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  1. 1.   Mechanism of Catalysis by L-Asparaginase
  2. Lubkowski,Jacek; Vanegas, Juan Manuel; Chan, Wai-Kin; Lorenzi, Philip L.; Weinstein, John N.; Sukharev, Sergei; Fushman, David; Rempe, Susan B.; Anishkin, Andriy; Wlodawer,Alexander
  3. BIOCHEMISTRY. 2020, MAY 26; 59(20): 1927-1945.
  1. 2.   Swinhopeptolides A and B: Cyclic Depsipeptides from the Sponge Theonella swinhoei That Inhibit Ras/Raf Interaction
  2. Kim,Chang-Kwon; Wang,Dongdong; Bokesch,Heidi; Fuller,Richard; Smith,Emily; Henrich,Curtis; Durrant,David; Morrison,Deborah; Bewley, Carole A; Gustafson,Kirk
  3. Journal of natural products. 2020, APR 24; 83(4): 1288-1294.
  1. 3.   Characterization of Recombinant Human IL-15 Deamidation and Its Practical Elimination through Substitution of Asparagine 77
  2. Nellis, D. F.; Michiel, D. F.; Jiang, M. S.; Esposito, D.; Davis, R.; Jiang, H. G.; Korrell, A.; Knapp, G. C.; Lucernoni, L. E.; Nelson, R. E.; Pritt, E. M.; Procter, L. V.; Rogers, M.; Sumpter, T. L.; Vyas, V. V.; Waybright, T. J.; Yang, X. Y.; Zheng, A. M.; Yovandich, J. L.; Gilly, J. A.; Mitra, G.; Zhu, J. W.
  3. Pharmaceutical Research. 2012, Mar; 29(3): 722-738.
  1. 4.   Disordered Proteins and Network Disorder in Network Descriptions of Protein Structure, Dynamics and Function: Hypotheses and a Comprehensive Review
  2. Csermely, P.; Sandhu, K. S.; Hazai, E.; Hoksza, Z.; Kiss, H. J. M.; Miozzo, F.; Veres, D. V.; Piazza, F.; Nussinov, R.
  3. Current Protein & Peptide Science. 2012, Feb; 13(1): 19-33.
  1. 5.   Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties
  2. Shi, G. B.; Shaw, G.; Liang, Y. H.; Subburaman, P.; Li, Y.; Wu, Y.; Yan, H. G.; Ji, X. H.
  3. Bioorganic & Medicinal Chemistry. 2012, Jan; 20(1): 47-57.
  1. 6.   Histone Deacetylase Inhibitors from Burkholderia thailandensis
  2. Klausmeyer, P.; Shipley, S. M.; Zuck, K. M.; McCloud, T. G.
  3. Journal of Natural Products. 2011, Oct; 74(10): 2039-2044.
  1. 7.   Integrating the intrinsic conformational preferences of noncoded alpha-amino acids modified at the peptide bond into the Noncoded Amino acids Database
  2. Revilla-Lopez, G.; Rodriguez-Ropero, F.; Curco, D.; Torras, J.; Calaza, M. I.; Zanuy, D.; Jimenez, A. I.; Cativiela, C.; Nussinov, R.; Aleman, C.
  3. Proteins-Structure Function and Bioinformatics. 2011, Jun; 79(6): 1841-1852.
  1. 8.   Role of Protein Conformational Dynamics in the Catalysis by 6-Hydroxymethyl-7, 8-Dihydropterin Pyrophosphokinase
  2. Yan, H. G.; Ji, X. H.
  3. Protein and Peptide Letters. 2011, Apr; 18(4): 328-335.
  1. 9.   Clarification of the Mechanism of Acylation Reaction and Origin of Substrate Specificity of the Serine-Carboxyl Peptidase Sedolisin through QM/MM Free Energy Simulations
  2. Xu, Q.; Yao, J. Z.; Wlodawer, A.; Guo, H.
  3. Journal of Physical Chemistry B. 2011, Mar; 115(10): 2470-2476.
  1. 10.   Conformational ensembles, signal transduction and residue hot spots: Application to drug discovery
  2. Ozbabacan, S. E. A.; Gursoy, A.; Keskin, O.; Nussinov, R.
  3. Current Opinion in Drug Discovery & Development. 2010, Sep; 13(5): 527-537.
  1. 11.   Topology of the disulfide bonds in the antiviral lectin scytovirin
  2. Moulaei, T.; Stuchlik, O.; Reed, M.; Yuan, W. R.; Pohl, J.; Lu, W. Y.; Haugh-Krumpe, L.; O'Keefe, B. R.; Wlodawer, A.
  3. Protein Science. 2010, Sep; 19(9): 1649-1661.
  1. 12.   Comparing interfacial dynamics in protein-protein complexes: an elastic network approach
  2. Zen, A.; Micheletti, C.; Keskin, O.; Nussinov, R.
  3. Bmc Structural Biology. 2010, Aug; 10: 13.
  1. 13.   FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking
  2. Mashiach, E.; Nussinov, R.; Wolfson, H. J.
  3. Nucleic Acids Research. 2010, Jul; 38: W457-W461.
  1. 14.   The "Connection" Between HIV Drug Resistance and RNase H
  2. Delviks-Frankenberry, K. A.; Nikolenko, G. N.; Pathak, V. K.
  3. Viruses-Basel. 2010, Jul; 2(7): 1476-1503.
  1. 15.   HIV-1 Integrase and Virus and Cell DNAs: Complex Formation and Perturbation by Inhibitors of Integration
  2. Hobaika, Z.; Zargarian, L.; Maroun, R. G.; Mauffret, O.; Burke, T. R.; Ferm, jian
  3. Neurochemical Research. 2010, Jun; 35(6): 888-893.
  1. 16.   Multiple ways of targeting APOBEC3-virion infectivity factor interactions for anti-HIV-1 drug development
  2. Smith, J. L.; Bu, W.; Burdick, R. C.; Pathak, V. K.
  3. Trends in Pharmacological Sciences. 2009, Dec; 30(12): 638-646.
  1. 17.   Site Specific Conjugation of Fluoroprobes to the Remodeled Fc N-Glycans of Monoclonal Antibodies Using Mutant Glycosyltransferases: Application for Cell Surface Antigen Detection
  2. Boeggeman, E.; Ramakrishnan, B.; Pasek, M.; Manzoni, M.; Puri, A.; Loomis, K. H.; Waybright, T. J.; Qasba, P. K.
  3. Bioconjugate Chemistry. 2009 20(6): 1228-1236.
  1. 18.   The Nucleocapsid Region of Human Immunodeficiency Virus Type 1 Gag Assists in the Coordination of Assembly and Gag Processing: Role for RNA-Gag Binding in the Early Stages of Assembly
  2. Ott, D. E.; Coren, L. V.; Shatzer, T.
  3. Journal of Virology. 2009 83(15): 7718-7727.
  1. 19.   Multiple Site-Specific in Vitro Labeling of Single-Chain Antibody
  2. Ramakrishnan, B.; Boeggeman, E.; Manzoni, M.; Zhu, Z. Y.; Loomis, K.; Puri, A.; Dimitrov, D. S.; Qasba, P. K.
  3. Bioconjugate Chemistry. 2009 20(7): 1383-1389.
  1. 20.   Structural Basis for Binding of RNA and Cofactor by a KsgA Methyltransferase
  2. Tu, C.; Tropea, J. E.; Austin, B. P.; Court, D. L.; Waugh, D. S.; Ji, X. H.
  3. Structure. 2009 17(3): 374-385.
  1. 21.   In Silico Molecular Engineering for a Targeted Replacement in a Tumor-Homing Peptide
  2. Zanuy, D.; Flores-Ortega, A.; Jimenez, A. I.; Calaza, M. I.; Cativiela, C.; Nussinov, R.; Ruoslahti, E.; Aleman, C.
  3. Journal of Physical Chemistry B. 2009 113(22): 7879-7889.
  1. 22.   Intrinsic conformational preferences of C-alpha,C-alpha-dibenzylglycine
  2. Casanovas, J.; Nussinov, R.; Aleman, C.
  3. Journal of Organic Chemistry. 2008 73(11): 4205-4211.
  1. 23.   Ty3 nucleocapsid controls localization of particle assembly
  2. Larsen, L.; Beliakova-Bethell, N.; Bilanchone, V.; Zhang, M.; Lamsa, A.; DaSilva, R.; Hatfield, G. W.; Nagashima, K.; S, meyer
  3. Journal of Virology. 2008 82(5): 2501-2514.
  1. 24.   Applications of glycosyltransferases in the site-specific conjugation of biomolecules and the development of a targeted drug delivery system and contrast agents for MRI
  2. Ramakrishnan, B.; Boeggeman, E.; Qasba, P. K.
  3. Expert Opinion on Drug Delivery. 2008 5(2): 149-153.
  1. 25.   The energy landscape of a selective tumor-homing pentapeptide
  2. Zanuy, D.; Flores-Ortega, A.; Casanovas, J.; Curco, D.; Nussinov, R.; Aleman, C.
  3. Journal of Physical Chemistry B. 2008 112(29): 8692-8700.
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