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  1. 1.   RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases
  2. Zhang,Di; Czapinska, Honorata; Bochtler, Matthias; Wlodawer,Alexander; Lubkowski,Jacek
  3. Protein Science : a publication of the Protein Society. 2024, Apr; 33(4): e4920.
  1. 2.   Inhibition of Plasmodium falciparum plasmepsins by drugs targeting HIV-1 protease: A way forward for antimalarial drug discovery
  2. Mishra, Vandana; Deshmukh, Anuradha; Rathore, Ishan; Chakraborty, Satadru; Patankar, Swati; Gustchina,Alla; Wlodawer,Alexander; Yada, Rickey Y; Bhaumik, Prasenjit
  3. Current Research in Structural Biology. 2024, Jan 17; 7: 100128.
  1. 3.   Deep Sequencing Analysis of Individual HIV-1 Proviruses Reveals Frequent Asymmetric Long Terminal Repeats
  2. Joseph, Kevin W; Halvas, Elias K; Brandt, Leah D; Patro,Sean; Rausch,Jason; Chopra, Abha; Mallal, Simon; Kearney,Mary; Coffin, John M; Mellors, John W
  3. Journal of Virology. 2022, Jun 08; e0012222.
  1. 4.   Structural and biochemical properties of L-asparaginase
  2. Lubkowski,Jacek; Wlodawer,Alexander
  3. The FEBS journal. 2021, Jun 19;
  1. 5.   Protein crystallography: alive and well
  2. Wlodawer,Alexander
  3. The FEBS journal. 2021, Mar; 288(20): 5786-5787.
  1. 6.   Use of human peripheral blood mononuclear cells to define immunological properties of nucleic acid nanoparticles
  2. Dobrovolskaia,Marina; Afonin, Kirill A
  3. Nature protocols. 2020, Oct 23; 15(11): 3678-3698.
  1. 7.   Understanding the solid-state emission of a trio of 1,4-diaryl-1,3-butadiynes in terms of their molecular structure and crystal packing interactions
  2. San Angelo, Michael; Khago, Domarin; Choi, Brandon; Fronczek, Frank R.; Isovitsch, Ralph
  3. JOURNAL OF MOLECULAR STRUCTURE. 2019, FEB 5; 1177: 9-15.
  1. 8.   Deciphering the mechanism of potent peptidomimetic inhibitors targeting Plasmepsins: Biochemical and structural insights
  2. Mishra, Vandana; Rathore, Ishan; Arekar, Anagha; Sthanam, Lakshmi Kavitha; Xiao, Huogen; Kiso, Yoshiaki; Sen, Shamik; Patankar, Swati; Gustchina, Alla; Hidaka, Koushi; Wlodawer, Alexander; Yada, Rickey Y; Bhaumik, Prasenjit
  3. FEBS Journal. 2018, Aug; 285(16): 3077-3096.
  1. 9.   Fluorous Phase-Directed Peptide Assembly Affords Nano-Peptisomes Capable of Ultrasound-Triggered Cellular Delivery
  2. Medina, Scott H; Michie, Megan S; Miller, Stephen; Schnermann, Martin; Schneider, Joel
  3. Angewandte Chemie (International ed. in English). 2017, Sep 11; 56(38): 11404-11408.
  1. 10.   A Protocol for the Design of Protein and Peptide Nanostructure Self-Assemblies Exploiting Synthetic Amino Acids.
  2. Haspel, Nurit; Zheng, Jie; Aleman, Carlos; Zanuy, David; Nussinov, Ruth
  3. Methods in molecular biology (Clifton, N.J.). 2017 1529: 323-352.
  1. 11.   Structure of the cytoplasmic domain of Yersinia pestis YscD, an essential component of the type III secretion system
  2. Lountos, G. T.; Tropea, J. E.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2012, Mar; 68: 201-209.
  1. 12.   Structural studies of vacuolar plasmepsins
  2. Bhaumik, P.; Gustchina, A.; Wlodawer, A.
  3. Biochimica Et Biophysica Acta-Proteins and Proteomics. 2012, Jan; 1824(1): 207-223.
  1. 13.   Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine
  2. Afonin, K. A.; Grabow, W. W.; Walker, F. M.; Bindewald, E.; Dobrovolskaia, M. A.; Shapiro, B. A.; Jaeger, L.
  3. Nature Protocols. 2011, Dec; 6(12): 2022-2034.
  1. 14.   Structural Insights into the Activation and Inhibition of Histo-Aspartic Protease from Plasmodium falciparum
  2. Bhaumik, P.; Xiao, H. G.; Hidaka, K.; Gustchina, A.; Kiso, Y.; Yada, R. Y.; Wlodawer, A.
  3. Biochemistry. 2011, Oct; 50(41): 8862-8879.
  1. 15.   Correlating SHAPE signatures with three-dimensional RNA structures
  2. Bindewald, E.; Wendeler, M.; Legiewicz, M.; Bona, M. K.; Wang, Y.; Pritt, M. J.; Le Grice, S. F. J.; Shapiro, B. A.
  3. Rna-a Publication of the Rna Society. 2011, Sep; 17(9): 1688-1696.
  1. 16.   Isothiazolidinone (IZD) as a phosphoryl mimetic in inhibitors of the Yersinia pestis protein tyrosine phosphatase YopH
  2. Kim, S. E.; Bahta, M.; Lountos, G. T.; Ulrich, R. G.; Burke, T. R.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2011, Jul; 67: 639-645.
  1. 17.   Crystal structures of the free and inhibited forms of plasmepsin I (PMI) from Plasmodium falciparum
  2. Bhaumik, P.; Horimoto, Y.; Xiao, H. G.; Miura, T.; Hidaka, K.; Kiso, Y.; Wlodawer, A.; Yada, R. Y.; Gustchina, A.
  3. Journal of Structural Biology. 2011, Jul; 175(1): 73-84.
  1. 18.   Materials from peptide assembly: towards the treatment of cancer and transmittable disease
  2. Branco, M. C.; Sigano, D. M.; Schneider, J. P.
  3. Current Opinion in Chemical Biology. 2011, Jun; 15(3): 427-434.
  1. 19.   Blocking premature reverse transcription fails to rescue the HIV-1 nucleocapsid-mutant replication defect
  2. Thomas, J. A.; Shatzer, T. L.; Gorelick, R. J.
  3. Retrovirology. 2011, Jun; 8: 14.
  1. 20.   Structure of human dual-specificity phosphatase 27 at 2.38 angstrom resolution
  2. Lountos, G. T.; Tropea, J. E.; Waugh, D. S.
  3. Acta Crystallographica Section D-Biological Crystallography. 2011, May; 67: 471-479.
  1. 21.   Symmetry-Based Self-assembled Nanotubes Constructed Using Native Protein Structures: The Key Role of Flexible Linkers
  2. Buch, I.; Tsai, C. J.; Wolfson, H. J.; Nussinov, R.
  3. Protein and Peptide Letters. 2011, Apr; 18(4): 362-372.
  1. 22.   Self-Assembling RNA Nanorings Based on RNAI/II Inverse Kissing Complexes
  2. Grabow, W. W.; Zakrevsky, P.; Afonin, K. A.; Chworos, A.; Shapiro, B. A.; Jaeger, L.
  3. Nano Letters. 2011, Feb; 11(2): 878-887.
  1. 23.   Structural determinants of tobacco vein mottling virus protease substrate specificity
  2. Sun, P.; Austin, B. P.; Tozser, J.; Waugh, D. S.
  3. Protein Science. 2010, Nov; 19(11): 2240-2251.
  1. 24.   Fundamental differences between the nucleic acid chaperone activities of HIV-1 nucleocapsid protein and Gag or Gag-derived proteins: Biological implications
  2. Wu, T. Y.; Datta, S. A. K.; Mitra, M.; Gorelick, R. J.; Rein, A.; Levin, J. G.
  3. Virology. 2010, Sep; 405(2): 556-567.
  1. 25.   In vitro assembly of cubic RNA-based scaffolds designed in silico
  2. Afonin, K. A.; Bindewald, E.; Yaghoubian, A. J.; Voss, N.; Jacovetty, E.; Shapiro, B. A.; Jaeger, L.
  3. Nature Nanotechnology. 2010, Sep; 5(9): 676-682.
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