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  1. 1.   Thermotropic effects of PEGylated lipids on the stability of HPPH-encapsulated lipid nanoparticles (LNP)
  2. Kalyanram, Poornima; Puri,Anu; Gupta, Anju
  3. Journal of thermal analysis and calorimetry. 2021, Jun 26; 1-12.
  1. 2.   Ligand binding to a remote site thermodynamically corrects the F508del mutation in the human cystic fibrosis transmembrane conductance regulator
  2. Wang, Chi; Aleksandrov, Andrei A.; Yang, Zhengrong; Forouhar, Farhad; Proctor, Elizabeth A.; Kota, Pradeep; An, Jianli; Kaplan, Anna; Khazanov, Netaly; Boel, Gregory; Stockwell, Brent R.; Senderowitz, Hanoch; Dokholyan, Nikolay V.; Riordan, John R.; Brouillette, Christie G.; Hunt, John F.
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, NOV 16; 293(46): 17685-17704.
  1. 3.   Conformational energy range of ligands in protein crystal structures: The difficult quest for accurate understanding
  2. Peach, Megan; Cachau, Raul; Nicklaus, Marc
  3. JOURNAL OF MOLECULAR RECOGNITION. 2017, Aug; 30(8):
  1. 4.   Structure and function of RapA: A bacterial Swi2/Snf2 protein required for RNA polymerase recycling in transcription
  2. Jin, D. J.; Zhou, Y. N.; Shaw, G.; Ji, X. H.
  3. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms. 2011, Sep; 1809(9): 470-475.
  1. 5.   In vitro assembly of cubic RNA-based scaffolds designed in silico
  2. Afonin, K. A.; Bindewald, E.; Yaghoubian, A. J.; Voss, N.; Jacovetty, E.; Shapiro, B. A.; Jaeger, L.
  3. Nature Nanotechnology. 2010, Sep; 5(9): 676-682.
  1. 6.   C-terminal Domain Modulates the Nucleic Acid Chaperone Activity of Human T-cell Leukemia Virus Type 1 Nucleocapsid Protein via an Electrostatic Mechanism
  2. Qualley, D. F.; Stewart-Maynard, K. M.; Wang, F.; Mitra, M.; Gorelick, R. J.; Rouzina, I.; Williams, M. C.; Musier-Forsyth, K.
  3. Journal of Biological Chemistry. 2010, Jan; 285(1): 295-307.
  1. 7.   Atomic-Scale Simulations Confirm that Soluble beta-Sheet-Rich Peptide Self-Assemblies Provide Amyloid Mimics Presenting Similar Conformational Properties
  2. Yu, X.; Wang, J. D.; Yang, J. C.; Wang, Q. M.; Cheng, S. Z. D.; Nussinov, R.; Zheng, J.
  3. Biophysical Journal. 2010, Jan; 98(1): 27-36.
  1. 8.   Intra-molecular chaperone: the role of the N-terminal in conformational selection and kinetic control
  2. Tsai, C. J.; Ma, B.; Nussinov, R.
  3. Physical Biology. 2009 6(1): 13001-.
  1. 9.   Architecture and secondary structure of an entire HIV-1 RNA genome
  2. Watts, J. M.; Dang, K. K.; Gorelick, R. J.; Leonard, C. W.; Bess, J. W.; Swanstrom, R.; Burch, C. L.; Weeks, K. M.
  3. Nature. 2009 460(7256): 711-U87.
  1. 10.   Cyclostreptin binds covalently to microtubule pores and lumenal taxoid binding sites
  2. Buey, R. M.; Calvo, E.; Barasoain, I.; Pineda, O.; Edler, M. C.; Matesanz, R.; Cerezo, G.; Vanderwal, C. D.; Day, B. W.; Sorensen, E. J.; Lopez, J. A.; Andreu, J. M.; Hamel, E.; Diaz, J. F.
  3. Nature Chemical Biology. 2007, Feb; 3(2): 117-125.
  1. 11.   Calorimetric investigation of phosphorylated and non-phosphorylated peptide ligand binding to the human Grb7-SH2 domain
  2. Spuches, A. M.; Argiros, H. J.; Lee, K. H.; Haas, L. L.; Perch, S. C.; Krag, D. N.; Roller, P. P.; Wilcox, D. E.; Lyons, B. A.
  3. Journal of Molecular Recognition. 2007, Jul-Aug; 20(4): 245-252.
  1. 12.   Computational study of the fibril organization of polyglutamine repeats reveals a common motif identified in beta-helices
  2. Zanuy, D.; Gunasekaran, K.; Lesk, A. M.; Nussinov, R.
  3. Journal of Molecular Biology. 2006, Apr; 358(1): 330-345.
  1. 13.   RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers
  2. Bindewald, E.; Shapiro, B. A.
  3. Rna-a Publication of the Rna Society. 2006 12(3): 342-352.
  1. 14.   Kinetic stability and crystal structure of the viral capsid protein SHP
  2. Forrer, P.; Chang, C. S.; Ott, D.; Wlodawer, A.; Pluckthun, A.
  3. Journal of Molecular Biology. 2004, NOV 12; 344(1): 179-193.
  1. 15.   Experiment-guided thermodynamic simulations on reversible two-state proteins: implications for protein thermostability
  2. Kumar, S.; Nussinov, R.
  3. Biophysical Chemistry. 2004, NOV 1; 111(3): 235-246.
  1. 16.   Solution structure of the pseudo-5 ' splice site of a retroviral splicing suppressor
  2. Cabello-Villegas, J.; Giles, K. E.; Soto, A. M.; Yu, P.; Mougin, A.; Beemon, K. L.; Wang, Y. X.
  3. Rna-a Publication of the Rna Society. 2004, SEP; 10(9): 1388-1398.
  1. 17.   Discovering well-ordered folding patterns in nucleotide sequences
  2. Le, S. Y.; Chen, J. H.; Konings, D.; Maizel, J. V.
  3. Bioinformatics. 2003 19(3): 354-361.
  1. 18.   Energy landscape and dynamics of the beta-hairpin G peptide and its isomers: Topology and sequences
  2. Ma, B. Y.; Nussinov, R.
  3. Protein Science. 2003 12(9): 1882-1893.
  1. 19.   Multisite and multivalent binding between cyanovirin-N and branched oligomannosides: Calorimetric and NMR characterization
  2. Shenoy, S. R.; Barrientos, L. G.; Ratner, D. M.; O'Keefe, B. R.; Seeberger, P. H.; Gronenborn, A. M.; Boyd, M. R.
  3. Chemistry & Biology. 2002 9(10): 1109-1118.
  1. 20.   Maximal stabilities of reversible two-state proteins
  2. Kumar, S.; Tsai, C. J.; Nussinov, R.
  3. Biochemistry. 2002 41(17): 5359-5374.
  1. 21.   Temperature differentially affects encounter and docking thermodynamics of antibody-antigen association
  2. Lipschultz, C. A.; Yee, A.; Mohan, S.; Li, Y. L.; Smith-Gill, S. J.
  3. Journal of Molecular Recognition. 2002 15(1): 44-52.
  1. 22.   A data mining approach to discover unusual folding regions in genome sequences
  2. Le, S. Y.; Liu, W. M.; Maizel, J. V.
  3. Knowledge-Based Systems. 2002 15(4, Special Issue): 243-250.
  1. 23.   Charge distributions in water and ion-water clusters
  2. Rashin, A. A.; Topol, I. A.; Tawa, G. J.; Burt, S. K.
  3. Chemical Physics Letters. 2001 335(3-4): 327-333.
  1. 24.   Does the interconversion of polysulfur compounds proceed via hypervalent intermediates? - An ab initio MO study
  2. Steudel, R.; Steudel, Y.; Miaskiewicz, K.
  3. Chemistry-a European Journal. 2001 7(15): 3281-3290.
  1. 25.   A systematic study of the vibrational free energies of polypeptides in folded and random states
  2. Ma, B. Y.; Tsai, C. J.; Nussinov, R.
  3. Biophysical Journal. 2000 79(5): 2739-2753.
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