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  1. 1.   ERK Allosteric Activation: The Importance of Two Ordered Phosphorylation Events
  2. Regev,Clil; Jang,Hyunbum; Nussinov,Ruth
  3. Journal of Molecular Biology. 2025, Apr 09; 169130.
  1. 2.   Demographics, epidemiology, mortality and difficult-to-treat resistance patterns of bacterial bloodstream infections in the global US Military Health System from 2010 to 2019: a retrospective cohort study
  2. Vostal, Alexander C; Grance, Melissa; Powers,John; Kadri, Sameer S; Warner, Sarah; Chukwuma, Uzo; Morales, Carlos; Lanteri, Charlotte; Carson, M Leigh; Poitras, Beth; Seliga, Nicholas; Follmann, Dean; Wang,Jing; Parmelee, Edward; Mende, Katrin
  3. BMJ Open. 2025, Mar 03; 15(3): e094861.
  1. 3.   SIV monoclonal antibody administration spanning treatment interruption in macaques delays viral rebound and selects escape variants
  2. King, Hannah A D; Brammer, Daniel; Lewitus, Eric; Fennessey,Christine; Manalang, Kimberly M; Shrader, Hannah R; Andrew, Shayne; Kuri, Phillip; Lind, Matthew; Pham, Phuc; Sanders-Buell, Eric; Bai, Hongjun; Mason, Rosemarie; Song, Kaimei; McCarthy, Elizabeth; Helmold Hait, Sabrina; Todd, John-Paul; Pegu, Amarendra; Foulds, Kathryn E; Lifson,Jeffrey; Keele,Brandon; Rolland, Morgane; Roederer, Mario; Bolton, Diane L
  3. Proceedings of the National Academy of Sciences of the United States of America. 2025, Feb 04; 122(5): e2404767122.
  1. 4.   Tissue-Specific DNA Methylation Changes in CD8+ T Cells During Chronic Simian Immunodeficiency Virus Infection of Infant Rhesus Macaques
  2. Nag,Mukta; Fogle, Jonathan E; Pillay, Santhoshan; Del Prete,Greg; De Paris, Kristina
  3. Viruses. 2024, Nov 27; 16(12):
  1. 5.   SARS-CoV-2 RNA and nucleocapsid antigen are blood biomarkers associated with severe disease outcomes that improve in response to remdesivir
  2. Singh, Kanal; Rubenstein,Kevin; Callier,Viviane; Shaw-Saliba, Katy; Rupert,Adam; Dewar,Robin; Laverdure,Sylvain; Highbarger,Helene; Lallemand,Perrine; Huang, Meei-Li; Jerome, Keith R; Sampoleo, Reigran; Mills, Margaret G; Greninger, Alexander L; Juneja, Kavita; Porter, Danielle; Benson, Constance A; Dempsey, Walla; El Sahly, Hana M; Focht, Chris; Jilg, Nikolaus; Paules, Catharine I; Rapaka, Rekha R; Uyeki, Timothy M; Lane, H Clifford; Beigel, John; Dodd, Lori E
  3. The Journal of Infectious Diseases. 2024, Sep 23; 230(3): 624-634.
  1. 6.   The Impact of SIV-Induced Immunodeficiency on SARS-CoV-2 Disease, Viral Dynamics, and Antiviral Immune Response in a Nonhuman Primate Model of Coinfection
  2. Melton, Alexandra; Rowe, Lori A; Penney, Toni; Krzykwa, Clara; Goff, Kelly; Scheuermann, Sarah E; Melton, Hunter J; Williams, Kelsey; Golden, Nadia; Green, Kristyn Moore; Smith, Brandon; Russell-Lodrigue, Kasi; Dufour, Jason P; Doyle-Meyers, Lara A; Schiro, Faith; Aye, Pyone P; Lifson,Jeffrey; Beddingfield, Brandon J; Blair, Robert V; Bohm, Rudolf P; Kolls, Jay K; Rappaport, Jay; Hoxie, James A; Maness, Nicholas J
  3. Viruses. 2024, Jul 21; 16(7):
  1. 7.   Viral escape mutations do not account for non-protection from SIVmac239 challenge in RhCMV/SIV vaccinated rhesus macaques
  2. Bimber, Benjamin N; Sunshine, Justine; McElfresh, G W; Reed, Jason S; Pathak, Reese; Bateman, Katherine B; Hughes, Colette M; Gilbride, Roxanne M; Ford, Julia C; Morrow, David; Lifson,Jeffrey; Sacha, Jonah B; Hansen, Scott G; Picker, Louis J
  3. Frontiers in Immunology. 2024 15: 1444621.
  1. 8.   Acute-phase innate immune responses in SIVmac239-infected Mamu-B*08+ Indian rhesus macaques may contribute to the establishment of elite control
  2. Rosen, Brandon C; Sawatzki, Kaitlin; Ricciardi, Michael J; Smith, Elise; Golez, Inah; Mauter, Jack T; Pedreño-López, Núria; Yrizarry-Medina, Aaron; Weisgrau, Kim L; Vosler, Logan J; Voigt, Thomas B; Louw, Johan J; Tisoncik-Go, Jennifer; Whitmore, Leanne S; Panayiotou, Christakis; Ghosh, Noor; Furlott, Jessica R; Parks, Christopher L; Desrosiers, Ronald C; Lifson,Jeffrey; Rakasz, Eva G; Watkins, David I; Gale, Michael
  3. Frontiers in Immunology. 2024 15: 1478063.
  1. 9.   In Vivo Treatment with Insulin-like Growth Factor 1 Reduces CCR5 Expression on Vaccine-Induced Activated CD4+ T-Cells
  2. Bissa, Massimiliano; Galli, Veronica; Schifanella, Luca; Vaccari, Monica; Rahman, Mohammad Arif; Gorini, Giacomo; Binello, Nicolò; Sarkis, Sarkis; Gutowska, Anna; Silva de Castro, Isabela; Doster, Melvin N; Moles, Ramona; Ferrari, Guido; Shen, Xiaoying; Tomaras, Georgia D; Montefiori, David C; N'guessan, Kombo F; Paquin-Proulx, Dominic; Kozlowski, Pamela A; Venzon, David J; Choo-Wosoba, Hyoyoung; Breed,Matthew; Kramer,Josh; Franchini, Genoveffa
  3. Vaccines. 2023, Oct 30; 11(11):
  1. 10.   Reactive Oxygen Species-Sensitive Biodegradable Mesoporous Silica Nanoparticles Harboring TheraVac Elicit Tumor-Specific Immunity for Colon Tumor Treatment
  2. Huang,Yue; Nahar, Saifun; Alam, Md Masud; Hu, Shuo; McVicar,Dan; Yang,De
  3. ACS Nano. 2023, Oct 13;
  1. 11.   Viral dissemination and immune activation modulate antiretroviral drug levels in lymph nodes of SIV-infected rhesus macaques
  2. Srinivasula,Sharat; Degrange, Paula; Perazzolo, Simone; Bonvillain, Andrew; Tobery, Amanda; Kaplan, Jacob; Jang, Hyukjin; Turnier, Refika; Davies, Michael; Cottrell, Mackenzie; Ho, Rodney J Y; Di Mascio, Michele
  3. Frontiers in Immunology. 2023, Sep 18; 14: 1213455.
  1. 12.   Cancer stem cells as the source of tumor associated myoepithelial cells in the tumor microenvironment developing ductal carcinoma in situ
  2. Afify, Said M; Hassan, Ghmkin; Zahra, Maram H; Nawara, Hend M; Abu Quora, Hagar A; Osman, Amira; Mansour, Hager; Kumon, Kazuki; Seno, Akimasa; Chen, Ling; Satoh, Ayano; Salomon,David; Seno, Masaharu
  3. Biomaterials. 2023, Jul 20; 301: 122249.
  1. 13.   Lymph-Node-Based CD3+ CD20+ Cells Emerge from Membrane Exchange between T Follicular Helper Cells and B Cells and Increase Their Frequency following Simian Immunodeficiency Virus Infection
  2. Samer, Sadia; Chowdhury, Ankita; Wiche Salinas, Tomas Raul; Estrada, Perla M Del Rio; Reuter, Morgan; Tharp, Gregory; Bosinger, Steven; Cervasi, Barbara; Auger, James; Gill, Kiran; Ablanedo-Terrazas, Yuria; Reyes-Teran, Gustavo; Estes, Jacob D; Betts, Michael R; Silvestri, Guido; Paiardini, Mirko
  3. Journal of Virology. 2023, May 23; e0176022.
  1. 14.   Enhanced immune complex formation in the lungs of patients with dermatomyositis
  2. Zaizen, Yoshiaki; Okamoto, Masaki; Azuma, Koichi; Fukuoka, Junya; Hozumi, Hironao; Sakamoto, Noriho; Suda, Takafumi; Mukae, Hiroshi; Hoshino,Tomoaki
  3. Respiratory Research. 2023, Mar 19; 24(1): 86.
  1. 15.   Experimental bacterial dysbiosis with consequent immune alterations increase intrarectal SIV acquisition susceptibility
  2. Ortiz, Alexandra M; Baker, Phillip J; Langner, Charlotte A; Simpson, Jennifer; Stacy, Apollo; Flynn, Jacob K; Starke, Carly E; Vinton, Carol L; Fennessey,Christine; Belkaid, Yasmine; Keele,Brandon; Brenchley, Jason M
  3. Cell Reports. 2023, Jan 31; 42(1): 112020.
  1. 16.   Natural Killer Cells Regulate Acute SIV Replication, Dissemination, and Inflammation, but Do Not Impact Independent Transmission Events
  2. Woolley, Griffin; Mosher, Matthew; Kroll, Kyle; Jones, Rhianna; Hueber, Brady; Sugawara, Sho; Manickam, Cordelia; Terry, Karen; Varner, Valerie; Lifton, Michelle; Ram, Daniel; Fennessey,Christine; Keele,Brandon; Reeves, R Keith
  3. Journal of Virology. 2022, Dec 13; e0151922.
  1. 17.   Single-cell sequencing reveals activation of core transcription factors in PRC2-deficient malignant peripheral nerve sheath tumor
  2. Zhang, Xiyuan; Lou, Hannah E; Gopalan, Vishaka; Liu, Zhihui; Jafarah, Hilda M; Lei, Haiyan; Jones, Paige; Sayers, Carly M; Yohe, Marielle E; Chittiboina, Prashant; Widemann, Brigitte C; Thiele, Carol J; Kelly,Michael; Hannenhalli, Sridhar; Shern, Jack F
  3. Cell Reports. 2022, Sep 20; 40(12): 111363.
  1. 18.   Quantitative PET imaging of the CD4 pool in nonhuman primates
  2. Kim,Insook; Srinivasula,Sharat; DeGrange, Paula; Long, Brad; Jang,Hyukjin; Carrasquillo, Jorge A; Lane, H Clifford; Di Mascio, Michele
  3. European Journal of Nuclear Medicine and Molecular Imaging. 2022, Aug 27;
  1. 19.   ADGRL1 haploinsufficiency causes a variable spectrum of neurodevelopmental disorders in humans and alters synaptic activity and behavior in a mouse model
  2. Vitobello, Antonio; Mazel, Benoit; Lelianova, Vera G; Zangrandi, Alice; Petitto, Evelina; Suckling, Jason; Salpietro, Vincenzo; Meyer, Robert; Elbracht, Miriam; Kurth, Ingo; Eggermann, Thomas; Benlaouer, Ouafa; Lall, Gurprit; Tonevitsky, Alexander G; Scott, Daryl A; Chan, Katie M; Rosenfeld, Jill A; Nambot, Sophie; Safraou, Hana; Bruel, Ange-Line; Denommé-Pichon, Anne-Sophie; Tran Mau-Them, Frédéric; Philippe, Christophe; Duffourd, Yannis; Guo, Hui; Petersen, Andrea K; Granger, Leslie; Crunk, Amy; Bayat, Allan; Striano, Pasquale; Zara, Federico; Scala, Marcello; Thomas, Quentin; Delahaye, Andrée; de Sainte Agathe, Jean-Madeleine; Buratti, Julien; Kozlov,Serguei; Faivre, Laurence; Thauvin-Robinet, Christel; Ushkaryov, Yuri
  3. American Journal of Human Genetics. 2022, Jul 29; 109(8): 1436-1457..
  1. 20.   IKKa-deficient lung adenocarcinomas generate an immunosuppressive microenvironment by overproducing Treg-inducing cytokines
  2. Song, Na-Young; Li,Xin; Ma, Buyong; Willette-Brown, Jami; Zhu,Feng; Jiang, Chengfei; Su,Ling; Shetty,Jyoti; Zhao,Yongmei; Shi,Gongping; Banerjee, Sayantan; Wu,Xiaolin; Tran,Bao; Nussinov,Ruth; Karin, Michael; Hu,Yinling
  3. Proceedings of the National Academy of Sciences of the United States of America. 2022, Feb 08; 119(6): e2120956119.
  1. 21.   Machine learning-driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins
  2. Ingólfsson, Helgi I; Neale, Chris; Carpenter, Timothy S; Shrestha,Rebika; López, Cesar A; Tran, Timothy H; Oppelstrup, Tomas; Bhatia, Harsh; Stanton, Liam G; Zhang, Xiaohua; Sundram, Shiv; Di Natale, Francesco; Agarwal, Animesh; Dharuman, Gautham; Kokkila Schumacher, Sara I L; Turbyville,Tommy; Gulten, Gulcin; Van, Que N; Goswami, Debanjan; Jean-Francois, Frantz; Agamasu, Constance; Chen, De; Hettige, Jeevapani J; Travers, Timothy; Sarkar, Sumantra; Surh, Michael P; Yang, Yue; Moody, Adam; Liu, Shusen; Van Essen, Brian C; Voter, Arthur F; Ramanathan, Arvind; Hengartner, Nicolas W; Simanshu, Dhirendra K; Stephen, Andrew G; Bremer, Peer-Timo; Gnanakaran, S; Glosli, James N; Lightstone, Felice C; McCormick, Frank; Nissley, Dwight V; Streitz, Frederick H
  3. Proceedings of the National Academy of Sciences of the United States of America. 2022, Jan 04; 119(1):
  1. 22.   Hematologically important mutations: The autosomal forms of chronic granulomatous disease (third update)
  2. Roos, Dirk; van Leeuwen, Karin; Hsu, Amy P.; Long-Priel,Debra; Begtrup, Amber; Brandon, Rhonda; Rawat, Amit; Vignesh, Pandiarajan; Madkaikar, Manesha; Stasia, Marie Jose; Bakri, Faris Ghalib; de Boer, Martin; Roesler, Joachim; Koker, Nezihe; Koker, M. Yavuz; Jakobsen, Marianne; Bustamante, Jacinta; Bravo Garcia-Morato, Maria; Valdivieso Shephard, Juan Luis; Cagdas, Deniz; Tezcan, Ilhan; Sherkat, Roya; Mortaz, Esmaeil; Fayezi, Abbas; Shahrooei, Mohammad; Wolach, Baruch; Blancas-Galicia, Lizbeth; Kanegane, Hirokazu; Kawai, Toshinao; Condino-Neto, Antonio; Vihinen, Mauno; Zerbe, Christa S.; Holland, Steven M.; Malech, Harry L.; Gallin, John; Kuhns,Doug
  3. Blood cells, molecules & diseases. 2021, Dec; 92
  1. 23.   Remdesivir for the prevention of invasive mechanical ventilation or death in COVID-19 - A post-hoc analysis of the Adaptive COVID-19 Treatment Trial-1 Cohort Data
  2. Paules, Catharine I; Gallagher, Shannon K; Rapaka, Rekha R; Davey, Richard T; Doernberg, Sarah B; Grossberg, Robert; Hynes, Noreen A; Ponce, Philip; Short, William R; Voell, Jocelyn; Wang,Jing; Yang, Otto O; Wolfe, Cameron R; Lye, David C; Dodd, Lori E; Benson, Constance A
  3. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2021, Aug 11;
  1. 24.   Targeted Deep Sequencing of Bladder Tumors Reveals Novel Associations between Cancer Gene Mutations and Mutational Signatures with Major Risk Factors
  2. Koutros, Stella; Rao, Nina; Moore, Lee E.; Nickerson, Michael L.; Lee, Donghyuk; Zhu, Bin; Pardo, Larissa A.; Baris, Dalsu; Schwenn, Molly; Johnson, Alison; Jones,Kristine; Garcia-Closas, Montserrat; Prokunina-Olsson, Ludmila; Silverman, Debra T.; Rothman, Nathaniel; Dean,Michael
  3. CLINICAL CANCER RESEARCH. 2021, Jul; 27(13): 3725-3733.
  1. 25.   Ultrasensitive detection and quantification of viral nucleic acids with raindance droplet digital PCR (ddPCR)
  2. Long, Samuel; Berkemeier,Brian
  3. Methods (San Diego, Calif.). 2021, May 03; 201: 49-64.
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