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  1. 1.   Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome
  2. Masood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G; Zheng, Lily; Zhao,Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A; Xiao, Wenming; Meerzaman, Daoud M
  3. Genome Biology. 2024, Jun 20; 25(1): 163.
  1. 2.   Tools and tactics to define specificity of metabolic chemical reporters
  2. Mukherjee, Mana Mohan; Bond, Michelle R; Abramowitz, Lara K; Biesbrock, Devin; Woodroofe, Carolyn C; Kim, Eun Ju; Swenson, Rolf E; Hanover, John A
  3. Frontiers in Molecular Biosciences. 2023, Dec 7; 10: 1286690.
  1. 3.   Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States
  2. Kassaye, Seble G; Grossman, Zehava; Vengurlekar, Priyanka; Chai, William; Wallace, Megan; Rhee, Soo-Yon; Meyer, William A; Kaufman, Harvey W; Castel, Amanda; Jordan, Jeanne; Crandall, Keith A; Kang, Alisa; Kumar, Princy; Katzenstein, David A; Shafer, Robert W; Maldarelli,Frank
  3. Viruses. 2022, Dec 25; 15(1):
  1. 4.   Guidance for setting international standards on reporting longitudinal adherence to stool-based colorectal cancer screening
  2. van Wifferen, Francine; Greuter, Marjolein J E; Lissenberg-Witte, Birgit I; Carvalho, Beatriz; Meijer, Gerrit A; Dekker, Evelien; Campari, Cinzia; Garcia, Montse; Rabeneck, Linda; Lansdorp-Vogelaar, Iris; Senore, Carlo; Coupé, Veerle M H; Segnan, Nereo; McCarthy, Sharon; Puricelli Perin,Douglas; Portillo, Isabel; Jahn, Beate
  3. Preventive Medicine. 2022, Aug 10; 107187.
  1. 5.   Integrated Analysis of Co-expression and Exome Sequencing to Prioritize Susceptibility Genes for Familial Cutaneous Melanoma
  2. Yepes, Sally; Tucker, Margaret A; Koka, Hela; Xiao, Yanzi; Zhang, Tongwu; Jones,Kristine; Vogt,Aurelie; Burdett,Laurie; Luo,Wen; Zhu,Bin; Hutchinson,Amy; Yeager, Meredith; Hicks,Belynda; Brown, Kevin M; Freedman, Neal D; Chanock, Stephen J; Goldstein, Alisa M; Yang, Xiaohong R
  3. The Journal of Investigative Dermatology. 2022, Feb 15;
  1. 6.   SARS-CoV-2 S2P spike ages through distinct states with altered immunogenicity
  2. Olia, Adam S.; Tsybovsky,Yaroslav; Chen, Steven J.; Liu, Cuiping; Nazzari, Alexandra F.; Ou, Li; Wang, Lingshu; Kong, Wing-Pui; Leung, Kwan; Liu, Tracy; Stephens,Tyler; Teng, I-Ting; Wang, Shuishu; Yang, Eun Sung; Zhang, Baoshan; Zhang, Yi; Zhou, Tongqing; Mascola, John R.; Kwong, Peter D.
  3. The Journal of biological chemistry. 2021, Oct; 297(4):
  1. 7.   SASH3 variants cause a novel form of X-linked combined immunodeficiency with immune dysregulation
  2. Delmonte, Ottavia M.; Bergerson, Jenna R. E.; Kawai, Tomoki; Kuehn, Hye Sun; McDermott, David H.; Cortese, Irene; Zimmermann, Michael T.; Dobbs, A. Kerry; Bosticardo, Marita; Fink,Dani; Majumdar, Shamik; Palterer, Boaz; Pala, Francesca; Dsouza, Nikita R.; Pouzolles, Marie; Taylor, Naomi; Calvo, Katherine R.; Daley, Stephen R.; Velez, Daniel; Agharahimi, Anahita; Myint-Hpu, Katherine; Dropulic, Lesia K.; Lyons, Jonathan J.; Holland, Steven M.; Freeman, Alexandra F.; Ghosh, Rajarshi; Similuk, Morgan B.; Niemela, Julie E.; Stoddard, Jennifer; Kuhns,Doug; Urrutia, Raul; Rosenzweig, Sergio D.; Walkiewicz, Magdalena A.; Murphy, Philip M.; Notarangelo, Luigi D.
  3. BLOOD. 2021, Sep 23; 138(12): 1019-1033.
  1. 8.   SAVI, in silico generation of billions of easily synthesizable compounds through expert-system type rules
  2. Patel,Hitesh; Ihlenfeldt, Wolf-Dietrich; Judson, Philip N; Moroz, Yurii S; Pevzner, Yuri; Peach,Megan; Delannee,Victorien; Tarasova,Nadya; Nicklaus,Marc
  3. Scientific data. 2020, NOV 11; 7(1): 384.
  1. 9.   Characterization by Empirical and Computational Methods of Dictyospiromide, an Intriguing Antioxidant Alkaloid from the Marine Alga Dictyota coriacea
  2. Yan, Pengcheng; Li, Ge; Wang, Chaojie; Wu, Jianzhang; Sun, Zhongmin; Martin, Gary E; Wang, Xiao; Reibarkh, Mikhail; Saurí, Josep; Gustafson,Kirk
  3. Organic letters. 2019, Sep 20; 21(18): 7577-7581.
  1. 10.   Elucidation of Spirodactylone, a Polycyclic Alkaloid from the Sponge Dactylia sp., and Nonenzymatic Generation from the Co-metabolite Denigrin B
  2. Kang,Unwoo; Caldwell,Donald; Cartner, Laura K.; Wang,Dongdong; Kim,Chang-Kwon; Tian, Xiangrong; Bokesch,Heidi; Henrich,Curtis; Woldemichael,Girma; Schnermann,Martin; Gustafson,Kirk
  3. ORGANIC LETTERS. 2019, Jun 21; 21(12): 4750-4753.
  1. 11.   Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities
  2. Vasaikar, Suhas; Huang, Chen; Wang, Xiaojing; Petyuk, Vladislav A.; Savage, Sara R.; Wen, Bo; Dou, Yongchao; Zhang, Yun; Shi, Zhiao; Arshad, Osama A.; Gritsenko, Marina A.; Zimmerman, Lisa J.; McDermott, Jason E.; Clauss, Therese R.; Moore, Ronald J.; Zhao, Rui; Monroe, Matthew E.; Wang, Yi-Ting; Chambers, Matthew C.; Slebos, Robbert J. C.; Lau, Ken S.; Mo, Qianxing; Ding, Li; Ellis, Matthew; Thiagarajan,Mathangi; Kinsinger, Christopher R.; Rodriguez, Henry; Smith, Richard D.; Rodland, Karin D.; Liebler, Daniel C.; Liu, Tao; Zhang, Bing; Ellis, Matthew J. C.; Bavarva, Jasmin; Borucki, Melissa; Elburn, Kimberly; Hannick, Linda; Vatanian, Negin; Payne, Samuel H.; Carr, Steven A.; Clauser, Karl R.; Gillette, Michael A.; Kuhn, Eric; Mani, D. R.; Cai, Shuang; Ketchum, Karen A.; Thangudu, Ratna R.; Whiteley, Gordon A.; Paulovich, Amanda; Whiteaker, Jeff; Edward, Nathan J.; Madhavan, Subha; McGarvey, Peter B.; Chan, Daniel W.; Shih, Ie-Ming; Zhang, Hui; Zhang, Zhen; Zhu, Heng; Skates, Steven J.; White, Forest M.; Mertins, Philip; Pandey, Akhilesh; Slebos, Robert J. C.; Boja, Emily; Hiltke, Tara; Kinsinger, Christopher R.; Mesri, Mehdi; Rivers, Robert C.; Stein, Stephen E.; Fenyo, David; Ruggles, Kelly; Levine, Douglas A.; Oberti, Mauricio; Rudnick, Paul A.; Snyder, Michael; Tabb, David L.; Zhao, Yingming; Chen, Xian; Ransohoff, David F.; Hoofnagle, Andrew; Sanders, Melinda E.; Wang, Yue; Davies, Sherri R.; Townsend, R. Reid; Watson, Mark
  3. CELL. 2019, May 2; 177(4): 1035-1049.e19.
  1. 12.   Measuring IRB Regulatory Compliance: Development, Testing, and Use of the National Cancer Institute StART Tool
  2. Rooney, Lisa; Covington, Laura; Dedier, Andrea; Samuel, Birdena
  3. JOURNAL OF EMPIRICAL RESEARCH ON HUMAN RESEARCH ETHICS. 2019, Apr; 14(2): 95-106.
  1. 13.   A systematic approach for studying the signs and symptoms of fever in adult patients: the fever assessment tool (FAST).
  2. Ames, Nancy J; Powers, John; Ranucci, Alexandra; Gartrell, Kyungsook; Yang, Li; VanRaden, Mark; Leidy, Nancy Kline; Wallen, Gwenyth R
  3. Health and quality of life outcomes. 2017, Apr 27; 15(1):
  1. 14.   Evolution of domain promiscuity in eukaryotic genomes-a perspective from the inferred ancestral domain architectures
  2. Cohen-Gihon, I.; Fong, J. H.; Sharan, R.; Nussinov, R.; Przytycka, T. M.; Panchenko, A. R.
  3. Molecular Biosystems. 2011, Mar 1; 7(3): 784-792.
  1. 15.   Gene duplications in prokaryotes can be associated with environmental adaptation
  2. Bratlie, M. S.; Johansen, J.; Sherman, B. T.; Huang, D. W.; Lempicki, R. A.; Drablos, F.
  3. Bmc Genomics. 2010, Oct; 11: 17.
  1. 16.   Characterizations and validations of novel antibodies toward translational research
  2. Williams, R.; Chung, J. Y.; Ylaya, K.; Whiteley, G.; Hewitt, S. M.
  3. Proteomics Clinical Applications. 2010, Jul; 4(6-7): 618-625.
  1. 17.   Multiplex Manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR
  2. Holleley, C. E.; Geerts, P. G.
  3. Biotechniques. 2009 46(7): 511-517.
  1. 18.   Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
  2. Huang, D. W.; Sherman, B. T.; Lempicki, R. A.
  3. Nature Protocols. 2009 4(1): 44-57.
  1. 19.   Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
  2. Huang, D. W.; Sherman, B. T.; Lempicki, R. A.
  3. Nucleic Acids Research. 2009 37(1): 1-13.
  1. 20.   botXminer: mining biomedical literature with a new web-based application
  2. Mudunuri, U.; Stephens, R.; Bruining, D.; Liu, D.; Lebeda, F. J.
  3. Nucleic Acids Research. 2006, Jul; 34: W748-W752.
  1. 21.   Distribution of Epstein-Barr viral load in serum of individuals from nasopharyngeal carcinoma high-risk families in Taiwan
  2. Yang, X. H. R.; Goldstein, A. M.; Chen, C. J.; Rabkin, C. S.; Chen, J. Y.; Cheng, Y. J.; Hsu, W. L.; Sun, B.; Diehl, S. R.; Liu, M. Y.; Walters, M.; Shao, W.; Ortiz-Conde, B. A.; Whitby, D.; Elmore, S. H.; Gulley, M. L.; Hildesheim, A.
  3. International Journal of Cancer. 2006, MAR 1; 118(3): 780-784.
  1. 22.   Transcriptomic response to differentiation induction
  2. Patton, G. W.; Stephens, R.; Sidorov, I. A.; Xiao, X.; Lempicki, R. A.; Dimitrov, D. S.; Shoemaker, R. H.; Tudor, G.
  3. Bmc Bioinformatics. 2006, FEB 17; 7
  1. 23.   Redefining the common insertion site
  2. Wu, X. L.; Luke, B. T.; Burgess, S. M.
  3. Virology. 2006, JAN 20; 344(2): 292-295.
  1. 24.   WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data
  2. Yi, M.; Horton, J. D.; Cohen, J. C.; Hobbs, H. H.; Stephens, R. M.
  3. Bmc Bioinformatics. 2006, JAN 19; 7
  1. 25.   Multicolor fluorescence-based approaches for imaging cytokine-induced alterations in the neovascularization, growth, metastasis, and apoptosis of murine neuroblastoma tumors
  2. Stauffer, J. K.; Khan, T.; Salcedo, R.; Hixon, J. A.; Lincoln, E.; Back, T. C.; Wigginton, J. M.
  3. Journal of Immunotherapy. 2006, MAR-APR; 29(2): 151-164.
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