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  1. 1.   Structural and mechanistic bases for resistance of the M66I capsid variant to lenacapavir
  2. Briganti, Lorenzo; Annamalai, Arun S; Bester, Stephanie M; Wei, Guochao; Andino-Moncada, Jonathan R; Singh, Satya P; Kleinpeter,Alexander; Tripathi, Meghna; Nguyen, Binh; Radhakrishnan, Rajalingam; Singh, Parmit K; Greenwood, Juliet; Schope, Lauren I; Haney, Reed; Huang, Szu-Wei; Freed, Eric O; Engelman, Alan N; Francis, Ashwanth C; Kvaratskhelia, Mamuka
  3. mBio. 2025, Apr 15; e0361324.
  1. 2.   HTLV-1 p13 Protein Hijacks Macrophage Polarization and Promotes T-Cell Recruitment
  2. Moles, Ramona; Omsland, Maria; Pise-Masison, Cynthia A; Subleski,Jeffrey; McVicar,Daniel; Sarkis, Sarkis; Gutowska, Anna; Schifanella, Luca; Doster, Melvin; Washington-Parks, Robyn; Ciminale, Vincenzo; Franchini, Genoveffa
  3. Viruses. 2025, Mar 26; 17(4): 471.
  1. 3.   Antiretroviral Therapy within Two Years of HIV Acquisition is Associated with Fewer Viral Blips: A Retrospective Analysis of Over 20 Years of Data from the U.S. Military HIV Natural History Study
  2. Crowell, Trevor A; Hsieh, Hsing-Chuan; Wang, Xun; Chu, Xiuping; Gayle, Britt; Berjohn, Catherine M; Blaylock, Jason M; Yabes, Joseph M; Larson, Derek T; Powers,John; O'Connell, Robert J; Ganesan, Anuradha; Agan, Brian K
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2025, Mar 10;
  1. 4.   Isolation and structure elucidation of Dm-CVNH, a new cyanovirin-N homolog with activity against SARS-CoV-2 and HIV-1
  2. Orfanoudaki,Maria; Krumpe,Lauren; Shenoy, Shilpa R; Wilson,Jennifer; Guszczynski, Tad; Henrich,Curtis; Temme,Joel; Gildersleeve,Jeffrey; Molina-Molina, Elisa; Erkizia, Itziar; Blanco, Julià; Izquierdo-Useros, Nuria; Montiero, Fabio; Tanuri, Amilcar; Rech, Elibio; O'Keefe,Barry
  3. The Journal of Biological Chemistry. 2025, Feb 14; 108319.
  1. 5.   Viral Burden and Illness Severity During Acute SARS-CoV-2 Infection Predict Persistent Long COVID Symptoms
  2. Brandstetter Figueroa, Elisabeth; Frosch, Anne E P; Burrack, Kristina S; Dileepan, Gayathri; Goldsmith, Rachael; Harris, Morgan; Ikeogu, Nwando; Jibrell, Hodan; Thayalan, Sangeitha; Dewar,Robin; Shenoy, Chetan; Sereti, Irini; Baker, Jason V
  3. Open Forum Infectious Diseases. 2025, Feb; 12(2): ofaf048.
  1. 6.   SARS-CoV-2 RNA and nucleocapsid antigen are blood biomarkers associated with severe disease outcomes that improve in response to remdesivir
  2. Singh, Kanal; Rubenstein,Kevin; Callier,Viviane; Shaw-Saliba, Katy; Rupert,Adam; Dewar,Robin; Laverdure,Sylvain; Highbarger,Helene; Lallemand,Perrine; Huang, Meei-Li; Jerome, Keith R; Sampoleo, Reigran; Mills, Margaret G; Greninger, Alexander L; Juneja, Kavita; Porter, Danielle; Benson, Constance A; Dempsey, Walla; El Sahly, Hana M; Focht, Chris; Jilg, Nikolaus; Paules, Catharine I; Rapaka, Rekha R; Uyeki, Timothy M; Lane, H Clifford; Beigel, John; Dodd, Lori E
  3. The Journal of Infectious Diseases. 2024, Sep 23; 230(3): 624-634.
  1. 7.   Impact of baseline SARS-CoV-2 load in plasma and upper airways on the incidence of acute extrapulmonary complications of COVID-19: a multicentric, prospective, cohort study
  2. Jensen, Tomas O; Harper, Katrina; Gupta, Shaili; Liu, Sean T; Dharan, Nila J; Baker, Jason V; Pett, Sarah L; Shaw-Saliba, Kathryn; Esmail, Aliasgar; Ho, Minh Q; Almasri, Eyad; Dewar,Robin; Lundgren, Jens; Vock, David M
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2024, Sep 13;
  1. 8.   MoMo30 Binds to SARS-CoV-2 Spike Variants and Blocks Infection by SARS-CoV-2 Pseudovirus
  2. DeBarros, Kenya; Khan, Mahfuz; Coleman, Morgan; Bond, Vincent C; Floyd, Virginia; Gbodossou, Erick; Diop, Amad; Krumpe,Lauren; O'Keefe,Barry; Powell, Michael D
  3. Viruses. 2024, Sep 07; 16(9):
  1. 9.   HIV-1 control in vivo is related to the number but not the fraction of infected cells with viral unspliced RNA
  2. Capoferri,Adam; Wiegand,Ann; Hong, Feiyu; Jacobs, Jana L; Spindler,Jon; Musick,Andrew; Bale, Michael J; Shao, Wei; Sobolewski, Michele D; Cillo, Anthony R; Luke,Brian; Carmody,Christine; Gorelick,Robert; Hoh, Rebecca; Halvas, Elias K; Deeks, Steven G; Coffin, John M; Mellors, John W; Kearney,Mary
  3. Proceedings of the National Academy of Sciences of the United States of America. 2024, Sep 03; 121(36): e2405210121.
  1. 10.   A Multiplexed Real-Time PCR Assay for Simultaneous Quantification of Human Immunodeficiency Virus and Hepatitis B Virus for Low-And-Middle- Income Countries
  2. Bocar, Fofana Djeneba; Aminatou, Coulibaly; Mamoudou, Maiga; Nguyen,Thuy; Joel, Gozlan; Zoumana, Diarra; Amadou, Koné; Yacouba, Cissoko; Issiaka, Maiga Almoustapha; Claudia, Hawkins A; Robert, Murphy L; Morand-Joubert, Laurence; Mahamadou, Diakité; Jane, Holl L; Sally, McFall M
  3. Journal of Virological Methods. 2024, Sep 02; 330: 115026.
  1. 11.   Guanylate-binding protein 5 antagonizes viral glycoproteins independently of furin processing
  2. Veler,Hana; Lun, Cheng Man; Waheed,Abdul; Freed,Eric
  3. mBio. 2024, Aug 30; e0208624.
  1. 12.   Single-nucleus RNA sequencing reveals loss of DCT1 renal tubules in HIV Vpr transgenic mice
  2. Latt, Khun Zaw; Yoshida, Teruhiko; Shrivastav, Shashi; Abedini, Amin; Reece, Jeff M; Sun, Zeguo; Lee, Hewang; Okamoto, Koji; Dagur, Pradeep; Ishimoto, Yu; Heymann, Jurgen; Zhao,Yongmei; Chung, Joon-Yong; Hewitt, Stephen; Jose, Pedro A; Lee, Kyung; He, John Cijiang; Winkler,Cheryl; Knepper, Mark A; Kino, Tomoshige; Rosenberg, Avi Z; Susztak, Katalin; Kopp, Jeffrey B
  3. The American Journal of Pathology. 2024, Jul 18;
  1. 13.   Human Immunodeficiency Virus Type 1 Gag Polyprotein Modulates Membrane Physical Properties like a Surfactant: Potential Implications for Virus Assembly
  2. Denieva, Zaret G; Kuzmin, Peter I; Galimzyanov, Timur R; Datta,Siddhartha; Rein,Alan; Batishchev, Oleg V
  3. ACS Infectious Diseases. 2024, Jun 25;
  1. 14.   The association between single-nucleotide polymorphisms within type 1 interferon pathway genes and human immunodeficiency virus type 1 viral load in antiretroviral-naïve participants
  2. Mørup, Sara Bohnstedt; Leung, Preston; Reilly, Cavan; Sherman,Brad; Chang,Weizhong; Milojevic, Maja; Milinkovic, Ana; Liappis, Angelike; Borgwardt, Line; Petoumenos, Kathy; Paredes, Roger; Mistry, Shweta S; MacPherson, Cameron R; Lundgren, Jens; Helleberg, Marie; Reekie, Joanne; Murray, Daniel D
  3. AIDS Research and Therapy. 2024, May 03; 21(1): 27.
  1. 15.   Autophagy Deregulation in HIV-1-Infected Cells Increases Extracellular Vesicle Release and Contributes to TLR3 Activation
  2. DeMarino, Catherine; Cowen, Maria; Williams, Anastasia; Khatkar, Pooja; Abulwerdi, Fardokht A; Henderson, Lisa; Denniss, Julia; Pleet, Michelle L; Luttrell, Delores R; Vaisman, Iosif; Liotta, Lance A; Steiner, Joseph; Le Grice, Stuart F J; Nath, Avindra; Kashanchi, Fatah
  3. Viruses. 2024, Apr 20; 16(4):
  1. 16.   Inhibition of HIV-1 release by ADAM metalloproteinase inhibitors
  2. Ireland, Joanna; Segura, Jason; Shi,Genbin; Buchwald, Julianna; Roth, Gwynne; Shen, Thomas Juncheng; Wang, Ruipeng; Ji,Xinhua; Fischer, Elizabeth R; Moir, Susan; Chun, Tae-Wook; Sun, Peter D
  3. Frontiers in Microbiology. 2024, Mar 20; 15: 1385775.
  1. 17.   Viral and Host Factors Are Associated With Mortality in Hospitalized Patients With COVID-19
  2. Aggarwal, Neil R; Nordwall, Jacquie; Braun, Dominique L; Chung, Lucy; Coslet, Jordan; Der, Tatyana; Eriobu, Nnakelu; Ginde, Adit A; Hayanga, Awori J; Highbarger, Helene; Holodniy, Mark; Horcajada, Juan P; Jain, Mamta K; Kim, Kami; Laverdure, Sylvain; Lundgren, Jens; Natarajan, Ven; Nguyen, Hien H; Pett, Sarah L; Phillips, Andrew; Poulakou, Garyphallia; Price, David A; Robinson, Philip; Rogers, Angela J; Sandkovsky, Uriel; Shaw-Saliba, Katy; Sturek, Jeffrey M; Trautner, Barbara W; Waters, Michael; Reilly, Cavan
  3. Clinical Infectious Diseases : an official publication of the Infectious Diseases Society of America. 2024, Feb 20;
  1. 18.   Temporal dynamics and drivers of durable HIV viral load suppression and persistent high- and low-level viraemia during Universal Test and Treat scale-up in Uganda: a population-based study
  2. Rosen, Joseph Gregory; Ssekubugu, Robert; Chang, Larry W; Ssempijja,Victor; Galiwango, Ronald M; Ssekasanvu, Joseph; Ndyanabo, Anthony; Kisakye, Alice; Nakigozi, Gertrude; Rucinski, Katherine B; Patel, Eshan U; Kennedy, Caitlin E; Nalugoda, Fred; Kigozi, Godfrey; Ratmann, Oliver; Nelson, Lisa J; Mills, Lisa A; Kabatesi, Donna; Tobian, Aaron A R; Quinn, Thomas C; Kagaayi, Joseph; Reynolds, Steven J; Grabowski, Mary Kathryn
  3. Journal of the International AIDS Society. 2024, Feb; 27(2): e26200.
  1. 19.   Clinical and molecular characterization of children and adults with respiratory bocavirus infection in Mexico: a cross-sectional nested study within the ILI002 prospective observational study
  2. Gamiño-Arroyo, Ana Estela; Arellano-Galindo, José; Del Carmen Guerra-de-Blas, Paola; Ortega-Villa, Ana M; Mateja,Allyson; Llamosas-Gallardo, Beatriz; Ortíz-Hernández, Ana A; Valdéz-Vázquez, Rafael; Ramírez-Venegas, Alejandra; Galindo-Fraga, Arturo; Guerrero, Ma Lourdes; Ramos-Cervantes, Pilar; Mendoza-Garcés, Luis; González-Matus, Mónica; Marroquín-Rojas, Carmen; Xicohtencatl-Cortes, Juan; Ochoa, Sara A; Cruz-Córdova, Ariadna; Powers,John; Ruiz-Palacios, Guillermo Miguel; Beigel, John; Moreno-Espinosa, Sarbelio
  3. Lancet Regional Health. Americas. 2024, Jan; 29: 100647.
  1. 20.   Viral escape mutations do not account for non-protection from SIVmac239 challenge in RhCMV/SIV vaccinated rhesus macaques
  2. Bimber, Benjamin N; Sunshine, Justine; McElfresh, G W; Reed, Jason S; Pathak, Reese; Bateman, Katherine B; Hughes, Colette M; Gilbride, Roxanne M; Ford, Julia C; Morrow, David; Lifson,Jeffrey; Sacha, Jonah B; Hansen, Scott G; Picker, Louis J
  3. Frontiers in Immunology. 2024 15: 1444621.
  1. 21.   Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses
  2. Normandin, Erica; Triana, Sergio; Raju, Siddharth S; Lan, Tammy C T; Lagerborg, Kim; Rudy, Melissa; Adams, Gordon C; DeRuff, Katherine C; Logue, James; Liu, David; Strebinger, Daniel; Rao, Arya; Messer, Katelyn S; Sacks, Molly; Adams, Ricky D; Janosko, Krisztina; Kotliar, Dylan; Shah, Rickey; Crozier,Ian; Rinn, John L; Melé, Marta; Honko, Anna N; Zhang, Feng; Babadi, Mehrtash; Luban, Jeremy; Bennett, Richard S; Shalek, Alex K; Barkas, Nikolaos; Lin, Aaron E; Hensley, Lisa E; Sabeti, Pardis C; Siddle, Katherine J
  3. Cell Genomics. 2023, Dec 13; 3(12): 100440.
  1. 22.   Viral dissemination and immune activation modulate antiretroviral drug levels in lymph nodes of SIV-infected rhesus macaques
  2. Srinivasula,Sharat; Degrange, Paula; Perazzolo, Simone; Bonvillain, Andrew; Tobery, Amanda; Kaplan, Jacob; Jang, Hyukjin; Turnier, Refika; Davies, Michael; Cottrell, Mackenzie; Ho, Rodney J Y; Di Mascio, Michele
  3. Frontiers in Immunology. 2023, Sep 18; 14: 1213455.
  1. 23.   The largest HIV-1-infected T cell clones in children on long-term combination antiretroviral therapy contain solo LTRs
  2. Botha, Johannes C; Demirov,Dimiter; Gordijn, Carli; Katusiime, Mary Grace; Bale, Michael J; Wu,Xiaolin; Wells, Daria; Hughes,Stephen; Cotton, Mark F; Mellors, John W; Kearney, Mary F; van Zyl, Gert U
  3. mBio. 2023, Aug 02; e0111623.
  1. 24.   Inhibition of neutral sphingomyelinase 2 impairs HIV-1 envelope formation and substantially delays or eliminates viral rebound
  2. Yoo, Seung-Wan; Waheed,Abdul; Deme, Pragney; Tohumeken, Sehmus; Rais, Rana; Smith, Matthew D; DeMarino, Catherine; Calabresi, Peter A; Kashanchi, Fatah; Freed,Eric; Slusher, Barbara S; Haughey, Norman J
  3. Proceedings of the National Academy of Sciences of the United States of America. 2023, Jul 11; 120(28): e2219543120.
  1. 25.   Comparison of Epstein-Barr virus and Kaposi's sarcoma-associated herpesvirus viral load in peripheral blood mononuclear cells and oral fluids of HIV-negative individuals aged 3-89 years from Uganda
  2. Nalwoga, Angela; Marshall,Vickie; Miley,Wendell; Labo,Nazzarena; Whitby,Denise; Newton, Robert; Rochford, Rosemary
  3. Infectious Agents and Cancer. 2023, Jun 14; 18(1): 38.
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