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  1. 1.   Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing
  2. Xiao, Wenming; Ren, Luyao; Chen, Zhong; Fang, Li Tai; Zhao,Yongmei; Lack,Justin; Guan, Meijian; Zhu, Bin; Jaeger, Erich; Kerrigan, Liz; Blomquist, Thomas M.; Hung, Tiffany; Sultan, Marc; Idler, Kenneth; Lu, Charles; Scherer, Andreas; Kusko, Rebecca; Moos, Malcolm; Xiao, Chunlin; Sherry, Stephen T.; Abaan, Ogan D.; Chen, Wanqiu; Chen, Xin; Nordlund, Jessica; Liljedahl, Ulrika; Maestro, Roberta; Polano, Maurizio; Drabek, Jiri; Vojta, Petr; Koks, Sulev; Reimann, Ene; Madala, Bindu Swapna; Mercer, Timothy; Miller, Chris; Jacob, Howard; Truong, Tiffany; Moshrefi, Ali; Natarajan, Aparna; Granat, Ana; Schroth, Gary P.; Kalamegham, Rasika; Peters, Eric; Petitjean, Virginie; Walton,Ashley; Shen,Tsai-Wei; Talsania,Keyur; Vera, Cristobal Juan; Langenbach, Kurt; de Mars, Maryellen; Hipp, Jennifer A.; Willey, James C.; Wang, Jing; Shetty,Jyoti; Kriga,Yuliya; Raziuddin,Arati; Tran,Bao; Zheng, Yuanting; Yu, Ying; Cam, Margaret; Jailwala, Parthav; Meerzaman, Daoud; Chen, Qingrong; Yan, Chunhua; Ernest, Ben; Mehra, Urvashi; Jensen, Roderick; Jones, Wendell; Li, Jian-Liang; Papas, Brian N.; Pirooznia, Mehdi; Chen, Yun-Ching; Seifuddin, Fayaz; Li, Zhipan; Liu, Xuelu; Resch, Wolfgang; Wang, Jingya; Wu, Leihong; Yavas, Gokhan; Miles, Corey; Ning, Baitang; Tong, Weida; Mason, Christopher E.; Donaldson, Eric; Lababidi, Samir; Staudt, Louis M.; Tezak, Zivana; Hong, Huixiao; Wang, Charles; Shi, Leming
  3. Nature Biotechnology. 2021, Sep; 39(9): 1141-1150.
  1. 2.   Power of Microbiome Beta-Diversity Analyses Based on Standard Reference Samples
  2. Gail, Mitchell H; Wan,Yunhu; Shi, Jianxin
  3. American journal of epidemiology. 2021, Mar; 190(3): 439-447.
  1. 3.   An analytical pipeline for identifying and mapping the integration sites of HIV and other retroviruses
  2. Wells,Daria; Guo,Amber; Shao,Wei; Bale,Michael; Coffin, John M; Hughes,Stephen; Wu,Xiaolin
  3. BMC genomics. 2020, Mar 09; 21(1): 216.
  1. 4.   Quantitation of Multiple Sphingolipid Classes Using Normal and Reversed-Phase LC-ESI-MS/MS: Comparative Profiling of Two Cell Lines
  2. Masood, M. A.; Rao, R. P.; Acharya, J. K.; Blonder, J.; Veenstra, T. D.
  3. Lipids. 2012, Feb; 47(2): 209-226.
  1. 5.   Matrix-assisted laser desorption/ionization mass spectrometry reveals decreased calcylcin expression in small cell lung cancer
  2. Lee, H. S.; Park, J. W.; Chertov, O.; Colantonio, S.; Simpson, J. T.; Fivash, M. J.; Yoo, C. W.; Lee, G. K.; Zo, J. I.; Kim, H. T.; Kim, H. K.
  3. Pathology International. 2012, Jan; 62(1): 28-35.
  1. 6.   Quantitation of ceramide phosphorylethanolamines containing saturated and unsaturated sphingoid base cores
  2. Masood, M. A.; Yuan, C. Q.; Acharya, J. K.; Veenstra, T. D.; Blonder, J.
  3. Analytical Biochemistry. 2010, May 15; 400(2): 259-269.
  1. 7.   Genetic Structure in Contemporary South Tyrolean Isolated Populations Revealed by Analysis of Y-Chromosome, mtDNA, and Alu Polymorphisms
  2. Pichler, I.; Mueller, J. C.; Stefanov, S. A.; de Grandi, A.; Volpato, C. B.; Pinggera, G. K.; Mayr, A.; Ogriseg, M.; Ploner, F.; Meitinger, T.; Pramstaller, P. P.
  3. Human Biology. 2009, Oct-Dec; 81(5-6): 875-898.
  1. 8.   2D-PCR: a method of mapping DNA in tissue sections
  2. Armani, M.; Rodriguez-Canales, J.; Gillespie, J.; Tangrea, M.; Erickson, H.; Emmert-Buck, M. R.; Shapiro, B.; Smela, E.
  3. Lab on a Chip. 2009 9(24): 3526-3534.
  1. 9.   Oral Human Papillomavirus Infection Before and After Treatment for Human Papillomavirus 16-Positive and Human Papillomavirus 16-Negative Head and Neck Squamous Cell Carcinoma
  2. Agrawal, Y.; Koch, W. M.; Xiao, W.; Westra, W. H.; Trivett, A. L.; Symer, D. E.; Gillison, M. L.
  3. Clinical Cancer Research. 2008 14(21): 7143-7150.
  1. 10.   Validation of the performance of a comprehensive genotyping assay panel of single nucleotide polymorphisms in drug metabolism enzyme genes
  2. Welch, R. A.; Lazaruk, K.; Haque, K. A.; Hyl, F.; Xiao, N. Q.; Wronka, L.; Burdett, L.; Chanock, S. J.; Ingber, D.; De La Vega, F. M.; Yeager, M.
  3. Human Mutation. 2008 29(5): 750-756.
  1. 11.   Reliability of high-throughput genotyping of whole genome amplified DNA in SNP genotyping studies
  2. Berthier-Schaad, Y.; Kao, W. H. L.; Coresh, J.; Zhang, L.; Ingersoll, R. G.; Stephens, R.; Smith, M. W.
  3. Electrophoresis. 2007, Aug; 28(16): 2812-2817.
  1. 12.   ISHAPE: new rapid and accurate software for haplotyping
  2. Delaneau, O.; Coulonges, C.; Boelle, P. Y.; Nelson, G.; Spadoni, J. L.; Zagury, J. F.
  3. Bmc Bioinformatics. 2007, Jun; 8
  1. 13.   Genetic structure in contemporary South Tyrolean isolated populations revealed by analysis of Y-chromosome, mtDNA, and Alu polymorphisms
  2. Pichler, I.; Mueller, J. C.; Stefanov, S. A.; de Grandi, A.; Volpato, C. B.; Pinggera, G. K.; Mayr, A.; Ogriseg, M.; Ploner, F.; Meitinger, T.; Pramstaller, P. P.
  3. Human Biology. 2006, Aug; 78(4): 441-464.
  1. 14.   High-sensitivity bacterial detection using biotin-tagged phage and quantum-dot nanocomplexes
  2. Edgar, R.; McKinstry, M.; Hwang, J.; Oppenheim, A. B.; Fekete, R. A.; Giulian, G.; Merril, C.; Nagashima, K.; Adhya, S.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2006, Mar; 103(13): 4841-4845.
  1. 15.   Distribution of Epstein-Barr viral load in serum of individuals from nasopharyngeal carcinoma high-risk families in Taiwan
  2. Yang, X. H. R.; Goldstein, A. M.; Chen, C. J.; Rabkin, C. S.; Chen, J. Y.; Cheng, Y. J.; Hsu, W. L.; Sun, B.; Diehl, S. R.; Liu, M. Y.; Walters, M.; Shao, W.; Ortiz-Conde, B. A.; Whitby, D.; Elmore, S. H.; Gulley, M. L.; Hildesheim, A.
  3. International Journal of Cancer. 2006, MAR 1; 118(3): 780-784.
  1. 16.   Global gene expression associated with hepatocarcinogenesis in adult male mice induced by in utero arsenic exposure
  2. Liu, J.; Xie, Y. X.; Ducharme, D. M. K.; Shen, J.; Diwan, B. A.; Merrick, B. A.; Grissom, S. F.; Tucker, C. J.; Paules, R. S.; Tennant, R.; Waalkes, M. P.
  3. Environmental Health Perspectives. 2006, MAR; 114(3): 404-411.
  1. 17.   Long-term storage and recovery of buccal cell DNA from treated cards
  2. Sigurdson, A. J.; Ha, M.; Cosentino, M.; Franklin, T.; Haque, K. A.; Qi, Y.; Glaser, C.; Reid, Y.; Vaught, J. B.; Bergen, A. W.
  3. Cancer Epidemiology Biomarkers & Prevention. 2006, Feb; 15(2): 385-388.
  1. 18.   Unknown biological mixtures evaluation using STR analytical quantification
  2. Shrestha, S.; Strathdee, S. A.; Broman, K. W.; Smith, M. W.
  3. Electrophoresis. 2006, FEB; 27(2): 409-415.
  1. 19.   LC-MS in metabonomics: Optimization of experimental conditions for the analysis of metabolites in human urine
  2. Waybright, T. J.; Van, Q. N.; Muschik, G. M.; Conrads, T. P.; Veenstra, T. D.; Issaq, H. J.
  3. Journal of Liquid Chromatography & Related Technologies. 2006 29(17): 2475-2497.
  1. 20.   Prednisolone pharmacokinetics in the presence and absence of Ritonavir after oral prednisone administration to healthy volunteers
  2. Penzak, S. R.; Fomnentini, E.; Alfaro, R. M.; Long, M.; Natarajan, V.; Kovacs, J.
  3. Jaids-Journal of Acquired Immune Deficiency Syndromes. 2005, DEC 15; 40(5): 573-580.
  1. 21.   Analysis of mass spectral serum profiles for biomarker selection
  2. Ressom, H. W.; Varghese, R. S.; bdel-Hamid, M.; Eissa, S. A. L.; Saha, D.; Goldman, L.; Petricoin, E. F.; Conrads, T. P.; Veenstra, T. D.; Loffredo, C. A.; Goldman, R.
  3. Bioinformatics. 2005, NOV 1; 21(21): 4039-4045.
  1. 22.   Sensitive phenotypic detection of minor drug-resistant human immunodeficiency virus type 1 reverse transcriptase variants
  2. Nissley, D. V.; Halvas, E. K.; Hoppman, N. L.; Garfinkel, D. J.; Mellors, J. W.; Strathern, J. N.
  3. Journal of Clinical Microbiology. 2005, NOV; 43(11): 5696-5704.
  1. 23.   Assortative mating in Drosophila adapted to a microsite ecological gradient
  2. Singh, S. R.; Rashkovetsky, E.; Iliadi, K.; Nevo, E.; Korol, A.
  3. Behavior Genetics. 2005, NOV; 35(6): 753-764.
  1. 24.   ABCA3 mutations associated with pediatric interstitial lung disease
  2. Bullard, J. E.; Wert, S. E.; Whitsett, J. A.; Dean, M.; Nogee, L. M.
  3. American Journal of Respiratory and Critical Care Medicine. 2005, OCT 15; 172(8): 1026-1031.
  1. 25.   Measuring fifteen endogenous estrogens simultaneously in human urine by high-performance liquid chromatography-mass spectrometry
  2. Xu, X.; Veenstra, T. D.; Fox, S. D.; Roman, J. M.; Issaq, H. J.; Falk, R.; Saavedra, J. E.; Keefer, L. K.; Ziegler, R. G.
  3. Analytical Chemistry. 2005, OCT 15; 77(20): 6646-6654.
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