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  1. 1.   Data imbalance in drug response prediction: multi-objective optimization approach in deep learning setting
  2. Narykov, Oleksandr; Zhu, Yitan; Brettin, Thomas; Evrard,Yvonne; Partin, Alexander; Xia, Fangfang; Shukla, Maulik; Vasanthakumari, Priyanka; Doroshow, James H; Stevens, Rick L
  3. Briefings in Bioinformatics. 2025, Mar 04; 26(2):
  1. 2.   Histidine Tag-Specific PEGylation Improves the Circulating Half-Life of TIMP2
  2. Toor, Jack; Grabowska, Wiktoria R; Johnson, Adam L; Jones,Jane; Stetler-Stevenson, William G; Khalili, Hanieh; Peeney, David
  3. ACS Applied Bio Materials. 2025, Feb 21;
  1. 3.   Examining the bias-efficiency tradeoff from incorporation of nonconcurrent controls in platform trials: A simulation study example from the adaptive COVID-19 treatment trial
  2. Bonnett,Tyler; Potter, Gail E; Dodd, Lori E
  3. Clinical Trials (London, England). 2025, Feb 08; 17407745251313928.
  1. 4.   Multi-objective latent space optimization of generative molecular design models
  2. Abeer, A N M Nafiz; Urban, Nathan M; Weil,Michael; Alexander, Francis J; Yoon, Byung-Jun
  3. Patterns (New York, N.Y.). 2024, Oct 11; 5(10): 101042.
  1. 5.   A Multiplexed Real-Time PCR Assay for Simultaneous Quantification of Human Immunodeficiency Virus and Hepatitis B Virus for Low-And-Middle- Income Countries
  2. Bocar, Fofana Djeneba; Aminatou, Coulibaly; Mamoudou, Maiga; Nguyen,Thuy; Joel, Gozlan; Zoumana, Diarra; Amadou, Koné; Yacouba, Cissoko; Issiaka, Maiga Almoustapha; Claudia, Hawkins A; Robert, Murphy L; Morand-Joubert, Laurence; Mahamadou, Diakité; Jane, Holl L; Sally, McFall M
  3. Journal of Virological Methods. 2024, Sep 02; 330: 115026.
  1. 6.   Dietary therapy of murine primary biliary cholangitis induces hepatocellular steatosis: A cautionary tale
  2. Zhang, Weici; Al Tekreeti, Taha; Leung, Patrick S C; Tsuneyama, Koichi; Dhillon, Harleen; Rojas, Manuel; Heuer, Luke S; Ridgway, William M; Ansari, Aftab A; Young,Howard; Mackay, Charles R; Gershwin, M Eric
  3. Liver International : official journal of the International Association for the Study of the Liver. 2024, Aug 05;
  1. 7.   Inhibition of HIV-1 release by ADAM metalloproteinase inhibitors
  2. Ireland, Joanna; Segura, Jason; Shi,Genbin; Buchwald, Julianna; Roth, Gwynne; Shen, Thomas Juncheng; Wang, Ruipeng; Ji,Xinhua; Fischer, Elizabeth R; Moir, Susan; Chun, Tae-Wook; Sun, Peter D
  3. Frontiers in Microbiology. 2024, Mar 20; 15: 1385775.
  1. 8.   Interferon induced circRNAs escape herpesvirus host shutoff and suppress lytic infection
  2. Dremel, Sarah E; Tagawa, Takanobu; Koparde,Vishal; Hernandez-Perez, Carmen; Arbuckle, Jesse H; Kristie, Thomas M; Krug, Laurie T; Ziegelbauer, Joseph M
  3. EMBO Reports. 2024, Mar; 25(3): 1541-1569.
  1. 9.   Immunostimulation of Fibrous Nucleic Acid Nanoparticles Can be Modulated through Aptamer-Based Functional Moieties: Unveiling the Structure-Activity Relationship and Mechanistic Insights
  2. Rebolledo, Laura P; Ke, Weina; Cedrone,Edward; Wang, Jian; Majithia, Krishna; Johnson, M Brittany; Dokholyan, Nikolay V; Dobrovolskaia,Marina; Afonin, Kirill A
  3. ACS Applied Materials & Interfaces. 2024, Feb 12;
  1. 10.   Structural analysis and molecular substrate recognition properties of Arabidopsis thaliana ornithine transcarbamylase, the molecular target of phaseolotoxin produced by Pseudomonas syringae
  2. Nielipinski, Maciej; Pietrzyk-Brzezinska, Agnieszka J; Wlodawer,Alexander; Sekula, Bartosz
  3. Frontiers in Plant Science. 2023, Dec 18; 14: 1297956.
  1. 11.   Tissue Inhibitors of Metalloproteinases are proteolytic targets of Matrix Metalloproteinase 9
  2. Coates-Park, Sasha; Lazaroff, Carolyn; Gurung, Sadeechya; Rich, Josh; Colladay, Alexandra; O'Neill,Maura; Butler, Georgina S; Overall, Christopher M; Stetler-Stevenson, William G; Peeney, David
  3. Matrix Biology : Journal of the International Society for Matrix Biology. 2023, Nov; 123: 59-70.
  1. 12.   Reactive Oxygen Species-Sensitive Biodegradable Mesoporous Silica Nanoparticles Harboring TheraVac Elicit Tumor-Specific Immunity for Colon Tumor Treatment
  2. Huang,Yue; Nahar, Saifun; Alam, Md Masud; Hu, Shuo; McVicar,Dan; Yang,De
  3. ACS Nano. 2023, Oct 13;
  1. 13.   Covalent Macrocyclic Proteasome Inhibitors Mitigate Resistance in Plasmodium falciparum
  2. Bennett, John M; Ward, Kurt E; Muir, Ryan K; Kabeche, Stephanie; Yoo,Euna; Yeo, Tomas; Lam, Grace; Zhang, Hao; Almaliti, Jehad; Berger, Gabriel; Faucher, Franco F; Lin, Gang; Gerwick, William H; Yeh, Ellen; Fidock, David A; Bogyo, Matthew
  3. ACS Infectious Diseases. 2023, Oct 13; 9(10): 2036-2047.
  1. 14.   Structure of Complex III with Bound Antimalarial Agent CK-2-68 Provides Insights into Selective Inhibition of Plasmodium Cytochrome bc1 Complexes
  2. Esser, Lothar; Zhou, Fei; Zeher, Allison; Wu, Weimin; Huang, Rick; Yu, Chang-An; Lane, Kristin D; Wellems, Thomas E; Xia, Di
  3. The Journal of Biological Chemistry. 2023, Jul; 299(7): 104860.
  1. 15.   Identification of Structural and Morphogenesis Genes of Sulfitobacter Phage FGT1 and Placement within the Evolutionary History of the Podoviruses
  2. Hardies, Stephen C; Cho, Byung Cheol; Jang, Gwang Il; Wang,Jenny; Hwang, Chung Yeon
  3. Viruses. 2023, Jun 29; 15(7):
  1. 16.   Whole organism profiling of the Timp gene family
  2. Peeney, David; Fan, Yu; Gurung, Sadeechya; Lazaroff, Carolyn; Ratnayake, Shashikala; Warner,Andrew; Karim,Baktiar; Meerzaman, Daoud; Stetler-Stevenson, William G
  3. Matrix Biology Plus. 2023, Jun; 18: 100132.
  1. 17.   Screen for New Antimicrobial Natural Products from the NCI Program for Natural Product Discovery Prefractionated Extract Library
  2. Martínez-Fructuoso, Lucero; Arends, S J Ryan; Freire,Vitor; Evans,Jason; DeVries, Sean; Peyser,Brian; Akee,Rhone; Thornburg,Chris; Kumar,Rohitesh; Ensel,Susan; Morgan, Gina M; McConachie, Grant D; Veeder, Nathan; Duncan, Leonard R; Grkovic,Tanja; O'Keefe,Barry
  3. ACS Infectious Diseases. 2023, May 10;
  1. 18.   Innate Immune Stimulation Using 3D Wireframe DNA Origami
  2. Du, Rebecca R; Cedrone,Edward; Romanov, Anna; Falkovich, Reuven; Dobrovolskaia,Marina; Bathe, Mark
  3. ACS Nano. 2022, Dec 02;
  1. 19.   Dual B-cell targeting therapy ameliorates autoimmune cholangitis
  2. Zhang, Weici; Shao, Tihong; Leung, Patrick S C; Tsuneyama, Koichi; Heuer, Luke; Young,Howard; Ridgway, William M; Gershwin, M Eric
  3. Journal of Autoimmunity. 2022, Aug 24; 132: 102897.
  1. 20.   Noninferiority testing with censoring when the event rate is low
  2. Gallagher, Shannon K; Wang,Jing; Lumbard, Keith; Dodd, Lori E; Proschan, Michael
  3. Statistics in Medicine. 2022, Aug 22;
  1. 21.   Cefiderocol and the Need for Higher-Quality Evidence: Methods Matter for Patients
  2. Epling, Brian P; Powers,John
  3. Antimicrobial Agents and Chemotherapy. 2022, Jul 18; e0076622.
  1. 22.   Synthesis and Biological Evaluation of Highly Active 7-Anilino Triazolopyrimidines as Potent Antimicrotubule Agents
  2. Oliva, Paola; Romagnoli, Romeo; Cacciari, Barbara; Manfredini, Stefano; Padroni, Chiara; Brancale, Andrea; Ferla, Salvatore; Hamel,Ernest; Corallo, Diana; Aveic, Sanja; Milan, Noemi; Mariotto, Elena; Viola, Giampietro; Bortolozzi, Roberta
  3. Pharmaceutics. 2022, Jun 02; 14(6):
  1. 23.   Multipurpose peptides: The venoms of Amazonian stinging ants contain anthelmintic ponericins with diverse predatory and defensive activities
  2. Nixon, Samantha A.; Robinson, Samuel D.; Agwa,Akello; Walker, Andrew A.; Choudhary, Shivani; Touchard, Axel; Undheim, Eivind A. B.; Robertson, Alan; Vetter, Irina; Schroeder,Christina; Kotze, Andrew C.; Herzig, Volker; King, Glenn F.
  3. BIOCHEMICAL PHARMACOLOGY. 2021, Oct; 192
  1. 24.   Experimental Babesia rossi infection induces hemolytic, metabolic, and viral response pathways in the canine host
  2. Smith, Rachel L; Goddard, Amelia; Boddapati, Arun; Brooks, Steven; Schoeman, Johan P; Lack,Justin; Leisewitz, Andrew; Ackerman, Hans
  3. BMC genomics. 2021, Aug 16; 22(1): 619.
  1. 25.   The mechanism driving a solid-solid phase transition in a biomacromolecular crystal
  2. Ramakrishnan, Saminathan; Stagno,Jason; Heinz,Will; Zuo, Xiaobing; Yu,Ping; Wang,Yun-Xing
  3. IUCrJ. 2021, Jul 01; 8(Pt 4): 655-664.
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