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  1. 1.   Association of changes in expression of HDAC and SIRT genes after drug treatment with cancer cell line sensitivity to kinase inhibitors
  2. Krushkal, Julia; Zhao, Yingdong; Roney, Kyle; Zhu, Weimin; Brooks,Alan; Wilsker,Deborah; Parchment, Ralph E; McShane, Lisa M; Doroshow, James H
  3. Epigenetics. 2024, Dec; 19(1): 2309824.
  1. 2.   Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome
  2. Masood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G; Zheng, Lily; Zhao,Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A; Xiao, Wenming; Meerzaman, Daoud M
  3. Genome Biology. 2024, Jun 20; 25(1): 163.
  1. 3.   Enhanced immune complex formation in the lungs of patients with dermatomyositis
  2. Zaizen, Yoshiaki; Okamoto, Masaki; Azuma, Koichi; Fukuoka, Junya; Hozumi, Hironao; Sakamoto, Noriho; Suda, Takafumi; Mukae, Hiroshi; Hoshino,Tomoaki
  3. Respiratory Research. 2023, Mar 19; 24(1): 86.
  1. 4.   Toward the determination of sensitive and reliable whole-lung computed tomography features for robust standard radiomics and delta-radiomics analysis in a nonhuman primate model of coronavirus disease 2019
  2. Castro, Marcelo A; Reza, Syed; Chu, Winston T; Bradley, Dara; Lee, Ji Hyun; Crozier,Ian; Sayre, Philip J; Lee, Byeong Y; Mani, Venkatesh; Friedrich, Thomas C; O'Connor, David H; Finch, Courtney L; Worwa, Gabriella; Feuerstein, Irwin M; Kuhn, Jens H; Solomon,Jeffrey
  3. Journal of Medical Imaging (Bellingham, Wash.). 2022, Nov; 9(6): 066003.
  1. 5.   ARAF protein kinase activates RAS by antagonizing its binding to RASGAP NF1
  2. Su, Wenjing; Mukherjee, Radha; Yaeger, Rona; Son, Jieun; Xu, Jianing; Na, Na; Merna Timaul, Neilawattie; Hechtman, Jaclyn; Paroder, Viktoriya; Lin, Mika; Mattar, Marissa; Qiu, Juan; Chang, Qing; Zhao, Huiyong; Zhang, Jonathan; Little, Megan; Adachi, Yuta; Han, Sae-Won; Taylor, Barry S; Ebi, Hiromichi; Abdel-Wahab, Omar; de Stanchina, Elisa; Rudin, Charles M; Jänne, Pasi A; McCormick, Frank; Yao, Zhan; Rosen, Neal
  3. Molecular Cell. 2022, May 14;
  1. 6.   A cross-study analysis of drug response prediction in cancer cell lines
  2. Xia, Fangfang; Allen, Jonathan; Balaprakash, Prasanna; Brettin, Thomas; Garcia-Cardona, Cristina; Clyde, Austin; Cohn, Judith; Doroshow,Jim; Duan, Xiaotian; Dubinkina, Veronika; Evrard,Yvonne; Fan, Ya Ju; Gans, Jason; He, Stewart; Lu,Pinyi; Maslov, Sergei; Partin, Alexander; Shukla, Maulik; Stahlberg,Eric; Wozniak, Justin M; Yoo, Hyunseung; Zaki,George; Zhu, Yitan; Stevens, Rick
  3. Briefings in Bioinformatics. 2021, Sep 14;
  1. 7.   Genomic and evolutionary classification of lung cancer in never smokers
  2. Zhang, Tongwu; Joubert, Philippe; Ansari-Pour, Naser; Zhao, Wei; Hoang, Phuc H.; Lokanga, Rachel; Moye, Aaron L.; Rosenbaum, Jennifer; Gonzalez-Perez, Abel; Martinez-Jimenez, Francisco; Castro, Andrea; Muscarella, Lucia Anna; Hofman, Paul; Consonni, Dario; Pesatori, Angela C.; Kebede, Michael; Li, Mengying; Rothberg, Bonnie E. Gould; Peneva, Iliana; Schabath, Matthew B.; Poeta, Maria Luana; Costantini, Manuela; Hirsch, Daniela; Heselmeyer-Haddad, Kerstin; Hutchinson,Amy; Olanich, Mary; Lawrence,Scott; Lenz,Petra; Duggan, Maire; Bhawsar, Praphulla M. S.; Sang, Jian; Kim, Jung; Mendoza, Laura; Saini, Natalie; Klimczak, Leszek J.; Islam, S. M. Ashiqul; Otlu, Burcak; Khandekar, Azhar; Cole,Nathan; Stewart, Douglas R.; Choi, Jiyeon; Brown, Kevin M.; Caporaso, Neil E.; Wilson, Samuel H.; Pommier, Yves; Lan, Qing; Rothman, Nathaniel; Almeida, Jonas S.; Carter, Hannah; Ried, Thomas; Kim, Carla F.; Lopez-Bigas, Nuria; Garcia-Closas, Montserrat; Shi, Jianxin; Bosse, Yohan; Zhu, Bin; Gordenin, Dmitry A.; Alexandrov, Ludmil B.; Chanock, Stephen J.; Wedge, David C.; Landi, Maria Teresa
  3. Nature genetics. 2021, Sep; 53(9): 1348-1359.
  1. 8.   Differential Outcomes in Codon 12/13 and Codon 61 NRAS-Mutated Cancers in the Phase II NCI-MATCH Trial of Binimetinib in Patients with NRAS-Mutated Tumors
  2. Cleary, James M.; Wang, Victoria; Heist, Rebecca S.; Kopetz, E. Scott; Mitchell, Edith P.; Zwiebel, James A.; Kapner, Kevin S.; Chen, Helen X.; Li, Shuli; Gray, Robert J.; McShane, Lisa M.; Rubinstein, Larry V.; Patton, David R.; Meric-Bernstam, Funda; Dillmon, Melissa S.; Williams,Mickey; Hamilton, Stanley R.; Conley, Barbara A.; Aguirre, Andrew J.; O'Dwyer, Peter J.; Harris, Lyndsay N.; Arteaga, Carlos L.; Chen, Alice P.; Flaherty, Keith T.
  3. Clinical cancer research : an official journal of the American Association for Cancer Research. 2021, Jun 1; 27(11): 2996-3004.
  1. 9.   Bioinformatic analysis linking genomic defects to chemosensitivity and mechanism of action
  2. Covell,David
  3. PloS one. 2021, Apr 28; 16(4):
  1. 10.   In pursuit of sensitivity: Lessons learned from viral nucleic acid detection and quantification on the raindance ddPCR platform
  2. Long, Samuel
  3. Methods. 2021, Apr 9; 201: 82-95.
  1. 11.   Frequency of Pathogenic Germline Variants in Cancer-Susceptibility Genes in the Childhood Cancer Survivor Study
  2. Kim, Jung; Gianferante, Matthew; Karyadi, Danielle M.; Hartley, Stephen W.; Frone, Megan N.; Luo,Wen; Robison, Leslie L.; Armstrong, Gregory T.; Bhatia, Smita; Dean,Michael; Yeager,Meredith; Zhu,Bin; Song, Lei; Sampson, Joshua N.; Yasui, Yutaka; Leisenring, Wendy M.; Brodie,Seth; de Andrade, Kelvin C.; Fortes, Fernanda P.; Goldstein, Alisa M.; Khincha, Payal P.; Machiela, Mitchell J.; McMaster, Mary L.; Nickerson, Michael L.; Oba, Leatrisse; Pemov, Alexander; Pinheiro, Maisa; Rotunno, Melissa; Santiago, Karina; Wegman-Ostrosky, Talia; Diver, W. Ryan; Teras, Lauren; Freedman, Neal D.; Hicks,Belynda; Wang,Mingyi; Jones,Kristine; Hutchinson,Amy; Dagnall,Casey; Savage, Sharon A.; Tucker, Margaret A.; Chanock, Stephen J.; Morton, Lindsay M.; Stewart, Douglas R.; Mirabello, Lisa
  3. JNCI cancer spectrum. 2021, Apr; 5(2):
  1. 12.   Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report
  2. Kim, Doyoung; Kobayashi, Tetsuro; Voisin, Benjamin; Jo, Jay-Hyun; Sakamoto, Keiko; Jin, Seon-Pil; Kelly,Michael; Pasieka, Helena B; Naff, Jessica L; Meyerle, Jon H; Ikpeama, Ijeoma D; Fahle, Gary A; Davis, Fred P; Rosenzweig, Sergio D; Alejo, Julie C; Pittaluga, Stefania; Kong, Heidi H; Freeman, Alexandra F; Nagao, Keisuke
  3. Nature medicine. 2020, Jan 20;
  1. 13.   Characterization by Empirical and Computational Methods of Dictyospiromide, an Intriguing Antioxidant Alkaloid from the Marine Alga Dictyota coriacea
  2. Yan, Pengcheng; Li, Ge; Wang, Chaojie; Wu, Jianzhang; Sun, Zhongmin; Martin, Gary E; Wang, Xiao; Reibarkh, Mikhail; Saurí, Josep; Gustafson,Kirk
  3. Organic letters. 2019, Sep 20; 21(18): 7577-7581.
  1. 14.   Modulation of Target Antigen Density Improves CAR T-cell Functionality and Persistence
  2. Ramakrishna, Sneha; Highfill, Steven L.; Walsh, Zachary; Nguyen, Sang M.; Lei, Haiyan; Shern, Jack F.; Qin, Haiying; Kraft, Ira L.; Stetler-Stevenson, Maryalice; Yuan, Constance M.; Hwang, Jennifer D.; Feng,Yang; Zhu, Zhongyu; Dimitrov, Dimiter; Shah, Nirali N.; Fry, Terry J.
  3. CLINICAL CANCER RESEARCH. 2019, Sep 1; 25(17): 5329-5341.
  1. 15.   AAV-delivered eCD4-Ig protects rhesus macaques from high-dose SIVmac239 challenges
  2. Gardner, Matthew R; Fellinger, Christoph H; Kattenhorn, Lisa M; Davis-Gardner, Meredith E; Weber, Jesse A; Alfant, Barnett; Zhou, Amber S; Prasad, Neha R; Kondur, Hema R; Newton, Wendy A; Weisgrau, Kimberly L; Rakasz, Eva G; Lifson,Jeffrey; Gao, Guangping; Schultz-Darken, Nancy; Farzan, Michael
  3. Science translational medicine. 2019, Jul 24; 11(502): pii: eaau5409.
  1. 16.   Nanoparticle physicochemical properties determine the activation of intracellular complement
  2. Ilinskaya, Anna N.; Shah, Ankit; Enciso, Alan E.; Chan,King; Kaczmarczyk,Jan; Blonder,Josip; Simanek, Eric E.; Dobrovolskaia,Marina
  3. Nanomedicine : nanotechnology, biology, and medicine. 2019, APR; 17: 266-275.
  1. 17.   Blood Interactions, Pharmacokinetics, and Depth-Dependent Ablation of Rat Mammary Tumors with Photoactivatable, Liposomal Doxorubicin
  2. Carter, Kevin A.; Luo, Dandan; Geng, Jumin; Stern, Steve; Lovell, Jonathan F.
  3. Molecular cancer therapeutics. 2019, Mar; 18(3): 592-601.
  1. 18.   Acute physiological changes caused by complement activators and amphotericin B-containing liposomes in mice
  2. Orfi, Erik; Meszaros, Tamas; Hennies, Mark; Fulop, Tamas; Dezsi, Laszlo; Nardocci, Alexander; Rosivall, Laszlo; Hamar, Peter; Neun, Barry; Dobrovolskaia, Marina; Szebeni, Janos; Szenasi, Gabor
  3. International journal of nanomedicine. 2019, Feb 26; 14: 1563-1573.
  1. 19.   Roadmap and strategy for overcoming infusion reactions to nanomedicines
  2. Szebeni, Janos; Simberg, Dmitri; Gonzalez-Fernandez, Africa; Barenholz, Yechezkel; Dobrovolskaia,Marina
  3. Nature nanotechnology. 2018, Dec; 13(12): 1100-1108.
  1. 20.   Multiple configurations of EGFR exon 20 resistance mutations after first- and third-generation EGFR TKI treatment affect treatment options in NSCLC
  2. Goldberg, Michael E.; Montesion, Meagan; Young, Lauren; Suh, James; Greenbowe, Joel; Kennedy, Mark; Giaccone, Giuseppe; Akerley, Wallace L.; Dowlati, Afshin; Creelan, Benjamin C.; Hicks, James K.; Hesketh, Paul J.; Kelly, Karen L.; Riess, Jonathan W.; Miller, Vincent A.; Stephens, Philip J.; Frampton, Garrett M.; Ali, Siraj; Gregg, Jeffrey P.; Albacker, Lee A.
  3. PLOS ONE. 2018, NOV 27; 13(11):
  1. 21.   Understanding the Role of Anti-PEG Antibodies in the Complement Activation by Doxil in Vitro
  2. Neun, Barry; Barenholz, Yechezkel; Szebeni, Janos; Dobrovolskaia, Marina
  3. Molecules. 2018, Jul 12; 23(7): pii: E1700.
  1. 22.   Cancer-associated epithelial cell adhesion molecule (EpCAM; CD326) enables epidermal Langerhans cell motility and migration in vivo
  2. Gaiser, M. R.; Lammermann, T.; Feng, X.; Igyarto, B. Z.; Kaplan, D. H.; Tessarollo, L.; Germain, R. N.; Udey, M. C.
  3. Proceedings of the National Academy of Sciences of the United States of America. 2012, Apr; 109(15): E889-E897.
  1. 23.   Partial immune reconstitution of X-linked hyper IgM syndrome with recombinant CD40 ligand
  2. Jain, A.; Kovacs, J. A.; Nelson, D. L.; Migueles, S. A.; Pittaluga, S.; Fanslow, W.; Fan, X. Y.; Wong, D. W.; Massey, J.; Hornung, R.; Brown, M. R.; Spinner, J. J.; Liu, S. Y.; Davey, V.; Hill, H. A.; Ochs, H.; Fleisher, T. A.
  3. Blood. 2011, Oct; 118(14): 3811-3817.
  1. 24.   Correlating SHAPE signatures with three-dimensional RNA structures
  2. Bindewald, E.; Wendeler, M.; Legiewicz, M.; Bona, M. K.; Wang, Y.; Pritt, M. J.; Le Grice, S. F. J.; Shapiro, B. A.
  3. Rna-a Publication of the Rna Society. 2011, Sep; 17(9): 1688-1696.
  1. 25.   Evaluation of Multiplexed Cytokine and Inflammation Marker Measurements: a Methodologic Study
  2. Chaturvedi, A. K.; Kemp, T. J.; Pfeiffer, R. M.; Biancotto, A.; Williams, M.; Munuo, S.; Purdue, M. P.; Hsing, A. W.; Pinto, L.; McCoy, J. P.; Hildesheim, A.
  3. Cancer Epidemiology Biomarkers & Prevention. 2011, Sep; 20(9): 1902-1911.
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