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  1. 1.   Widespread distribution of transcriptionally active, clonally expanded, HIV-1 proviruses despite suppressive antiretroviral therapy
  2. Imamichi, Hiromi; Natarajan,Venkatachala; Scrimieri,Francesca; Smith, Mindy; Badralmaa,Yunden; Bosche,Marjorie; Hensien, Jack M; Buerkert, Thomas; Sherman,Brad; Sherman, Brad T; Singh, Kanal; Lane, H Clifford
  3. The Journal of Clinical Investigation. 2025, Apr 22;
  1. 2.   Contribution of intact viral genomes persisting in blood and tissues during ART to plasma viral rebound in SHIV-infected rhesus macaques
  2. Trifone, César; Richard, Corentin; Pagliuzza, Amélie; Dufour, Caroline; Lemieux, Audrée; Clark, Natasha M; Janaka, Sanath K; Fennessey,Christine; Keele,Brandon; Fromentin, Rémi; Estes, Jacob D; Kaufmann, Daniel E; Finzi, Andrés; Evans, David T; Chomont, Nicolas
  3. iScience. 2025, Mar 21; 28(3): 111998.
  1. 3.   Divergent populations of HIV-infected naïve and memory CD4+ T-cell clones in children on antiretroviral therapy
  2. Katusiime, Mary Grace; Neer,Victoria; Guo, Shuang; Patro,Sean; Wang,Wenjie; Luke,Brian; Capoferri,Adam; Wu,Xiaolin; Horner, Anna M; Rausch,Jason; Chahroudi, Ann; Mavigner, Maud; Kearney,Mary
  3. The Journal of Clinical Investigation. 2025, Mar 06;
  1. 4.   MERS-CoV spike vaccine-induced N-terminal domain-specific antibodies are more protective than receptor binding domain-specific antibodies
  2. Abiona, Olubukola M; Wang, Nianshuang; Leist, Sarah R; Schäfer, Alexandra; Cockrell, Adam S; Wang, Lingshu; Bangaru, Sandhya; Stevens, Laura; Graham, Rachel L; Kocher, Jacob F; Tsybovsky,Yaroslav; Kanekiyo, Masaru; Kumar, Azad; Morabito, Kaitlyn M; Rosen, Osnat; Shi, Wei; Werner, Anne; Zhang, Yi; Ziwawo, Cynthia; Dzuvor, Christian K O; Palandjian, Charis; Eastman, Connor; Matthews, Hannah R; Joseph, Jeswin; Chappell, James D; Kong, Wing-Pui; Mascola, John R; Ward, Andrew B; Denison, Mark R; Baric, Ralph; McLellan, Jason S; Graham, Barney S; Corbett-Helaire, Kizzmekia S
  3. iScience. 2025, Feb 21; 28(2): 111632.
  1. 5.   Rapid systemic spread and minimal immune responses following SIVsab intrarectal transmission in African green monkeys
  2. Raehtz, Kevin D; Xu, Cuiling; Deleage,Claire; Ma, Dongzhu; Policicchio, Benjamin B; Brocca-Cofano, Egidio; Piccolo, Daniele; Weaver, Kathryn; Keele,Brandon; Estes, Jacob D; Apetrei, Cristian; Pandrea, Ivona
  3. JCI Insight. 2024, Dec 06; 9(23):
  1. 6.   SARS-CoV-2 papain-like protease (PLpro) plays multiple roles in regulating cellular proteins in the endoplasmic reticulum
  2. Yang,Mei; Mariano,Jennifer; Su, Rebecca; Smith, Christopher E; Das,Sudipto; Gill, Catherine; Andresson,Thorkell; Loncarek,Jadranka; Tsai,Yien Che; Weissman,Allan
  3. The Journal of Biological Chemistry. 2023, Dec; 299(12): 105346.
  1. 7.   Soluble prefusion-closed HIV-envelope trimers with glycan-covered bases
  2. Olia, Adam S; Cheng, Cheng; Zhou, Tongqing; Biju, Andrea; Harris, Darcy R; Changela, Anita; Duan, Hongying; Ivleva, Vera B; Kong, Wing-Pui; Ou, Li; Rawi, Reda; Tsybovsky,Yaroslav; Van Wazer, David J; Corrigan, Angela R; Gonelli, Christopher A; Lee, Myungjin; McKee, Krisha; Narpala, Sandeep; O'Dell, Sijy; Parchment, Danealle K; Stancofski, Erik-Stephane D; Stephens,Tyler; Tan, Ivy; Teng, I-Ting; Wang, Shuishu; Wei, Qing; Yang, Yongping; Yang, Zhengrong; Zhang, Baoshan; Novak, Jan; Renfrow, Matthew B; Doria-Rose, Nicole A; Koup, Richard A; McDermott, Adrian B; Gall, Jason G; Lei, Q Paula; Mascola, John R; Kwong, Peter D
  3. iScience. 2023, Aug 18; 26(8): 107403.
  1. 8.   Comprehensive analysis of HIV reservoirs in elite controllers
  2. Kennedy, Brooke D; Blazkova, Jana; Justement, Jesse S; Shi, Victoria; Rai, M Ali; Manning, Maegan R; Praiss, Lauren; Gittens, Kathleen; Wender, Paul A; Patro,Sean; Wu,Xiaolin; Moir, Susan; Chun, Tae-Wook
  3. The Journal of Clinical Investigation. 2023, Feb 01; 133(3): e165446.
  1. 9.   GS-CA1 and lenacapavir stabilize the HIV-1 core and modulate the core interaction with cellular factors
  2. Selyutina, Anastasia; Hu, Pan; Miller, Sorin; Simons, Lacy M; Yu, Hyun Jae; Hultquist, Judd F; Lee, KyeongEun; KewalRamani, Vineet N; Diaz-Griffero, Felipe
  3. iScience. 2021, Dec 9; 25(1): 103593.
  1. 10.   Glycan Positioning Impacts HIV-1 Env Glycan-Shield Density, Function, and Recognition by Antibodies
  2. Wei, Qing; Hargett, Audra A; Knoppova, Barbora; Duverger, Alexandra; Rawi, Reda; Shen, Chen-Hsiang; Farney, S Katie; Hall, Stacy; Brown, Rhubell; Keele,Brandon; Heath, Sonya L; Saag, Michael S; Kutsch, Olaf; Chuang, Gwo-Yu; Kwong, Peter D; Moldoveanu, Zina; Raska, Milan; Renfrow, Matthew B; Novak, Jan
  3. iScience. 2020, Nov 20; 23(11): 101711.
  1. 11.   HIV-1 viremia not suppressible by antiretroviral therapy can originate from large T cell clones producing infectious virus
  2. Halvas, Elias K; Joseph, Kevin W; Brandt, Leah D; Guo,Amber; Sobolewski, Michele D; Jacobs, Jana L; Tumiotto, Camille; Bui, John K; Cyktor, Joshua C; Keele,Brandon; Morse, Gene D; Bale, Michael J; Shao,Wei; Kearney,Mary; Coffin, John M; Rausch,Jason; Wu,Xiaolin; Hughes,Stephen; Mellors, John W
  3. The Journal of clinical investigation. 2020, NOV 2; 130(11): 5847-5857.
  1. 12.   Dual infection and recombination of Kaposi sarcoma herpesvirus revealed by whole-genome sequence analysis of effusion samples
  2. Cornejo Castro,Elena; Marshall,Vickie; Lack,Justin; Lurain, Kathryn; Immonen,Taina; Labo,Nazzarena; Fisher, Nicholas C; Ramaswami, Ramya; Polizzotto, Mark N; Keele,Brandon; Yarchoan, Robert; Uldrick, Thomas S; Whitby,Denise
  3. Virus Evolution. 2020, Jul; 6(2): veaa047.
  1. 13.   A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals
  2. Cockerham, Leslie R; Yukl, Steven A; Harvill, Kara; Somsouk, Ma; Joshi, Sunil K; Sinclair, Elizabeth; Liegler, Teri; Hoh, Rebecca; Lyons, Sophie; Hunt, Peter W; Rupert, Adam; Sereti, Irini; Morcock, David; Rhodes, Ajantha; Emson, Claire; Hellerstein, Marc K; Estes, Jake; Lewin, Sharon; Deeks, Steven G; Hatano, Hiroyu
  3. Pathogens & Immunity. 2017 2(3): 310-334.
  1. 14.   Prophylaxis With a Middle East Respiratory Syndrome Coronavirus (MERS-CoV)-Specific Human Monoclonal Antibody Protects Rabbits From MERS-CoV Infection
  2. Houser, K. V.; Gretebeck, L.; Ying, T.; Wang, Y.; Vogel, L.; Lamirande, E. W.; Bock, K. W.; Moore, I. N.; Dimitrov, D. S.; Subbarao, K.
  3. The Journal of infectious diseases. 2016, 15-May; 213(10): 1557-61.
  1. 15.   HIV latency. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells
  2. Maldarelli, F.; Wu, X.; Su, L.; Simonetti, F. R.; Shao, W.; Hill, S.; Spindler, J.; Ferris, A. L.; Mellors, J. W.; Kearney, M. F.; Coffin, J. M.; Hughes, S. H.
  3. Science. 2014, 11-Jul; 345(6193): 179-83.
  1. 16.   Identifying and characterizing recently transmitted viruses
  2. Keele, B. F.
  3. Current opinion in HIV and AIDS. 2010, Jul; 5(4): 327-34.
  1. 17.   Virus maturation as a new HIV-1 therapeutic target
  2. Adamson, C. S.; Salzwedel, K.; Freed, E. O.
  3. Expert opinion on therapeutic targets. 2009, Aug; 13(8): 895-908.
  1. 18.   RT-SHIV subpopulation dynamics in infected macaques during anti-HIV therapy
  2. Shao, W.; Kearney, M.; Maldarelli, F.; Mellors, J. W.; Stephens, R. M.; Lifson, J. D.; KewalRamani, V. N.; Ambrose, Z.; Coffin, J. M.; Palmer, S. E.
  3. Retrovirology. 2009 6: 101.
  1. 19.   Methods for the study of HIV-1 assembly
  2. Waheed, A. A.; Ono, A.; Freed, E. O.
  3. Methods in molecular biology (Clifton, N.J.). 2009 485: 163-184.
  1. 20.   Incomplete protection against simian immunodeficiency virus vaginal transmission in rhesus macaques by a topical antiviral agent revealed by repeat challenges
  2. Ambrose, Z.; Compton, L.; Piatak, M.; Lu, D.; Alvord, W. G.; Lubomirski, M. S.; Hildreth, J.; Lifson, J. D.; Miller, C. J.; KewalRamani, V. N.
  3. Journal of Virology. 2008 82(13): 6591-6599.
  1. 21.   Residues in the Stalk Domain of the Hendra Virus G Glycoprotein Modulate Conformational Changes Associated with Receptor Binding
  2. Bishop, K. A.; Hickey, A. C.; Khetawat, D.; Patch, J. R.; Bossart, K. N.; Zhu, Z. Y.; Wang, L. F.; Dimitrov, D. S.; Broder, C. C.
  3. Journal of Virology. 2008 82(22): 11398-11409.
  1. 22.   Functional studies of host-specific ephrin-B ligands as Henipavirus receptors
  2. Bossart, K. N.; Tachedjian, M.; McEachern, J. A.; Crameri, G.; Zhu, Z. Y.; Dimitrov, D. S.; Broder, C. C.; Wang, L. F.
  3. Virology. 2008 372(2): 357-371.
  1. 23.   Marked epitope- and allele- specific differences in rates of mutation in human immunodeficiency type 1 (HIV-1) Gag, Pol, and Nef cytotoxic T-lymphocyte epitopes in acute/early HIV-1 infection
  2. Brumme, Z. L.; Brumme, C. J.; Carlson, J.; Streeck, H.; John, M.; Eichbaum, Q.; Block, B. L.; Baker, B.; Kadie, C.; Markowitz, M.; Jessen, H.; Kelleher, A. D.; Rosenberg, E.; Kaldor, J.; Yuki, Y.; Carrington, M.; Allen, T. M.; Mallal, S.; Altfeld, M.
  3. Journal of Virology. 2008 82(18): 9216-9227.
  1. 24.   Retroviruses Human Immunodeficiency Virus and Murine Leukemia Virus Are Enriched in Phosphoinositides
  2. Chan, R.; Uchil, P. D.; Jin, J.; Shui, G. H.; Ott, D. E.; Mothes, W.; Wenk, M. R.
  3. Journal of Virology. 2008 82(22): 11228-11238.
  1. 25.   The effects of alternate polypurine tracts (PPTs) and mutations of sequences adjacent to the PPT on viral replication and cleavage specificity of the Rous sarcoma virus reverse transcriptase
  2. Chang, K. W.; Oh, J.; Alvord, W. G.; Hughes, S. H.
  3. Journal of Virology. 2008 82(17): 8592-8604.
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