; Leighty, R. M.; Wang, C. J.; Ge, X.; Crawford, E. B.; Spurrier, J. M.; McCann, S. D.; Fields, J. R.; Fornwald, L.; Riffle, L.; Driver, C.; Quinones, O. A.; Wilson, R. E.; Kasprzak, K. S.; Travlos, G. S.; Alvord, W. G.; Anderson, L. M.
  3. Plos One. 2011, Jul; 6(7): 10.
  1. 9.   Nature, Position, and Frequency of Mutations Made in a Single Cycle of HIV-1 Replication
  2. Abram, M. E.; Ferris, A. L.; Shao, W.; Alvord, W. G.; Hughes, S. H.
  3. Journal of Virology. 2010, Oct; 84(19): 9864-9878.
  1. 10.   Epigenetic Analysis of KSHV Latent and Lytic Genomes
  2. Toth, Z.; Maglinte, D. T.; Lee, S. H.; Lee, H. R.; Wong, L. Y.; Brulois, K. F.; Lee, S.; Buckley, J. D.; Laird, P. W.; Marquez, V. E.; Jung, J. U.
  3. Plos Pathogens. 2010, Jul; 6(7): 17.
  1. 11.   Exon Array Analyses across the NCI-60 Reveal Potential Regulation of TOP1 by Transcription Pausing at Guanosine Quartets in the First Intron
  2. Reinhold, W. C.; Mergny, J. L.; Liu, H. F.; Ryan, M.; Pfister, T. D.; Kinders, R.; Parchment, R.; Doroshow, J.; Weinstein, J. N.; Pommier, Y.
  3. Cancer Research. 2010, Mar; 70(6): 2191-2203.
  1. 12.   Euprosterna elaeasa virus genome sequence and evolution of the Tetraviridae family: Emergence of bipartite genomes and conservation of the VPg signal with the dsRNA Birnaviridae family
  2. Zeddam, J. L.; Gordon, K. H. J.; Lauber, C.; Alves, C. A. F.; Luke, B. T.; Hanzlik, T. N.; Ward, V. K.; Gorbalenya, A. E.
  3. Virology. 2010, Feb; 397(1): 145-154.
  1. 13.   Sequences required for transcription termination at the intrinsic lambda tI terminator
  2. Martinez-Trujillo, M.; Sanchez-Trujillo, A.; Ceja, V.; Avila-Moreno, F.; Bermudez-Cruz, R. M.; Court, D.; Montanez, C.
  3. Canadian Journal of Microbiology. 2010, Feb; 56(2): 168-177.
  1. 14.   Mammalian cell-cycle regulation: several Cdks, numerous cyclins and diverse compensatory mechanisms
  2. Satyanarayana, A.; Kaldis, P.
  3. Oncogene. 2009 28(33): 2925-2939.
  1. 15.   Rpb9 Subunit Controls Transcription Fidelity by Delaying NTP Sequestration in RNA Polymerase II
  2. Walmacq, C.; Kireeva, M. L.; Irvin, J.; Nedialkov, Y.; Lubkowska, L.; Malagon, F.; Strathern, J. N.; Kashlev, M.
  3. Journal of Biological Chemistry. 2009 284(29): 19601-19612.
  1. 16.   Global transcription in pluripotent embryonic stem cells
  2. Efroni, S.; Duttagupta, R.; Cheng, J.; Dehghani, H.; Hoeppner, D. J.; Dash, C.; Bazett-Jones, D. P.; Le Grice, S.; Mckay, R.; Buetow, K. H.; Gingeras, T. R.; Misteli, T.; Meshorer, E.
  3. Cell Stem Cell. 2008 2(5): 437-447.
  1. 17.   Rtf1-mediated eukaryotic site-specific replication termination
  2. Eydmann, T.; Sommariva, E.; Inagawa, T.; Mian, S.; Klar, A.; Dalgaard, J. Z.
  3. Genetics. 2008 180(1): 27-39.
  1. 18.   DNA sequences in gal operon override transcription elongation blocks
  2. Lewis, D.; Komissarova, N.; Le, P.; Kashlev, M.; Adhya, S.
  3. Journal of Molecular Biology. 2008 382(4): 843-858.
  1. 19.   DNA bubble formation in transcription initiation
  2. Tchernaenko, V.; Halvorson, H. R.; Kashlev, M.; Lutter, L. C.
  3. Biochemistry. 2008 47(7): 1871-1884.
  1. 20.   DNA bending in transcription initiation
  2. Tchernaenko, V.; Radlinska, M.; Lubkowska, L.; Halvorson, H. R.; Kashlev, M.; Lutter, L. C.
  3. Biochemistry. 2008 47(7): 1885-1895.
  1. 21.   Regulation of Cell Growth during Serum Starvation and Bacterial Survival in Macrophages by the Bifunctional Enzyme SpoT in Helicobacter pylori
  2. Zhou, Y. N.; Coleman, W. G.; Yang, Z. X.; Yang, Y.; Hodgson, N.; Chen, F.; Jin, D. J.
  3. Journal of Bacteriology. 2008 190(24): 8025-8032.
  1. 22.   UVC inhibits HIF-1 alpha protein translation by a DNA damage- and topoisomerase I-independent pathway
  2. Rapisarda, A.; Melillo, G.
  3. Oncogene. 2007, Oct; 26(48): 6875-6884.
  1. 23.   Anatomy of Escherichia coli sigma(70) promoters
  2. Shultzaberger, R. K.; Chen, Z. H.; Lewis, Janine; Schneider, Tom
  3. Nucleic Acids Research. 2007, Feb; 35(3): 771-788.
  1. 24.   A new look at bacteriophage lambda genetic networks
  2. Court, D. L.; Oppertheim, A. B.; Adhya, S. L.
  3. Journal of Bacteriology. 2007, Jan; 189(2): 298-304.
  1. 25.   Development of therapeutics for chronic HCV infection
  2. Huang, Z.; Murray, M. G.; Secrist, J. A.
  3. Antiviral Research. 2006, Sep; 71(2-3): 351-362.
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