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  1. 1.   Modulation of the Substrate Preference of a MYST Acetyltransferase by a Scaffold Protein
  2. Sengupta, Raghuvir N; Brodsky, Oleg; Bingham, Patrick; Diehl, Wade C; Ferre, RoseAnn; Greasley, Samantha E; Johnson, Eric; Kraus, Michelle; Lieberman, Whitney; Meier,Jordan; Paul, Thomas A; Maegley, Karen A
  3. The Journal of Biological Chemistry. 2025, Feb 03; 108262.
  1. 2.   Effects of Xylanase A double mutation on substrate specificity and structural dynamics
  2. MacDonald, Meagan E; Wells, Nicholas G M; Hassan,Bakar; Dudley, Joshua A; Walters,Kylie; Korzhnev, Dmitry M; Aramini, James M; Smith, Colin A
  3. Journal of Structural Biology. 2024, Mar 02; 108082.
  1. 3.   Revealing KRas4b topology on the membrane surface
  2. Shree, Shweta; McLean, Mark A; Stephen,Andy; Sligar, Stephen G
  3. Biochemical and Biophysical Research Communications. 2023, Oct 20; 678: 122-127.
  1. 4.   Massively parallel reporter assays and variant scoring identified functional variants and target genes for melanoma loci and highlighted cell-type specificity
  2. Long, Erping; Yin, Jinhu; Funderburk, Karen M; Xu, Mai; Feng, James; Kane, Alexander; Zhang, Tongwu; Myers, Timothy; Golden, Alyxandra; Thakur, Rohit; Kong, Hyunkyung; Jessop, Lea; Kim, Eun Young; Jones, Kristine; Chari,Raj; Machiela, Mitchell J; Yu, Kai; Iles, Mark M; Landi, Maria Teresa; Law, Matthew H; Chanock, Stephen J; Brown, Kevin M; Choi, Jiyeon
  3. American Journal of Human Genetics. 2022, Nov 18;
  1. 5.   Structural basis for cell type specific DNA binding of C/EBPß: the case of cell cycle inhibitor p15INK4b promoter
  2. Lountos, George T; Cherry, Scott; Tropea, Joseph E; Wlodawer, Alexander; Miller, Maria
  3. Journal of Structural Biology. 2022, Nov 04; 214(4): 107918.
  1. 6.   Application of CHyMErA Cas9-Cas12a combinatorial genome-editing platform for genetic interaction mapping and gene fragment deletion screening
  2. Aregger,Michael; Xing, Kun; Gonatopoulos Pournatzis,Thomas
  3. Nature Protocols . 2021, Sep 10; 16(10): 4722-4765.
  1. 7.   Specificity of the HIV-1 Protease on Substrates Representing the Cleavage Site in the Proximal Zinc-Finger of HIV-1 Nucleocapsid Protein
  2. Motyan, Janos Andras; Miczi, Mario; Oroszlan, Stephen; Tozser, Jozsef
  3. Viruses. 2021, Jun; 13(6):
  1. 8.   Covalent Small Molecule Immunomodulators Targeting the Protease Active Site
  2. Kim,Hong-Rae; Tagirasa,Ravichandra; Yoo,Euna
  3. Journal of medicinal chemistry. 2021, May 13; 64(9): 5291-5322.
  1. 9.   A new precision medicine initiative at the dawn of exascale computing
  2. Nussinov,Ruth; Jang,Hyunbum; Nir, Guy; Tsai,Chung-Jung; Cheng, Feixiong
  3. Signal transduction and targeted therapy. 2021, Jan 6; 6(1):
  1. 10.   dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data
  2. Ou, Jianhong; Liu, Haibo; Nirala, Niraj K.; Stukalov, Alexey; Acharya,Usha; Green, Michael R.; Zhu, Lihua Julie
  3. PLOS ONE. 2020, NOV 6; 15(11):
  1. 11.   Specificity Studies of the Venezuelan Equine Encephalitis Virus Non-Structural Protein 2 Protease Using Recombinant Fluorescent Substrates
  2. Bozóki, Beáta; Mótyán, János András; Hoffka, Gyula; Waugh,David; Tozsér, József
  3. International journal of molecular sciences. 2020, Oct 16; 21(20): pii: E7686.
  1. 12.   Generalized enzymatic mechanism of catalysis by tetrameric L-asparaginases from mesophilic bacteria
  2. Strzelczyk,Pawel; Zhang,Di; Dyba,Marzena; Wlodawer,Alexander; Lubkowski,Jacek
  3. SCIENTIFIC REPORTS. 2020, OCT 15; 10(1):
  1. 13.   The frequency of Ras mutations in cancer
  2. Prior, Ian A; Hood, Fiona E; Hartley,Jim
  3. Cancer research. 2020, JUL 15; 80(14): 2969-2974.
  1. 14.   Are Parallel Proliferation Pathways Redundant?
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. Trends in biochemical sciences. 2020, Jul; 45(7): 554-563.
  1. 15.   Ras assemblies and signaling at the membrane
  2. Nussinov,Ruth; Tsai,Chung-Jung; Jang,Hyunbum
  3. Current opinion in structural biology. 2020, JUN; 62: 140-148.
  1. 16.   Mechanism of Catalysis by L-Asparaginase
  2. Lubkowski,Jacek; Vanegas, Juan Manuel; Chan, Wai-Kin; Lorenzi, Philip L.; Weinstein, John N.; Sukharev, Sergei; Fushman, David; Rempe, Susan B.; Anishkin, Andriy; Wlodawer,Alexander
  3. BIOCHEMISTRY. 2020, MAY 26; 59(20): 1927-1945.
  1. 17.   IgG3 enhances neutralization potency and Fc effector function of an HIV V2-specific broadly neutralizing antibody
  2. Richardson, Simone I; Lambson, Bronwen E; Crowley, Andrew R; Bashirova,Arman; Scheepers, Cathrine; Garrett, Nigel; Abdool Karim, Salim; Mkhize, Nonhlanhla N; Carrington,Mary; Ackerman, Margaret E; Moore, Penny L; Morris, Lynn
  3. PLoS pathogens. 2019, Dec 16; 15(12): e1008064.
  1. 18.   Inhibition of HIV Maturation via Selective Unfolding and Cross-Linking of Gag Polyprotein by a Mercaptobenzamide Acetylator
  2. Jenkins, Lisa M. Miller; Paine, Elliott L.; Deshmukh, Lalit; Nikolayevskiy, Herman; Lyons, Gaelyn C.; Scerba, Michael T.; Rosenker, Kara George; Luecke, Hans F.; Louis, John M.; Chertova,Elena; Gorelick,Robert; Ott,David; Clore, G. Marius; Appella, Daniel H.
  3. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2019, MAY 22; 141(20): 8327-8338.
  1. 19.   Structural basis of phosphatidylcholine recognition by the C2-domain of cytosolic phospholipase A(2)alpha
  2. Hirano, Yoshinori; Gao, Yong-Guang; Stephenson, Daniel J.; Vu, Ngoc T.; Malinina, Lucy; Simanshu,Dhirendra; Chalfant, Charles E.; Patel, Dinshaw J.; Brown, Rhoderick E.
  3. ELIFE. 2019, MAY 3; 8
  1. 20.   A Nonaggregating Heptamethine Cyanine for Building Brighter Labeled Biomolecules
  2. Luciano,Michael; Crooke, Stephen N.; Nourian, Saghar; Dingle,Ivan; Nani, Roger R.; Kline, Gabriel; Patel,Nimit; Robinson,Christina; Difilippantonio,Simone; Kalen,Joseph; Finn, M. G.; Schnermann,Martin
  3. ACS chemical biology. 2019, MAY; 14(5): 934-940.
  1. 21.   Development of a Multiplex Glycan Microarray Assay and Comparative Analysis of Human Serum Anti-Glycan IgA, IgG, and IgM Repertoires
  2. Durbin, Sarah V.; Wright, W. Shea; Gildersleeve, Jeffrey
  3. ACS omega. 2018, Dec 31; 3(12): 16882-16891.
  1. 22.   Allosteric activation of RAF in the MAPK signaling pathway
  2. Tsai,Chung-Jung; Nussinov,Ruth
  3. CURRENT OPINION IN STRUCTURAL BIOLOGY. 2018, Dec; 53: 100-106.
  1. 23.   Structural insights into the mechanism of double strand break formation by Hermes, a hAT family eukaryotic DNA transposase
  2. Hickman, Alison B.; Voth, Andrea; Ewis, Hosam; Li, Xianghong; Craig, Nancy L.; Dyda, Fred
  3. NUCLEIC ACIDS RESEARCH. 2018, NOV 2; 46(19): 10286-10301.
  1. 24.   MBP-binding DARPins facilitate the crystallization of an MBP fusion protein
  2. Gumpena, Rajesh; Lountos, George; Waugh, David
  3. Acta Crystallographica. Section F, Structural Biology Communications. 2018, Sep 01; 74(Pt 9): 549-557.
  1. 25.   A new HIV-1 Rev structure optimizes interaction with target RNA (RRE) for nuclear export
  2. Watts, Norman R; Eren, Elif; Zhuang, Xiaolei; Wang, Yun-Xing; Steven, Alasdair C; Wingfield, Paul T
  3. Journal of Structural Biology. 2018, Aug; 203(2): 102-108.
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