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  1. 1.   Solvent organization in the ultrahigh-resolution crystal structure of crambin at room temperature
  2. Chen, Julian C H; Gilski, Miroslaw; Chang, Changsoo; Borek, Dominika; Rosenbaum, Gerd; Lavens, Alex; Otwinowski, Zbyszek; Kubicki, Maciej; Dauter, Zbigniew; Jaskolski, Mariusz; Joachimiak, Andrzej
  3. IUCrJ. 2024, Sep 01; 11(Pt 5): 649-663.
  1. 2.   Polymorphic Triple beta-Sheet Structures Contribute to Amide Hydrogen/Deuterium (H/D) Exchange Protection in the Alzheimer Amyloid beta 42 Peptide
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2011, Sep; 286(39): 34244-34253.
  1. 3.   Genetic Variation in Metabolic Genes, Occupational Solvent Exposure, and Risk of Non-Hodgkin Lymphoma
  2. Barry, K. H.; Zhang, Y. W.; Lan, Q.; Zahm, S. H.; Holford, T. R.; Leaderer, B.; Boyle, P.; Hosgood, H. D.; Chanock, S.; Yeager, M.; Rothman, N.; Zheng, T. Z.
  3. American Journal of Epidemiology. 2011, Feb; 173(4): 404-413.
  1. 4.   Polymorphic C-terminal beta-Sheet Interactions Determine the Formation of Fibril or Amyloid beta-derived Diffusible Ligand-like Globulomer for the Alzheimer A beta 42 Dodecamer
  2. Ma, B. Y.; Nussinov, R.
  3. Journal of Biological Chemistry. 2010, Nov; 285(47): 37102-37110.
  1. 5.   Enantioselective biocatalytic reactions on (+/-)-aryl alkyl ketones with native and modified porcine pancreatic lipase
  2. Husain, M.; Kumar, V.; Kumar, R.; Shakil, N. A.; Sharma, S. K.; Prasad, A. K.; Olsen, C. E.; Gupta, R. K.; Malhotra, S. V.; Van Der Eycken, E.; Depass, A. L.; Levon, K.; Parmar, V. S.
  3. Biocatalysis and Biotransformation. 2010, Jun; 28(3): 172-184.
  1. 6.   Overcoming Problems of Compound Storage in DMSO: Solvent and Process Alternatives
  2. Waybright, T. J.; Britt, J. R.; McCloud, T. G.
  3. Journal of Biomolecular Screening. 2009 14(6): 708-715.
  1. 7.   Influence of the Dye Presence on the Conformational Preferences of CREKA, a Tumor Homing Linear Pentapeptide
  2. Zanuy, D.; Curco, D.; Nussinov, R.; Aleman, C.
  3. Biopolymers. 2009 92(2): 83-93.
  1. 8.   Synthesis and applications of novel bis(ammonium) chiral ionic liquids derived from isomannide
  2. Kumar, V.; Olsen, C. E.; Schaffer, S. J. C.; Parmar, V. S.; Malhotra, S. V.
  3. Organic Letters. 2007, Sep; 9(20): 3905-3908.
  1. 9.   The impact of dyskeratosis congenita mutations on the structure and dynamics of the human telomerase RNA pseudoknot domain
  2. Yingling, Y. G.; Shapiro, B. A.
  3. Journal of Biomolecular Structure & Dynamics. 2007, Feb; 24(4): 303-319.
  1. 10.   Identification of the intrinsic conformational properties of 1-aminocyclobutane-1-carboxylic acid
  2. Casanovas, J.; Zanuy, D.; Nussinov, R.; Aleman, C.
  3. Chemical Physics Letters. 2006, Oct; 429(4-6): 558-562.
  1. 11.   The prediction of the wild-type telomerase RNA pseudoknot structure and the pivotal role of the bulge in its formation
  2. Yingling, Y. G.; Shapiro, B. A.
  3. Journal of Molecular Graphics & Modelling. 2006, Oct; 25(2): 261-274.
  1. 12.   Structure and dynamics of micelle-associated human immunodeficiency virus gp41 fusion domain
  2. Jaroniec, C. P.; Kaufman, J. D.; Stahl, S. J.; Viard, M.; Blumenthal, R.; Wingfield, P. T.; Bax, A.
  3. Biochemistry. 2005, DEC 13; 44(49): 16167-16180.
  1. 13.   Isolation and characterization of novel cyclotides from Viola hederaceae - Solution structure and anti-HIV activity of vhl-1, a leaf-specific expressed cyclotide
  2. Chen, B.; Colgrave, M. L.; Daly, N. L.; Rosengren, K. J.; Gustafson, K. R.; Craik, D. J.
  3. Journal of Biological Chemistry. 2005, JUN 10; 280(23): 22395-22405.
  1. 14.   Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach
  2. Keskin, O.; Ma, B. Y.; Rogale, K.; Gunasekaran, K.; Nussinov, R.
  3. Physical Biology. 2005, JUN; 2(2): S24-S35.
  1. 15.   Dynamic behavior of the telomerase RNA hairpin structure and its relationship to dyskeratosis congenita
  2. Yingling, Y. G.; Shapiro, B. A.
  3. Journal of Molecular Biology. 2005, APR 22; 348(1): 27-42.
  1. 16.   Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces
  2. Li, Y. L.; Huang, Y. P.; Swaminathan, C. P.; Smith-Gill, S. J.; Mariuzza, R. A.
  3. Structure. 2005, FEB; 13(2): 297-307.
  1. 17.   Protein-protein interactions: Hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: Implications for docking
  2. Li, X.; Keskin, O.; Ma, B. Y.; Nussinov, R.; Liang, J.
  3. Journal of Molecular Biology. 2004, NOV 26; 344(3): 781-795.
  1. 18.   Structure and dynamics of the surfactant molecules in dodecyltrimethylammonium center dot poly(alpha,L-glutamate) self-assembled complexes
  2. Zanuy, D.; Casanovas, J.; Aleman, C.
  3. Chemical Physics. 2004, OCT 25; 305(1-3): 85-93.
  1. 19.   A novel antimicrobial indolizinium alkaloid from Aniba panurensis
  2. Klausmeyer, P.; Chmurny, G. N.; McCloud, T. G.; Tucker, K. D.; Shoemaker, R. H.
  3. Journal of Natural Products. 2004, OCT; 67(10): 1732-1735.
  1. 20.   (Salen)Mn(III) compound as a nonpeptidyl mimic of catalase: DFT study of the metal oxidation by a peroxide molecule
  2. Abashkin, Y. G.; Burt, S. K.
  3. Journal of Physical Chemistry B. 2004 108(8): 2708-2711.
  1. 21.   Organic solvent extraction of proteins and peptides from serum as an effective sample preparation for detection and identification of biomarkers by mass spectrometry
  2. Chertov, O.; Biragyn, A.; Kwak, L. W.; Simpson, J. T.; Boronina, T.; Hoang, V. M.; Prieto, D. A.; Conrads, T. P.; Veenstra, T. D.; Fisher, R. J.
  3. Proteomics. 2004 4(4): 1195-1203.
  1. 22.   Modulating functional loop movements: The role of highly conserved residues in the correlated loop motions
  2. Gunasekaran, K.; Nussinov, R.
  3. Chembiochem. 2004 5(2): 224-230.
  1. 23.   Ultrahigh resolution drug design I: Details of interactions in human aldose reductase-inhibitor complex at 0.66 angstrom
  2. Howard, E. I.; Sanishvili, R.; Cachau, R. E.; Mitschler, A.; Chevrier, B.; Barth, P.; Lamour, V.; Van Zandt, M.; Sibley, E.; Bon, C.; Moras, D.; Schneider, T. R.; Joachimiak, A.; Podjarny, A.
  3. Proteins-Structure Function and Bioinformatics. 2004 55(4): 792-804.
  1. 24.   Effect of polymer concentration on partitioning and molecular recognition in plasticized poly(vinyl chloride)
  2. Zhang, X.; Zhao, H.; Chen, Z.; Nims, R.; Weber, S. G.
  3. Analytical Chemistry. 2003 75(16): 4257-4264.
  1. 25.   Binding interactions between the core central domain of 16S rRNA and the ribosomal protein S15 determined by molecular dynamics simulations
  2. Li, W.; Ma, B. Y.; Shapiro, B. A.
  3. Nucleic Acids Research. 2003 31(2): 629-638.
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