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  1. 1.   ShiftScan: A tool for rapid analysis of high-throughput differential scanning fluorimetry data and compound prioritization
  2. Waterworth, Samantha C; Shenoy, Shilpa R; Sharma, Nirmala D; Wolcott,Chris; Donohue,Duncan; O'Keefe,Barry; Beutler,John
  3. Protein Science : a publication of the Protein Society. 2025, Mar; 34(3): e70055.
  1. 2.   Identification of molecular determinants of gene-specific bursting patterns by high-throughput imaging screens
  2. Sood, Varun; Holewinski,Ronald; Andresson,Thorkell; Larson, Daniel R; Misteli, Tom
  3. Molecular Cell. 2025, Feb 11;
  1. 3.   Protocol for cytoskeleton staining of the semi-adherent multiple myeloma cell line RPMI 8226 by immunofluorescence
  2. Osei Amponsa,Vasty; Magidson,Valentin; Walters,Kylie
  3. STAR Protocols. 2024, May 02; 5(2): 103060.
  1. 4.   Screen for New Antimicrobial Natural Products from the NCI Program for Natural Product Discovery Prefractionated Extract Library
  2. Martínez-Fructuoso, Lucero; Arends, S J Ryan; Freire,Vitor; Evans,Jason; DeVries, Sean; Peyser,Brian; Akee,Rhone; Thornburg,Chris; Kumar,Rohitesh; Ensel,Susan; Morgan, Gina M; McConachie, Grant D; Veeder, Nathan; Duncan, Leonard R; Grkovic,Tanja; O'Keefe,Barry
  3. ACS Infectious Diseases. 2023, May 10;
  1. 5.   Detecting genomic deletions from high-throughput sequence data with unsupervised learning
  2. Li,Xin; Wu, Yufeng
  3. BMC Bioinformatics. 2023, Jan 27; 23(Suppl 8): 568.
  1. 6.   Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis
  2. Han, Hong; Best, Andrew J; Braunschweig, Ulrich; Mikolajewicz, Nicholas; Li, Jack Daiyang; Roth, Jonathan; Chowdhury, Fuad; Mantica, Federica; Nabeel-Shah, Syed; Parada, Guillermo; Brown, Kevin R; O'Hanlon, Dave; Wei, Jiarun; Yao, Yuxi; Zid, Abdelrahman Abou; Comsa, Lim Caden; Jen, Mark; Wang, Jenny; Datti, Alessandro; Gonatopoulos Pournatzis,Thomas; Weatheritt, Robert J; Greenblatt, Jack F; Wrana, Jeffrey L; Irimia, Manuel; Gingras, Anne-Claude; Moffat, Jason; Blencowe, Benjamin J
  3. Molecular Cell. 2022, Jul 31; 82(16): 2982-2999.
  1. 7.   Inhibition of HSP 90 is associated with potent anti-tumor activity in Papillary Renal Cell Carcinoma
  2. Pahwa, Roma; Dubhashi, Janhavi; Singh, Anand; Jailwala, Parthav; Lobanov,Alexei; Thomas, Craig J; Ceribelli, Michele; Wilson, Kelli; Ricketts, Christopher J; Vocke, Cathy D; Wells, Catherine; Bottaro, Donald P; Linehan, W Marston; Neckers, Len; Srinivasan, Ramaprasad
  3. Journal of Experimental & Clinical Cancer Research : CR. 2022, Jun 27; 41(1): 208.
  1. 8.   Dataset of high-throughput ligand screening against the RNA Packaging Signals regulating Hepatitis B Virus nucleocapsid formation
  2. Abulwerdi, Fardokht; Fatehi, Farzad; Manfield, Iain W; Le Grice,Stuart; Schneekloth,Jay; Twarock, Reidun; Stockley, Peter G; Patel, Nikesh
  3. Data in Brief. 2022, Jun; 42: 108206.
  1. 9.   Complex Tumor Spheroids, a Tissue-Mimicking Tumor Model, for Drug Discovery and Precision Medicine
  2. Kaur, Gurmeet; Evans, David M.; Teicher, Beverly A.; Coussens,Nathan
  3. SLAS Discovery. 2021, Nov 12;
  1. 10.   A practical guide to large-scale docking
  2. Bender, Brian J.; Gahbauer, Stefan; Luttens, Andreas; Lyu, Jiankun; Webb, Chase M.; Stein, Reed M.; Fink, Elissa A.; Balius,Trent; Carlsson, Jens; Irwin, John J.; Shoichet, Brian K.
  3. Nature protocols. 2021, Oct; 16(10): 4799-4832.
  1. 11.   In Vitro Ubiquitination Platform Identifies Methyl Ellipticiniums as Ubiquitin Ligase Inhibitors
  2. Wilson,Brice; Voeller, Donna; Smith,Emily; Wamiru,Antony; Goncharova,Katya; Liu, Gang; Lipkowitz, Stanley; O'Keefe,Barry
  3. SLAS DISCOVERY. 2021, Aug 21; 26(7, SI): 870-884.
  1. 12.   Arrow pushing in RNA modification sequencing
  2. Bartee,David; Thalalla Gamage,Supuni; Link,Courtney; Meier,Jordan
  3. Chemical Society reviews. 2021, Jul 14;
  1. 13.   Sensitivity of Oncogenic KRAS-Expressing Cells to CDK9 Inhibition
  2. Lai, Lick Pui; Brel, Viviane; Sharma, Kanika; Frappier, Julia; Le-Henanf, Nadia; Vivet, Bertrand; Muzet, Nicolas; Schell, Emilie; Morales, Renaud; Rooney, Eamonn; Basse, Nicolas; Yi,Ming; Lacroix, Frederic; Holderfield, Matthew; Englaro, Walter; Marcireau, Christophe; Debussche, Laurent; Nissley,Dwight; McCormick, Frank
  3. SLAS DISCOVERY. 2021, Apr 24; 26(7, SI): 922-932.
  1. 14.   A Molecular Networking Strategy: High-Throughput Screening and Chemical Analysis of Brazilian Cerrado Plant Extracts against Cancer Cells
  2. Cortelo, Patricia C.; Demarque, Daniel P.; Dusi, Renata G.; Albernaz, Lorena C.; Braz-Filho, Raimundo; Goncharova, Ekaterina I.; Bokesch, Heidi R.; Gustafson, Kirk R.; Beutler, John A.; Espindola, Laila S.
  3. Cells. 2021, Mar; 10(3):
  1. 15.   Three-Color Imaging Enables Simultaneous Screening of Multiple RNA Targets on Small Molecule Microarrays
  2. Jordan,Deondre; Yang,Mo; Schneekloth,Jay
  3. Current protocols in chemical biology. 2020, Dec; 12(4): e87.
  1. 16.   Identification of Potential Modulators of Osteosarcoma Metastasis by High Throughput Cellular Screening of Natural Products
  2. Long, Sarah A; Huang, Shan; Kambala, Anusha; Ren, Ling; Wilson,Jennifer; Goetz, Michael; Hao, Xiaojiang; Yang, Xiaosheng; Goncharova,Katya; Jia, Libin; LeBlanc, Amy; Khanna, Chand; Henrich,Curtis; Beutler,John
  3. Chemical biology & drug design. 2020, JUL 28;
  1. 17.   IgG3 enhances neutralization potency and Fc effector function of an HIV V2-specific broadly neutralizing antibody
  2. Richardson, Simone I; Lambson, Bronwen E; Crowley, Andrew R; Bashirova,Arman; Scheepers, Cathrine; Garrett, Nigel; Abdool Karim, Salim; Mkhize, Nonhlanhla N; Carrington,Mary; Ackerman, Margaret E; Moore, Penny L; Morris, Lynn
  3. PLoS pathogens. 2019, Dec 16; 15(12): e1008064.
  1. 18.   Physiologically relevant orthogonal assays for the discovery of small-molecule modulators of WIP1 phosphatase in high-throughput screens
  2. Clausse, Victor; Tao, Dingyin; Debnath, Subrata; Fang, Yuhong; Tagad, Harichandra D; Wang, Yuhong; Sun, Hongmao; LeClair, Christopher A; Mazur, Sharlyn J; Lane, Kelly; Shi, Zhen-Dan; Vasalatiy, Olga; Eells, Rebecca; Baker, Lynn K; Henderson, Mark J; Webb, Martin R; Shen, Min; Hall, Matthew D; Appella, Ettore; Appella, Daniel H; Coussens,Nathan
  3. The Journal of biological chemistry. 2019, Nov 15; 294(46): 17654-17668.
  1. 19.   Transcriptional Bursting and Co-bursting Regulation by Steroid Hormone Release Pattern and Transcription Factor Mobility
  2. Stavreva, Diana A; Garcia, David A; Fettweis, Gregory; Gudla, Prabhakar R; Zaki,George; Soni, Vikas; McGowan, Andrew; Williams, Geneva; Huynh, Anh; Palangat, Murali; Schiltz, R Louis; Johnson, Thomas A; Presman, Diego M; Ferguson, Matthew L; Pegoraro, Gianluca; Upadhyaya, Arpita; Hager, Gordon L
  3. Molecular cell. 2019, SEP 19; 75(6): 1161-+.
  1. 20.   Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities
  2. Vasaikar, Suhas; Huang, Chen; Wang, Xiaojing; Petyuk, Vladislav A.; Savage, Sara R.; Wen, Bo; Dou, Yongchao; Zhang, Yun; Shi, Zhiao; Arshad, Osama A.; Gritsenko, Marina A.; Zimmerman, Lisa J.; McDermott, Jason E.; Clauss, Therese R.; Moore, Ronald J.; Zhao, Rui; Monroe, Matthew E.; Wang, Yi-Ting; Chambers, Matthew C.; Slebos, Robbert J. C.; Lau, Ken S.; Mo, Qianxing; Ding, Li; Ellis, Matthew; Thiagarajan,Mathangi; Kinsinger, Christopher R.; Rodriguez, Henry; Smith, Richard D.; Rodland, Karin D.; Liebler, Daniel C.; Liu, Tao; Zhang, Bing; Ellis, Matthew J. C.; Bavarva, Jasmin; Borucki, Melissa; Elburn, Kimberly; Hannick, Linda; Vatanian, Negin; Payne, Samuel H.; Carr, Steven A.; Clauser, Karl R.; Gillette, Michael A.; Kuhn, Eric; Mani, D. R.; Cai, Shuang; Ketchum, Karen A.; Thangudu, Ratna R.; Whiteley, Gordon A.; Paulovich, Amanda; Whiteaker, Jeff; Edward, Nathan J.; Madhavan, Subha; McGarvey, Peter B.; Chan, Daniel W.; Shih, Ie-Ming; Zhang, Hui; Zhang, Zhen; Zhu, Heng; Skates, Steven J.; White, Forest M.; Mertins, Philip; Pandey, Akhilesh; Slebos, Robert J. C.; Boja, Emily; Hiltke, Tara; Kinsinger, Christopher R.; Mesri, Mehdi; Rivers, Robert C.; Stein, Stephen E.; Fenyo, David; Ruggles, Kelly; Levine, Douglas A.; Oberti, Mauricio; Rudnick, Paul A.; Snyder, Michael; Tabb, David L.; Zhao, Yingming; Chen, Xian; Ransohoff, David F.; Hoofnagle, Andrew; Sanders, Melinda E.; Wang, Yue; Davies, Sherri R.; Townsend, R. Reid; Watson, Mark
  3. CELL. 2019, May 2; 177(4): 1035-1049.e19.
  1. 21.   Meeting report: Fourth Summer School on Innovative Approaches for Identification of Antiviral Agents (IAAASS)
  2. Le Grice,Stuart; Maccioni, Elias; Corona, Angela; Parolin, Cristina; Tramontano, Enzo
  3. Antiviral research. 2019, Feb; 162: 110-117.
  1. 22.   Ligand binding to a remote site thermodynamically corrects the F508del mutation in the human cystic fibrosis transmembrane conductance regulator
  2. Wang, Chi; Aleksandrov, Andrei A.; Yang, Zhengrong; Forouhar, Farhad; Proctor, Elizabeth A.; Kota, Pradeep; An, Jianli; Kaplan, Anna; Khazanov, Netaly; Boel, Gregory; Stockwell, Brent R.; Senderowitz, Hanoch; Dokholyan, Nikolay V.; Riordan, John R.; Brouillette, Christie G.; Hunt, John F.
  3. JOURNAL OF BIOLOGICAL CHEMISTRY. 2018, NOV 16; 293(46): 17685-17704.
  1. 23.   Transcriptomic profiling and quantitative high-throughput (qHTS) drug screening of CDH1 deficient hereditary diffuse gastric cancer (HDGC) cells identify treatment leads for familial gastric cancer.
  2. Chen, Ina; Mathews-Greiner, Lesley; Li, Dandan; Abisoye-Ogunniyan, Abisola; Ray, Satyajit; Bian, Yansong; Shukla, Vivek; Zhang, Xiaohu; Guha, Raj; Thomas, Craig; Gryder, Berkley; Zacharia, Athina; Beane, Joal D; Ravichandran, Sarangan; Ferrer, Marc; Rudloff, Udo
  3. Journal of translational medicine. 2017, May 01; 15(1): 92.
  1. 24.   Discovery of RNA Binding Small Molecules Using Small Molecule Microarrays
  2. Connelly, Colleen; Abulwerdi, Fardokht; Schneekloth, Jay
  3. Methods in Molecular Biology. 2017 1518: 157-175.
  1. 25.   High-throughput single-molecule screen for small-molecule perturbation of splicing and transcription kinetics
  2. Day, C. R.; Chen, H.; Coulon, A.; Meier, J. L.; Larson, D. R.
  3. Methods (San Diego, Calif.). 2016, 1-Mar; 96: 59-68.
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