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  1. 1.   Revealing the mechanism of action of a first-in-class covalent inhibitor of KRASG12C (ON) and other functional properties of oncogenic KRAS by 31P NMR
  2. Sharma,Alok; Pei, Jun; Yang, Yue; Dyba,Marcin; Smith,Brian; Rabara,Dana; Larsen,Erik; Lightstone, Felice C; Esposito,Dom; Stephen,Andy; Wang, Bin; Beltran, Pedro J; Wallace, Eli; Nissley,Dwight; McCormick, Frank; Maciag,Anna
  3. The Journal of Biological Chemistry. 2024, Jan 16; 300(2): 105650.
  1. 2.   Investigating the NRAS 5' UTR as a target for small molecules
  2. Balaratnam,Sumirtha; Torrey, Zachary R; Calabrese,Dave; Banco, Michael T; Yazdani, Kamyar; Liang, Xiao; Fullenkamp,Chris; Seshadri,Sri; Holewinski,Ronald; Andresson,Thorkell; Ferré-D'Amaré, Adrian R; Incarnato, Danny; Schneekloth,Jay
  3. Cell Chemical Biology. 2023, Jun 15; 30(6): 643-657.e8.
  1. 3.   Machine Learning Informs RNA-Binding Chemical Space
  2. Yazdani, Kamyar; Jordan, Deondre; Yang,Mo; Fullenkamp,Chris; Schneekloth,Jay; Calabrese,Dave; Boer, Robert E; Hilimire, Thomas A; Allen, Timothy E H; Khan, Rabia T
  3. Angewandte Chemie (International ed. in English). 2022, Dec 30;
  1. 4.   Structural insights of the conserved "priming loop" of hepatitis B virus pre-genomic RNA
  2. LeBlanc, Regan M; Kasprzak,Wojciech; Longhini, Andrew P; Olenginski, Lukasz T; Abulwerdi, Fardokht; Ginocchio, Stefano; Shields, Brigit; Nyman, Julie; Svirydava, Maryia; Del Vecchio, Claudia; Ivanic,Joseph; Schneekloth,Jay; Shapiro, Bruce A; Dayie, Theodore Kwaku; Le Grice,Stuart
  3. Journal of Biomolecular Structure & Dynamics. 2022, Jun 22; 40(20): 9761-9773.
  1. 5.   Inhibition of Nonfunctional Ras
  2. Nussinov,Ruth; Jang, Hyunbum; Gursoy, Attila; Keskin, Ozlem; Gaponenko, Vadim
  3. Cell Chemical Biology. 2021, Feb 18; 28(2): 121-133.
  1. 6.   Three-Color Imaging Enables Simultaneous Screening of Multiple RNA Targets on Small Molecule Microarrays
  2. Jordan,Deondre; Yang,Mo; Schneekloth,Jay
  3. Current protocols in chemical biology. 2020, Dec; 12(4): e87.
  1. 7.   Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design
  2. Tran, Brandon; Pichling, Patricio; Tenney, Logan; Connelly, Colleen M; Moon, Michelle H; Ferré-D'Amaré, Adrian R; Schneekloth,Jay; Jones, Christopher P
  3. Cell chemical biology. 2020, OCT 15; 27(10): 1241-+.
  1. 8.   Creating and screening natural product libraries
  2. Wilson,Brice; Thornburg,Chris; Henrich,Curtis; Grkovic,Tanja; O'Keefe,Barry
  3. Natural product reports. 2020, JUL 1; 37: 893-918.
  1. 9.   Allosteric p97 inhibitors can overcome resistance to ATP-competitive p97 inhibitors for potential anti-cancer therapy
  2. Wang, Feng; Li, Shan; Gan, Taiping; Stott,Gordon; Flint,Andrew; Chou, Tsui-Fen
  3. ChemMedChem. 2020, APR 20; 15(8): 685-694.
  1. 10.   Using SHAPE-MaP to probe small molecule-RNA interactions
  2. Martin, Sarah; Blankenship, Carson; Rausch,Jason; Sztuba-Solinska, Joanna
  3. Methods (San Diego, Calif.). 2019, SEP 1; 167: 105-116.
  1. 11.   Second harmonic generation detection of Ras conformational changes and discovery of a small molecule binder
  2. Donohue, Elizabeth; Khorsand, Sina; Mercado, Gabriel; Varney, Kristen M; Wilder, Paul T; Yu, Wenbo; MacKerell, Alexander D; Alexander,Patrick; Van,Que; Moree, Ben; Stephen,Andy; Weber, David J; Salafsky, Joshua; McCormick, Frank
  3. Proceedings of the National Academy of Sciences of the United States of America. 2019, Aug 27; 116(35): 17290-17297.
  1. 12.   Evidence for ligandable sites in structured RNA throughout the Protein Data Bank
  2. Hewitt, William M.; Calabrese,Dave; Schneekloth,Jay
  3. BIOORGANIC & MEDICINAL CHEMISTRY. 2019, Jun 1; 27(11): 2253-2260.
  1. 13.   Targeting Non-coding RNA Sensitizes Cancer Cells to Drugs
  2. Yang,Mo; Schneekloth,Jay
  3. Trends in pharmacological sciences. 2019, May 20; pii: S0165-6147(19)30094-X.
  1. 14.   Measuring RNA-Ligand Interactions with Microscale Thermophoresis
  2. Moon, Michelle H.; Hilimire, Thomas A.; Sanders, Allix M.; Schneekloth, Jay
  3. BIOCHEMISTRY. 2018, Aug 7; 57(31): 4638-4643.
  1. 15.   Unequivocal determination of caulamidines A and B: application and validation of new tools in the structure elucidation tool box
  2. Milanowski, Dennis J.; Oku, Naoya; Cartner, Laura; Bokesch, Heidi; Williamson, R. Thomas; Sauri, Josep; Liu, Yizhou; Blinov, Kirill A.; Ding, Yuanqing; Li, Xing-Cong; Ferreira, Daneel; Walker, Larry A.; Khan, Shabana; Davies-Coleman, Michael T.; Kelley, Jim; McMahon, James B.; Martin, Gary E.; Gustafson, Kirk
  3. Chemical Science. 2018, Jan 14; 9(2): 307-314.
  1. 16.   Recent Advances in Targeting the HIV-1 Tat/TAR Complex
  2. Abulwerdi, Fardokht; Legrice, Stuart
  3. Current pharmaceutical design. 2017, Jun 15; 23(28): 4112-4121.
  1. 17.   Discovery of RNA Binding Small Molecules Using Small Molecule Microarrays
  2. Connelly, Colleen; Abulwerdi, Fardokht; Schneekloth, Jay
  3. Methods in Molecular Biology. 2017 1518: 157-175.
  1. 18.   High-throughput single-molecule screen for small-molecule perturbation of splicing and transcription kinetics
  2. Day, C. R.; Chen, H.; Coulon, A.; Meier, J. L.; Larson, D. R.
  3. Methods (San Diego, Calif.). 2016, 1-Mar; 96: 59-68.
  1. 19.   Evolution-Based Design of an Injectable Hydrogel
  2. Geisler, I. M.; Schneider, J. P.
  3. Advanced Functional Materials. 2012, Feb; 22(3): 529-537.
  1. 20.   Small molecule inhibitors of ezrin inhibit the invasive phenotype of osteosarcoma cells
  2. Bulut, G.; Hong, S. H.; Chen, K.; Beauchamp, E. M.; Rahim, S.; Kosturko, G. W.; Glasgow, E.; Dakshanamurthy, S.; Lee, H. S.; Daar, I.; Toretsky, J. A.; Khanna, C.; Uren, A.
  3. Oncogene. 2012, Jan; 31(3): 269-281.
  1. 21.   Quantitative Analysis of Phospholipids Using Nanostructured Laser Desorption Ionization Targets
  2. Colantonio, S.; Simpson, J. T.; Fisher, R. J.; Yavlovich, A.; Belanger, J. M.; Puri, A.; Blumenthal, R.
  3. Lipids. 2011, May; 46(5): 469-477.
  1. 22.   Pharmacophore Refinement Guides the Design of Nanomolar-Range Botulinum Neurotoxin Serotype A Light Chain Inhibitors
  2. Nuss, J. E.; Dong, Y. X.; Wanner, L. M.; Ruthel, G.; Wipf, P.; Gussio, R.; Vennerstrom, J. L.; Bavari, S.; Burnett, J. C.
  3. Acs Medicinal Chemistry Letters. 2010, Oct; 1(7): 301-305.
  1. 23.   Tautomerism in large databases
  2. Sitzmann, M.; Ihlenfeldt, W. D.; Nicklaus, M. C.
  3. Journal of Computer-Aided Molecular Design. 2010, Jun; 24(6-7): 521-551.
  1. 24.   Mechanisms of transcription factor selectivity
  2. Pan, Y. P.; Tsai, C. J.; Ma, B. Y.; Nussinov, R.
  3. Trends in Genetics. 2010, Feb; 26(2): 75-83.
  1. 25.   Inhibitors of human tyrosyl-DNA phospodiesterase (hTdp1) developed by virtual screening using ligand-based pharmacophores
  2. Weidlich, I. E.; Dexheimer, T.; March, C.; Antony, S.; Pommier, Y.; Nicklaus, M. C.
  3. Bioorganic & Medicinal Chemistry. 2010, Jan; 18(1): 182-189.
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