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  1. 1.   Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement
  2. Tuncbag, N.; Keskin, O.; Nussinov, R.; Gursoy, A.
  3. Proteins-Structure Function and Bioinformatics. 2012, Apr; 80(4): 1239-1249.
  1. 2.   Structural mimicry of CD4 by a cross-reactive HIV-1 neutralizing antibody with CDR-H2 and H3 containing unique motifs
  2. Prabakaran, P.; Gan, J. H.; Wu, Y. Q.; Zhang, M. Y.; Dimitrov, D. S.; Ji, X. H.
  3. Journal of Molecular Biology. 2006, MAR 17; 357(1): 82-99.
  1. 3.   Transcriptomic analysis of an in vitro murine model of ovarian carcinoma: Functional similarity to the human disease and identification of prospective tumoral markers and targets
  2. Urzua, U.; Roby, K. F.; Gangi, L. M.; Cherry, J. M.; Powell, J. I.; Munroe, D. J.
  3. Journal of Cellular Physiology. 2006, MAR; 206(3): 594-602.
  1. 4.   Evaluating chemical structure similarity as an indicator of cellular growth inhibition
  2. Wallqvist, A.; Huang, R. L.; Thanki, N.; Covell, D. G.
  3. Journal of Chemical Information and Modeling. 2006, JAN-FEB; 46(1): 430-437.
  1. 5.   Gene expression profiles of serous, endometrioid, and clear cell subtypes of ovarian and endometrial cancer
  2. Zorn, K. K.; Bonome, T.; Gangi, L.; Chandramouli, G. V. R.; Awtrey, C. S.; Gardner, G. J.; Barrett, J. C.; Boyd, J.; Birrer, M. J.
  3. Clinical Cancer Research. 2005, SEP 15; 11(18): 6422-6430.
  1. 6.   Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach
  2. Keskin, O.; Ma, B. Y.; Rogale, K.; Gunasekaran, K.; Nussinov, R.
  3. Physical Biology. 2005, JUN; 2(2): S24-S35.
  1. 7.   Crystal structure of the protease-resistant core domain of Yersinia pestis virulence factor YopR
  2. Schubot, F. D.; Cherry, S.; Austin, B. P.; Tropea, J. E.; Waugh, D. S.
  3. Protein Science. 2005, JUN; 14(6): 1679-1683.
  1. 8.   p53 is a suppressor of inflammatory response in mice
  2. Komarova, E. A.; Krivokrysenko, V.; Wang, K. H.; Neznanov, N.; Chernov, M. V.; Komarov, P. G.; Brennan, M. L.; Golovkina, T. V.; Rokhlin, O.; Kuprash, D. V.; Nedospasov, S. A.; Hazen, S. R.; Feinstein, E.; Gudkov, A. V.
  3. Faseb Journal. 2005, APR; 19(6): Published online April 5, 2005.
  1. 9.   Recognition of binding patterns common to a set of protein structures
  2. Shatsky, M.; Shulman-Peleg, A.; Nussinov, R.; Wolfson, H. J.
  3. Research in Computational Molecular Biology, Proceedings. 2005 3500: 440-455.
  1. 10.   MAPPIS: Multiple 3D alignment of protein-protein interfaces
  2. Shulman-Peleg, A.; Shatsky, M.; Nussinov, R.; Wolfson, H. J.
  3. Computational Life Sciences. 2005; 3695 : 91-103.
  1. 11.   Anticancer metal compounds in NCI's tumor-screening database: putative mode of action
  2. Huang, R. L.; Wallqvist, A.; Covell, D. G.
  3. Biochemical Pharmacology. 2005 69(7): 1009-1039.
  1. 12.   Evolution of the ATP-binding cassette (ABC) transporter superfamily in vertebrates
  2. Dean, M.; Annilo, T.
  3. Annual review of genomics and human genetics. 2005 6: 123-142.
  1. 13.   Release factors eRF1 and RF2 - A universal mechanism controls the large conformational changes
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2004, DEC 17; 279(51): 53875-53885.
  1. 14.   Identification of the Escherichia coli K-12 ybhE gene as pgl, encoding 6-phosphogluconolactonase
  2. Thomason, L. C.; Court, D. L.; Datta, A. R.; Khanna, R.; Rosner, J. L.
  3. Journal of Bacteriology. 2004, DEC; 186(24): 8248-8253.
  1. 15.   Development and characterization of microsatellite loci in the endangered oyster mussel Epioblasma capsaeformis (Bivalvia : Unionidae)
  2. Jones, J. W.; Culver, M.; David, V.; Struthers, J.; Johnson, N. A.; Neves, R. J.; O'Brien, S. J.; Hallerman, E. M.
  3. Molecular Ecology Notes. 2004, DEC; 4(4): 649-652.
  1. 16.   Murine T cells potently restrict human immunodeficiency virus infection
  2. Baumann, J. G.; Unutmaz, D.; Miller, M. D.; Breun, S. K. J.; Grill, S. M.; Mirro, J.; Littman, D. R.; Rein, A.; KewalRamani, V. N.
  3. Journal of Virology. 2004, NOV; 78(22): 12537-12547.
  1. 17.   A structural similarity analysis of double-helical DNA
  2. Gardiner, E. J.; Hunter, C. A.; Lu, X. J.; Willett, P.
  3. Journal of Molecular Biology. 2004, OCT 29; 343(4): 879-889.
  1. 18.   In silico protein design by combinatorial assembly of protein building blocks
  2. Tsai, H. H.; Tsai, C. J.; Ma, B. Y.; Nussinov, R.
  3. Protein Science. 2004, OCT; 13(10): 2753-2765.
  1. 19.   Functional characterization of the candidate tumor suppressor gene NPRL2/G21 located in 3p21.3C
  2. Li, F.; Wang, F.; Haraldson, K.; Protopopov, A.; Duh, F. M.; Geil, L.; Kuzmin, I.; Minna, J. D.; Stanbridge, E.; Braga, E.; Kashuba, V. I.; Klein, G.; Lerman, M. I.; Zabarovsky, E. R.
  3. Cancer Research. 2004, SEP 15; 64(18): 6438-6443.
  1. 20.   Predictive values of traditional animal bioassay studies for human perinatal carcinogenesis risk determination
  2. Anderson, L. M.
  3. Toxicology and Applied Pharmacology. 2004, SEP 1; 199(2): 162-174.
  1. 21.   Protein-protein interfaces: Recognition of similar spatial and chemical organizations
  2. Shulman-Peleg, A.; Mintz, S.; Nussinov, R.; Wolfson, H. J.
  3. Algorithms in Bioinformatics, Proceedings. 2004 3240: 194-205.
  1. 22.   A model of the ACE2 structure and function as a SARS-CoV receptor
  2. Prabakaran, P.; Mao, X. D.; Dimitrov, D. S.
  3. Biochemical and Biophysical Research Communications. 2004 314(1): 235-241.
  1. 23.   Late domain-dependent inhibition of equine infectious anemia virus budding
  2. Miranda, S. X.; Ablan, S.; Demirov, D. G.; Chen, C. P.; Montelaro, R. C.; Freed, E. O.
  3. Journal of Virology. 2004 78(2): 724-732.
  1. 24.   Prostate pathology of genetically engineered mice: Definitions and classification. The consensus report from the bar harbor meeting of the mouse models of human cancer consortium prostate pathology committee
  2. Shappell, S. B.; Thomas, G. V.; Roberts, R. L.; Herbert, R.; Ittmann, M. M.; Rubin, M. A.; Humphrey, P. A.; Sundberg, J. P.; Rozengurt, N.; Barrios, R.; Ward, J. M.; Cardiff, R. D.
  3. Cancer Research. 2004 64(6): 2270-2305.
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