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  1. 1.   Deletion of a single CTCF motif at the boundary of a chromatin domain with three FGF genes disrupts gene expression and embryonic development
  2. Chakraborty, Shreeta; Wenzlitschke, Nina; Anderson,Matthew; Eraso, Ariel; Baudic, Manon; Thompson, Joyce J; Evans, Alicia A; Shatford-Adams, Lilly M; Chari,Raj; Awasthi,Roackie; Dale, Ryan K; Lewandoski,Mark; Petros, Timothy J; Rocha, Pedro P
  3. Developmental Cell. 2025, Feb 24;
  1. 2.   Tissue-Specific DNA Methylation Changes in CD8+ T Cells During Chronic Simian Immunodeficiency Virus Infection of Infant Rhesus Macaques
  2. Nag,Mukta; Fogle, Jonathan E; Pillay, Santhoshan; Del Prete,Greg; De Paris, Kristina
  3. Viruses. 2024, Nov 27; 16(12):
  1. 3.   African ancestry-derived APOL1 risk genotypes show proximal epigenetic associations
  2. Breeze, Charles E; Lin, Bridget M; Winkler,Cheryl; Franceschini, Nora
  3. BMC Genomics. 2024, May 08; 25(1): 452.
  1. 4.   Crystal Structure of an i-Motif from the HRAS Oncogene Promoter
  2. Li, Kevin S; Jordan, Deondre; Lin, Linda Y; McCarthy, Sawyer E; Schneekloth,Jay; Yatsunyk, Liliya A
  3. Angewandte Chemie (International ed. in English). 2023, Mar 30; e202301666.
  1. 5.   Matrin3 regulates mitotic spindle dynamics by controlling alternative splicing of CDC14B
  2. Muys, Bruna R; Shrestha, Roshan L; Anastasakis, Dimitrios G; Pongor, Lorinc; Li, Xiao Ling; Grammatikakis, Ioannis; Polash, Ahsan; Chari,Raj; Gorospe, Myriam; Harris, Curtis C; Aladjem, Mirit I; Basrai, Munira A; Hafner, Markus; Lal, Ashish
  3. Cell Reports. 2023, Mar 15; 42(3): 112260.
  1. 6.   hRpn13 shapes the proteome and transcriptome through epigenetic factors HDAC8, PADI4, and transcription factor NF-kB p50
  2. Osei Amponsa,Vasty; Chandravanshi,Monika; Lu,Xiuxiu; Magidson,Valentin; Das,Sudipto; Andresson,Thorkell; Dyba,Marzena; Sabbasani, Venkata R; Swenson, Rolf E; Fromont, Caroline; Shrestha,Biraj; Zhao,Yongmei; Clapp,Michelle; Chari,Raj; Walters,Kylie
  3. Molecular Cell. 2023, Feb 1; 84(3): 522-537.
  1. 7.   Non-specific and specific DNA binding modes of bacterial histone, HU, separately regulate distinct physiological processes through different mechanisms
  2. Verma, Subhash C; Harned,Adam; Narayan,Kedar; Adhya, Sankar
  3. Molecular Microbiology. 2023, Jan 27;
  1. 8.   Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis
  2. Han, Hong; Best, Andrew J; Braunschweig, Ulrich; Mikolajewicz, Nicholas; Li, Jack Daiyang; Roth, Jonathan; Chowdhury, Fuad; Mantica, Federica; Nabeel-Shah, Syed; Parada, Guillermo; Brown, Kevin R; O'Hanlon, Dave; Wei, Jiarun; Yao, Yuxi; Zid, Abdelrahman Abou; Comsa, Lim Caden; Jen, Mark; Wang, Jenny; Datti, Alessandro; Gonatopoulos Pournatzis,Thomas; Weatheritt, Robert J; Greenblatt, Jack F; Wrana, Jeffrey L; Irimia, Manuel; Gingras, Anne-Claude; Moffat, Jason; Blencowe, Benjamin J
  3. Molecular Cell. 2022, Jul 31; 82(16): 2982-2999.
  1. 9.   Homologs of the Escherichia coli F Element Protein TraR, Including Phage Lambda Orf73, Directly Reprogram Host Transcription
  2. Gopalkrishnan, Saumya; Ross, Wilma; Akbari, Madeline S; Li, Xintian; Haycocks, James R J; Grainger, David C; Court,Don; Gourse, Richard L
  3. mBio. 2022, May 18; e0095222.
  1. 10.   Transcriptome-Wide Effects of NusA on RNA Polymerase Pausing in Bacillus subtilis
  2. Jayasinghe, Oshadhi T; Mandell, Zachary F; Yakhnin,Alex; Kashlev,Mikhail; Babitzke, Paul
  3. Journal of Bacteriology. 2022, Mar 08; e0053421.
  1. 11.   High-Resolution Ribosome Profiling for Determining Ribosome Functional States During Translation Elongation
  2. Shafieinouri,Mohammad; Santiago Membreno,Britnie; Wu,Colin
  3. Methods in Molecular Biology (Clifton, N.J.). 2022 2428: 173-186.
  1. 12.   The potentials of short fragments of human anti-microbial peptide LL-37 as a novel therapeutic modality for diseases
  2. Chen,Keqiang; Gong, Wanghua; Huang,Jiaqiang; Yoshimura, Teizo; Wang,Jiming
  3. Frontiers in Bioscience - Landmark. 2021, Nov 30; 26(11): 1362-1372.
  1. 13.   The potentials of short fragments of human anti-microbial peptide LL-37 as a novel therapeutic modality for diseases
  2. Chen,Keqiang; Gong, Wanghua; Huang,Jiaqiang; Yoshimura, Teizo; Wang,Jiming
  3. Frontiers in Bioscience. 2021, Nov 30; 26(11): 1362-1372.
  1. 14.   The tumour microenvironment shapes innate lymphoid cells in patients with hepatocellular carcinoma
  2. Heinrich, Bernd; Gertz, E Michael; Schäffer, Alejandro A; Craig, Amanda; Ruf, Benjamin; Subramanyam, Varun; McVey, John C; Diggs, Laurence P; Heinrich, Sophia; Rosato, Umberto; Ma, Chi; Yan, Chunhua; Hu, Ying; Zhao,Yongmei; Shen,Tsai-Wei; Kapoor, Veena; Telford, William; Kleiner, David E; Stovroff, Merril K; Dhani, Harmeet S; Kang, Jiman; Fishbein, Thomas; Wang, Xin Wei; Ruppin, E; Kroemer, Alexander; Greten, Tim F; Korangy, Firouzeh
  3. Gut. 2021, Aug 02;
  1. 15.   Endothelial Recovery in Bare Metal Stents and Drug-Eluting Stents on a Single-Cell Level
  2. Cornelissen, Anne; Guo, Liang; Fernandez, Raquel; Kelly,Michael; Janifer, Christine; Kuntz, Salome; Sakamoto, Atsushi; Jinnouchi, Hiroyuki; Sato, Yu; Paek, Ka Hyun; Kolodgie, Frank D; Romero, Maria E; Surve, Dipti; Virmani, Renu; Finn, Aloke V
  3. Arteriosclerosis, thrombosis, and vascular biology. 2021, Aug; 41(8): 2277-2292.
  1. 16.   Arrow pushing in RNA modification sequencing
  2. Bartee,David; Thalalla Gamage,Supuni; Link,Courtney; Meier,Jordan
  3. Chemical Society reviews. 2021, Jul 14;
  1. 17.   Epigenetic Regulation of BST-2 Expression Levels and the Effect on HIV-1 Pathogenesis
  2. Singh, Ravesh; Ramsuran, Veron; Naranbhai, Vivek; Yende-Zuma, Nonhlanhla; Garrett, Nigel; Mlisana, Koleka; Dong, Krista L; Walker, Bruce D; Abdool Karim, Salim S; Carrington, Mary; Ndung'u, Thumbi
  3. Frontiers In Immunology. 2021, May 5; 12: 669241.
  1. 18.   Bioinformatic analysis linking genomic defects to chemosensitivity and mechanism of action
  2. Covell,David
  3. PloS one. 2021, Apr 28; 16(4):
  1. 19.   Tying the knot in the tetrahydrofolate (THF) riboswitch: A molecular basis for gene regulation
  2. Wilt,Haley; Yu,Ping; Tan, Kemin; Wang, Yun-Xing; Stagno,Jason
  3. Journal of Structural Biology. 2021, Mar; 213(1):
  1. 20.   An Integrated Epigenomic and Transcriptomic Map of Mouse and Human aß T Cell Development
  2. Chopp, Laura B; Gopalan, Vishaka; Ciucci, Thomas; Ruchinskas,Allison; Rae, Zachary; Lagarde, Manon; Gao, Yayi; Li, Caiyi; Bosticardo, Marita; Pala, Francesca; Livak, Ferenc; Kelly,Michael; Hannenhalli, Sridhar; Bosselut, Rémy
  3. Immunity. 2020, Dec 15; 53(6): 1182-1201.e8.
  1. 21.   NusG-dependent RNA polymerase pausing is a frequent function of this universally conserved transcription elongation factor
  2. Yakhnin, Alexander V; Kashlev,Mikhail; Babitzke, Paul
  3. Critical reviews in biochemistry and molecular biology. 2020, Oct 02; 1-13.
  1. 22.   Epigenome-wide DNA methylation analysis of small cell lung cancer cell lines suggests potential chemotherapy targets
  2. Krushkal, Julia; Silvers,Thomas; Reinhold, William C; Sonkin, Dmitriy; Vural, Suleyman; Connelly, John; Varma, Sudhir; Meltzer, Paul S; Kunkel, Mark; Rapisarda,Annamaria; Evans, David; Pommier, Yves; Teicher, Beverly A
  3. Clinical epigenetics. 2020, Jun 25; 12(1): 93.
  1. 23.   Loss of tetherin antagonism by Nef impairs SIV replication during acute infection of rhesus macaques
  2. Tavakoli-Tameh, Aidin; Janaka, Sanath Kumar; Zarbock, Katie; O'Connor, Shelby; Crosno, Kristin; Capuano, Saverio; Uno, Hajime; Lifson,Jeffrey; Evans, David T
  3. PLoS pathogens. 2020, Apr 17; 16(4): e1008487.
  1. 24.   The Contribution of Chemoattractant GPCRs, Formylpeptide Receptors, to Inflammation and Cancer
  2. Liang, Weiwei; Chen,Keqiang; Gong,Wang; Yoshimura, Teizo; Le, Yingying; Wang, Ying; Wang,Jiming
  3. Frontiers in endocrinology. 2020, Jan 24; 11
  1. 25.   Differential Expression of the Transcription Factor GATA3 Specifies Lineage and Functions of Innate Lymphoid Cells
  2. Zhong, Chao; Zheng, Mingzhu; Cui, Kairong; Martins, Andrew J; Hu, Gangqing; Li, Dan; Tessarollo,Lino; Kozlov,Serguei; Keller,Jonathan; Tsang, John S; Zhao, Keji; Zhu, Jinfang
  3. Immunity. 2020, JAN 14; 52(1): 83-+.
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