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  1. 1.   Probabilistic single-particle cryo-EM ab initio 3D reconstruction in SIMPLE
  2. Van, Cong T S; Reboul, Cyril F; Caesar, Joseph J E; Meana-Pañeda, Rubén; Lountos,George; Deme, Justin C; Bryant, Owain J; Johnson, Steven; Piczak, Claire T; Valkov, Eugene; Lea, Susan M; Elmlund, Hans
  3. Acta Crystallographica. Section D, Structural biology. 2025, Aug 01;
  1. 2.   FMRP drives mRNP targets into translationally silenced complexes
  2. Kurosaki, Tatsuaki; Cho, Hana; Abshire, Elizabeth T; Pröschel, Christoph; Mitsutomi, Shuhei; Sato, Hanae; Simko, Eric A J; Fraser, Christopher S; Sakano, Hitomi; Maquat, Lynne E
  3. Molecular Cell. 2025, Jul 08;
  1. 3.   Retention outcomes during same-day antiretroviral therapy initiation in health facilities and outreach settings of Rakai, Uganda, 2016-2021
  2. Basiima, Jesca; Ssempijja,Victor; Ndyanabo, Anthony; Bua, Grace Mong; Bbaale, Denis; Chang, Larry W; Serwadda, David; Kagaayi, Joseph; Fitzmaurice, Arthur G; Grabowski, Kate; Nalugoda, Fred; Kigozi, Godfrey; Gray, Ronald; Wawer, Maria; Nakigozi, Gertrude; Reynolds, Steven J
  3. HIV Medicine. 2025, Jul 04;
  1. 4.   Prolonged antiretroviral therapy use and hypertension in a retrospective cross-sectional study-Rakai, Uganda
  2. Mongo Bua, Grace; Ssempijja,Victor; Ndyanabo, Anthony; Nabukalu, Dorean; Basiima, Jesca; Kankaka, Edward Nelson; Nalugoda, Fred; Nakigozi, Gertrude; Kagaayi, Joseph; Chang, Larry W; Post, Wendy S; Quinn, Thomas C; Gray, Ron; Wawer, Maria; Kigozi, Godfrey; Reynolds, Steven J
  3. BMC Infectious Diseases. 2025, Jul 01; 25(1): 860.
  1. 5.   The oral microbiome and all-cause mortality in aUS population representative prospective cohort
  2. Vogtmann, Emily; Yano, Yukiko; Shi, Jianxin; Wan,Yunhu; Purandare, Vaishnavi; McLean, Jody; Li, Shilan; Knight, Rob; Kahle, Lisa; Hullings, Autumn G; Hua,Xing; Graubard, Barry I; Gillison, Maura L; Caporaso, J Gregory; Bokulich, Nicholas A; Blaser, Martin J; Freedman, Neal D; Chaturvedi, Anil K; Abnet, Christian C
  3. The Journal of Infectious Diseases. 2025, Jun 13;
  1. 6.   Monotherapy with antibody 1C3 partially protects Ebola virus-exposed macaques
  2. Worwa, Gabriella; Davis, Carl W; Klim, Sarah E; Turcinovic, Jacquelyn; Agans, Krystle N; Borisevich, Viktoriya; Geisbert, Joan B; Cross, Robert W; Crane, Anya; Holbrook, Michael R; Sanchez-Lockhart, Mariano; Kugelman, Jeffrey R; Patino Galindo, Juan A; Geisbert, Thomas W; Ahmed, Rafi; Kuhn, Jens H; Ollmann Saphire, Erica; Palacios, Gustavo; Crozier,Ian
  3. Journal of Virology. 2025, Jun 10; e0029625.
  1. 7.   Futility Monitoring in Clinical Trials
  2. Ortega-Villa, Ana M; Grieco, Megan C; Rubenstein,Kevin; Wang,Jing; Proschan, Michael A
  3. Statistics in Medicine. 2025, Jun; 44(13-14): e70157.
  1. 8.   Incidence and risk factors for tuberculosis at a rural HIV clinic in Uganda, 2012-2019; A retrospective cohort study
  2. Sendagire, Ibrahim; Ssempijja,Victor; Ndyanabo, Anthony; Ssettuba, Absalom; Mawanda, Annie N; Nakigozi, Gertrude; Lukoye, Deus; Fitzmaurice, Arthur G; Muhindo, Richard; Zawedde-Muyanja, Stella; Reynolds, Steven J
  3. BMC Public Health. 2025, May 22; 25(1): 1882.
  1. 9.   Clinicopathologic Features, Management, and Outcomes Of Pediatric CRTC1::TRIM11 and MED15::ATF1 Tumors With Spitzoid Morphology: A Case Series
  2. Sargen, Michael R; Fitzhugh, Madeline H; Ko, Jennifer S; Close, Allison G; Horton, Sara C; Malik, Faizan; Furtado, Larissa V; Bahrami, Armita; Seynnaeve, Brittani K N; Pappo, Alberto S; Liu, Vincent; Cheung, Kevin; Pack, Svetlana D; Xi, Liqiang; Raffeld, Mark; Lee, Ina; Gagan, Jeffrey; Aldape, Kenneth; Barr, Frederic G; Hewitt, Stephen M; Ferrone, Christina K; Hayden, Anna; Hatton, Jessica N; Goldstein, Alisa M; Pfeiffer, Ruth M; Widemann, Brigitte; Malone, Mary Frances Wedekind; Gross, Andrea M; Kaplan, Rosandra; Yohe,Marielle; Berrebi, Kristen G
  3. Pediatric Blood & Cancer. 2025, May 19; e31814.
  1. 10.   Molecular and genetic characterization of sex-linked orange coat color in the domestic cat
  2. Kaelin, Christopher B; McGowan, Kelly A; Trotman, Joshaya C; Koroma, Donald C; David, Victor A; Menotti-Raymond, Marilyn; Graff, Emily C; Schmidt-Küntzel, Anne; Oancea, Elena; Barsh, Gregory S
  3. Current Biology : CB. 2025, May 12;
  1. 11.   How to recover from a bad start: adaptation of HIV-1 transcription start site mutants during serial passaging in culture
  2. Nikolaitchik,Olga; Chameettachal,Akhil; Islam,Mohammad Saiful; Keele,Brandon; Delviks-Frankenberry, Krista; Pathak,Vinay; Hu,Wei-Shau; Cheng,Zetao
  3. Journal of Virology. 2025, May 07; e0015925.
  1. 12.   Machine learning-augmented molecular dynamics simulations (MD) reveal insights into the disconnect between affinity and activation of ZTP riboswitch ligands
  2. Fullenkamp, Christopher; Mehdi, Shams; Jones, Christopher; Tenney, Logan; Pichling, Patricio; Prestwood, Peri R; Ferré-D'Amaré, Adrian R; Tiwary, Pratyush; Schneekloth,John
  3. Angewandte Chemie (International ed. in English). 2025, May 01; e202505971.
  1. 13.   Development of patient reported outcome measures assessing tumor pain intensity and tumor pain interference for individuals with neurofibromatosis type 1 and plexiform neurofibromas: qualitative findings
  2. Al Ghriwati, Nour; Struemph, Kari; Martin, Staci; Little, Paige; Baker, Melissa; Levine, Jason; MacKenzie, Cynthia; Tonsgard, James; Schorry, Elizabeth K; Walsh, Karin S; Wolters, Pamela L
  3. Journal of Patient-Reported Outcomes. 2025, Apr 30; 9(1): 46.
  1. 14.   A monomeric envelope glycoprotein cytoplasmic tail is sufficient for HIV-1 Gag lattice trapping and incorporation
  2. Groves, Nicholas S; Clark, Austin R; Aguilar, Rebekah S; Hikichi,Yuta; Kostenko, Anastasiia; Bruns, Merissa M; Aron, Alegra T; Freed,Eric; van Engelenburg, Schuyler B
  3. Journal of virology. 2025, Apr 15; e0210524.
  1. 15.   Nanoparticles may influence mast cells gene expression profiles without affecting their degranulation function
  2. Newton,Hannah; Cedrone,Edward; Grunberger, Jason; Xie,Shaojun; Zhao,Yongmei; Tran,Bao; Toms, Bradley; Xu, Weining; Plant-Hately, Alexander; Liptrott, Neill J; Dobrovolskaia,Marina
  3. Nanomedicine : nanotechnology, biology, and medicine. 2025, Apr 02; 102818.
  1. 16.   The human oral microbiome and risk of colorectal cancer within three prospective cohort studies in the United States
  2. Vogtmann, Emily; Yano, Yukiko; Zouiouich, Semi; Hua,Xing; Wan, Yunhu; Purandare, Vaishnavi; Li, Shilan; Dagnall,Casey; Jones, Kristine; Hicks,Belynda; Hutchinson,Amy; Caporaso, J Gregory; Wheeler, William; Huang, Wen-Yi; Freedman, Neal D; Sandler, Dale P; Beane Freeman, Laura E; Liao, Linda M; Gail, Mitchell H; Shi, Jianxin; Abnet, Christian C; Sinha, Rashmi
  3. Cancer. 2025, Mar 15; 131(6): e35802.
  1. 17.   Data imbalance in drug response prediction: multi-objective optimization approach in deep learning setting
  2. Narykov, Oleksandr; Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Partin, Alexander; Xia, Fangfang; Shukla, Maulik; Vasanthakumari, Priyanka; Doroshow, James H; Stevens, Rick L
  3. Briefings in Bioinformatics. 2025, Mar 04; 26(2):
  1. 18.   Prior SARS-Cov-2 infection affects adaptive immune responses to Omicron BA.4/BA.5 mRNA booster
  2. Wachter, Brianna T; Xu, Qin; Shi, Lihong; Burbelo, Peter D; Myint-Hpu, Kathy; Schwartzberg, Pamela L; Rehman,Tauseef; Dewar,Robin; Boswell, Kristin L; Koup, Richard A; Oguz, Cihan; Imberti, Luisa; Bellusci, Lorenza; Pourhashemi, Sara; Khurana, Surender; Manthiram, Kalpana; Notarangelo, Luigi D; Delmonte, Ottavia M
  3. The journal of Allergy and Clinical Immunology. . 2025, Mar 03;
  1. 19.   A robust fluorogenic substrate for chikungunya virus protease (nsP2) activity
  2. Makhaik, Sparsh; Rut, Wioletta; Choudhary, Shruti; Upadhyay, Tulsi; Hao, Chenzhou; Westberg, Michael; Bobst, Cedric; Yoo,Euna; Fejzo, Jasna; Lin, Michael Z; Bogyo, Matthew; Thompson, Paul; Drag, Marcin; Hardy, Jeanne A
  3. Protein Science : a publication of the Protein Society. 2025, Mar; 34(3): e70069.
  1. 20.   Early influenza virus exposure shapes the B cell response to influenza vaccination in individuals 50 years later
  2. Spangler, Abby; Shimberg, Geoffrey D; Mantus, Grace E; Malek, Rory; Cominsky, Lauren Y; Tsybovsky,Yaroslav; Li,Ning; Gillespie, Rebecca A; Ravichandran, Michelle; Creanga, Adrian; Raab, Julie E; Gajjala, Suprabhath R; Mendoza, Floreliz; Houser, Katherine V; Dropulic, Lesia; McDermott, Adrian B; Kanekiyo, Masaru; Andrews, Sarah F
  3. Immunity. 2025, Feb 25;
  1. 21.   TRa1 mutant suppresses KLF9 to cause endometrial metaplasia with ectopic IL-33 expression leading to uterine fibrosis and infertility
  2. Edmondson,Elijah; Kimura, Takahito; Hwang, Eunmi; Kim, Minjun; Warner,Andrew; Zhu, Yuelin; Zhao, Li; Yu, Yanlin; Zhu, Xuguang; Hernandez, Maria; Kedei, Noemi; Cheng, Sheue-Yann
  3. Scientific Reports. 2025, Jan 31; 15(1): 3892.
  1. 22.   Use of mobile phones to collect data on COVID-19: phone access and participation rates, in Rakai, Uganda
  2. Ssekubugu, Robert; Ndyanabo, Anthony; Makumbi, Fredrick; Ekström, Anna Mia; Beres, Laura; Nalwoga Kigozi, Grace; Nakawooya, Hadijja; Ssekasanvu, Joseph; Wawer, Maria J; Nalugoda, Fred; Sewankambo, Nelson; Ssempijja,Victor; Nantume, Betty; Serwadda, David; Kigozi, Godfrey; Gray, Ronald H; Chang, Larry W; Grabowski, M Kate; Nordenstedt, Helena; Kagaayi, Joseph
  3. Global Health Action. 2024, Dec 31; 17(1): 2419160.
  1. 23.   SNARE mimicry by the CD225 domain of IFITM3 enables regulation of homotypic late endosome fusion
  2. Rahman, Kazi; Wilt,Isaiah; Jolley, Abigail A; Chowdhury,Bhabadeb; Datta, Siddhartha A K; Compton,Alex
  3. The EMBO Journal. 2024, Dec 09;
  1. 24.   Aberrant Wnt/ß-catenin signaling in the mesenchymal stem cells of LZTFL1-depleted mice leads to increased adipogenesis, with implications for obesity
  2. Badralmaa,Yunden; Natarajan,Ven
  3. The Journal of Biological Chemistry. 2024, Dec 09; 108057.
  1. 25.   Association of changes in expression of HDAC and SIRT genes after drug treatment with cancer cell line sensitivity to kinase inhibitors
  2. Krushkal, Julia; Zhao, Yingdong; Roney, Kyle; Zhu, Weimin; Brooks,Alan; Wilsker,Deborah; Parchment, Ralph E; McShane, Lisa M; Doroshow, James H
  3. Epigenetics. 2024, Dec; 19(1): 2309824.
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