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  1. 1.   How to recover from a bad start: adaptation of HIV-1 transcription start site mutants during serial passaging in culture
  2. Nikolaitchik,Olga; Chameettachal,Akhil; Islam,Mohammad Saiful; Keele,Brandon; Delviks-Frankenberry, Krista; Pathak,Vinay; Hu,Wei-Shau; Cheng,Zetao
  3. Journal of Virology. 2025, May 07; e0015925.
  1. 2.   Elements in the 5' Untranslated Region of Viral RNA Important for HIV Gag Recognition and Cross-Packaging
  2. Cheng,Zetao; Nikolaitchik,Olga; Duchon,Alice; Rawson, Jonathan M O; Pathak,Vinay; Hu,Wei-Shau
  3. Viruses. 2025, Apr 10; 17(4): 551.
  1. 3.   ERK Allosteric Activation: The Importance of Two Ordered Phosphorylation Events
  2. Regev,Clil; Jang,Hyunbum; Nussinov,Ruth
  3. Journal of Molecular Biology. 2025, Apr 09; 169130.
  1. 4.   Structural basis for complement receptor engagement and virus neutralization through Epstein-Barr virus gp350
  2. Joyce, M Gordon; Bu, Wei; Chen, Wei-Hung; Gillespie, Rebecca A; Andrews, Sarah F; Wheatley, Adam K; Tsybovsky,Yaroslav; Jensen, Jaime L; Stephens,Tyler; Prabhakaran, Madhu; Fisher, Brian E; Narpala, Sandeep R; Bagchi, Meghna; McDermott, Adrian B; Nabel, Gary J; Kwong, Peter D; Mascola, John R; Cohen, Jeffrey I; Kanekiyo, Masaru
  3. Immunity. 2025, Feb 11; 58(2): 295-308.e5. .
  1. 5.   Design, Synthesis and Biological Evaluation of 2-Phenyl Indole Analogues of OXi8006 as Colchicine Site Inhibitors of Tubulin Polymerization and Vascular Disrupting Agents
  2. Vairin, Rebecca; Tamminga, Caleb; Shi, Zhe; Borchardt, Christian; Jambulapati, Jayaram; Bai, Ruoli; Wanniarachchi, Hashini; Bueno, Lorena; Hamel,Ernest; Mason, Ralph P; Trawick, Mary Lynn; Pinney, Kevin G
  3. Bioorganic & Medicinal Chemistry. 2024, Nov 07; 118: 117981.
  1. 6.   Translation of HIV-1 unspliced RNA is regulated by 5' untranslated region structure
  2. Cheng,Zetao; Islam,Mohammad Saiful; Kanlong, Joseph G; Sheppard, Madeline; Seo, Heewon; Nikolaitchik,Olga; Kearse, Michael G; Pathak,Vinay; Musier-Forsyth, Karin; Hu,Wei-Shau
  3. Journal of Virology. 2024, Sep 24; e0116024.
  1. 7.   Genomic profiles and clinical presentation of chordoma
  2. Koka, Hela; Zhou,Weiyin; McMaster, Mary L; Bai, Jiwei; Luo,Wen; Klein, Alyssa; Zhang, Tongwu; Hua,Xing; Li, Xin; Wang,Difei; Xiong, Yujia; Jones,Kristine; Vogt,Aurelie; Hicks,Belynda; Parry, Dilys; Goldstein, Alisa M; Yang, Xiaohong R
  3. Acta Neuropathologica Communications. 2024, Aug 12; 12(1): 129.
  1. 8.   Protective human monoclonal antibodies target conserved sites of vulnerability on the underside of influenza virus neuraminidase
  2. Lederhofer, Julia; Tsybovsky,Yaroslav; Nguyen, Lam; Raab, Julie E; Creanga, Adrian; Stephens,Tyler; Gillespie, Rebecca A; Syeda, Hubza Z; Fisher, Brian E; Skertic, Michelle; Yap, Christina; Schaub, Andrew J; Rawi, Reda; Kwong, Peter D; Graham, Barney S; McDermott, Adrian B; Andrews, Sarah F; King, Neil P; Kanekiyo, Masaru
  3. Immunity. 2024, Mar 12; 57(3): 574-586.e7.
  1. 9.   Inhibition of Plasmodium falciparum plasmepsins by drugs targeting HIV-1 protease: A way forward for antimalarial drug discovery
  2. Mishra, Vandana; Deshmukh, Anuradha; Rathore, Ishan; Chakraborty, Satadru; Patankar, Swati; Gustchina,Alla; Wlodawer,Alexander; Yada, Rickey Y; Bhaumik, Prasenjit
  3. Current Research in Structural Biology. 2024, Jan 17; 7: 100128.
  1. 10.   The P-Site Loop of the Universally Conserved Bacterial Ribosomal Protein L5 Is Required for Maintaining Both Translation Rate and Fidelity
  2. Bubunenko,Mikhail; Korepanov, Alexey P
  3. International Journal of Molecular Sciences. 2023, Sep 19; 24(18):
  1. 11.   HIV-1 neutralizing antibodies elicited in humans by a prefusion-stabilized envelope trimer form a reproducible class targeting fusion peptide
  2. Wang, Shuishu; Matassoli, Flavio; Zhang, Baoshan; Liu, Tracy; Shen, Chen-Hsiang; Bylund, Tatsiana; Johnston, Timothy; Henry, Amy R; Teng, I-Ting; Tripathi, Prabhanshu; Becker, Jordan E; Changela, Anita; Chaudhary, Ridhi; Cheng, Cheng; Gaudinski, Martin; Gorman, Jason; Harris, Darcy R; Lee, Myungjin; Morano, Nicholas C; Novik, Laura; O'Dell, Sijy; Olia, Adam S; Parchment, Danealle K; Rawi, Reda; Roberts-Torres, Jesmine; Stephens,Tyler; Tsybovsky,Yaroslav; Wang, Danyi; Van Wazer, David J; Zhou, Tongqing; Doria-Rose, Nicole A; Koup, Richard A; Shapiro, Lawrence; Douek, Daniel C; McDermott, Adrian B; Kwong, Peter D
  3. Cell Reports. 2023, Jul 10; 42(7): 112755.
  1. 12.   HIV-1 usurps transcription start site heterogeneity of host RNA polymerase II to maximize replication fitness
  2. Nikolaitchik,Olga; Islam,Mohammad Saiful; Kitzrow,Jonathan; Duchon,Alice; Cheng,Zetao; Liu, Yang; Rawson, Jonathan M O; Shao,Wei; Nikolaitchik, Maria; Kearney,Mary; Maldarelli,Frank; Musier-Forsyth, Karin; Pathak,Vinay; Hu,Wei-Shau
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jun 06; 120(23): e2305103120.
  1. 13.   Simple monocyclic pyrimidine analogs as microtubule targeting agents binding to the colchicine site
  2. Choudhary, Shruti; Kaku, Krishna; Robles, Andrew J; Hamel,Ernest; Mooberry, Susan L; Gangjee, Aleem
  3. Bioorganic & Medicinal Chemistry. 2023, Feb 24; 82: 117217.
  1. 14.   Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy
  2. Lian, Xiaodong; Seiger, Kyra W; Parsons, Elizabeth M; Gao, Ce; Sun, Weiwei; Gladkov, Gregory T; Roseto, Isabelle C; Einkauf, Kevin B; Osborn, Matthew R; Chevalier, Joshua M; Jiang, Chenyang; Blackmer, Jane; Carrington,Mary; Rosenberg, Eric S; Lederman, Michael M; McMahon, Deborah K; Bosch, Ronald J; Jacobson, Jeffrey M; Gandhi, Rajesh T; Peluso, Michael J; Chun, Tae-Wook; Deeks, Steven G; Yu, Xu G; Lichterfeld, Mathias
  3. Cell Host & Microbe. 2022, Dec 28; 31
  1. 15.   Epstein-Barr virus gH/gL has multiple sites of vulnerability for virus neutralization and fusion inhibition
  2. Chen, Wei-Hung; Kim, JungHyun; Bu, Wei; Board, Nathan L; Tsybovsky,Yaroslav; Wang,Yanmei; Hostal, Anna; Andrews, Sarah F; Gillespie, Rebecca A; Choe, Misook; Stephens, Tyler; Yang, Eun Sung; Pegu, Amarendra; Peterson, Caroline E; Fisher, Brian E; Mascola, John R; Pittaluga, Stefania; McDermott, Adrian B; Kanekiyo, Masaru; Joyce, M Gordon; Cohen, Jeffrey I
  3. Immunity. 2022, Nov 8; 55(11): 2135-2148.
  1. 16.   Structural basis for cell type specific DNA binding of C/EBPß: the case of cell cycle inhibitor p15INK4b promoter
  2. Lountos, George T; Cherry, Scott; Tropea, Joseph E; Wlodawer, Alexander; Miller, Maria
  3. Journal of Structural Biology. 2022, Nov 04; 214(4): 107918.
  1. 17.   The E. coli L-asparaginase V27T mutant: structural and functional characterization and comparison with theoretical predictions
  2. Strzelczyk, Pawel; Zhang,Di; Wlodawer,Alexander; Lubkowski,Jacek
  3. FEBS Letters. 2022, Oct 30; 596(23): 3060-3068.
  1. 18.   Development of [1,2]oxazoloisoindoles tubulin polymerization inhibitors: Further chemical modifications and potential therapeutic effects against lymphomas
  2. Barreca, Marilia; Spanò, Virginia; Rocca, Roberta; Bivacqua, Roberta; Abel, Anne-Catherine; Maruca, Annalisa; Montalbano, Alessandra; Raimondi, Maria Valeria; Tarantelli, Chiara; Gaudio, Eugenio; Cascione, Luciano; Rinaldi, Andrea; Bai,Ruoli; Steinmetz, Michel O; Prota, Andrea E; Alcaro, Stefano; Hamel, Ernest; Bertoni, Francesco; Barraja, Paola
  3. European Journal of Medicinal Chemistry. 2022, Sep 08; 243: 114744.
  1. 19.   Design, Synthesis and Biological Investigation of 2-Anilino Triazolopyrimidines as Tubulin Polymerization Inhibitors with Anticancer Activities
  2. Romagnoli, Romeo; Oliva, Paola; Prencipe, Filippo; Manfredini, Stefano; Budassi, Federica; Brancale, Andrea; Ferla, Salvatore; Hamel,Ernest; Corallo, Diana; Aveic, Sanja; Manfreda, Lorenzo; Mariotto, Elena; Bortolozzi, Roberta; Viola, Giampietro
  3. Pharmaceuticals (Basel, Switzerland). 2022, Aug 21; 15(8):
  1. 20.   Transcription Start Site Heterogeneity and Preferential Packaging of Specific Full-Length RNA Species Are Conserved Features of Primate Lentiviruses
  2. Rawson, Jonathan M O; Nikolaitchik,Olga; Shakya,Saurabh; Keele,Brandon; Pathak,Vinay; Hu,Wei-Shau
  3. Microbiology Spectrum. 2022, Jun 23; e0105322.
  1. 21.   Deep Sequencing Analysis of Individual HIV-1 Proviruses Reveals Frequent Asymmetric Long Terminal Repeats
  2. Joseph, Kevin W; Halvas, Elias K; Brandt, Leah D; Patro,Sean; Rausch,Jason; Chopra, Abha; Mallal, Simon; Kearney,Mary; Coffin, John M; Mellors, John W
  3. Journal of Virology. 2022, Jun 08; e0012222.
  1. 22.   Structures of plasmepsin X from P. falciparum reveal a novel inactivation mechanism of the zymogen and molecular basis for binding of inhibitors in mature enzyme
  2. Kesari, Pooja; Deshmukh, Anuradha; Pahelkar, Nikhil; Suryawanshi, Abhishek B; Rathore, Ishan; Mishra, Vandana; Dupuis, John H; Xiao, Huogen; Gustchina,Alla; Abendroth, Jan; Labaied, Mehdi; Yada, Rickey Y; Wlodawer, Alexander; Edwards, Thomas E; Lorimer, Donald D; Bhaumik, Prasenjit
  3. Protein Science : a Publication of the Protein Society. 2022, Jan 20;
  1. 23.   Design, Synthesis, and Biological Evaluation of 5,6,7,8-Tetrahydrobenzo[4,5]thieno[2,3-d]pyrimidines as Microtubule Targeting Agents
  2. Islam, Farhana; Doshi, Arpit; Robles, Andrew J; Quadery, Tasdique M; Zhang, Xin; Zhou, Xilin; Hamel, Ernest; Mooberry, Susan L; Gangjee, Aleem
  3. Molecules . 2022, Jan 05; 27(1):
  1. 24.   Selective packaging of HIV-1 RNA genome is guided by the stability of 5 ' untranslated region polyA stem
  2. Nikolaitchik,Olga; Liu, Shuohui; Kitzrow, Jonathan P.; Liu, Yang; Rawson, Jonathan M. O.; Shakya, Saurabh; Cheng, Zetao; Pathak, Vinay K.; Hu, Wei-Shau; Musier-Forsyth, Karin
  3. Proceedings of the National Academy of Sciences of the United States of America . 2021, Dec 14; 118(50):
  1. 25.   Show your cap or be packaged into HIV-1
  2. Levin, Judith G.; Rein, Alan
  3. Proceedings of the National Academy of Sciences of The United States of America. 2021, Oct 5; 118(40):
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