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  1. 1.   A robust fluorogenic substrate for chikungunya virus protease (nsP2) activity
  2. Makhaik, Sparsh; Rut, Wioletta; Choudhary, Shruti; Upadhyay, Tulsi; Hao, Chenzhou; Westberg, Michael; Bobst, Cedric; Yoo,Euna; Fejzo, Jasna; Lin, Michael Z; Bogyo, Matthew; Thompson, Paul; Drag, Marcin; Hardy, Jeanne A
  3. Protein Science : a publication of the Protein Society. 2025, Mar; 34(3): e70069.
  1. 2.   Improvements in large-scale production of Tobacco Etch Virus protease
  2. Messing,Simon; Barnhart,Kirsten; Drew,Matt; Granato-Guerrero,Natalie; Grose,Carissa; Higgins,Brianna; Hong,Min; Hull,Jenna; Perkins,Shelley; Poon,Ivy; Ramakrishnan,Nitya; Seabolt,Amanda; Taylor,Troy; Wall,Vanessa; Wright,Nick; Gillette,Bill; Esposito,Dom
  3. Protein Expression and Purification. 2024, Dec 14; 106648.
  1. 3.   Unexpected tobacco etch virus (TEV) protease cleavage of recombinant human proteins
  2. Beaumont,Lauren; Mehalko,Jennifer; Johnson,Adam; Wall,Vanessa; Esposito,Dom
  3. Protein Expression and Purification. 2024, Apr 26; 220: 106488.
  1. 4.   An overview of enzymatic reagents for the removal of affinity tags
  2. Waugh, D. S.
  3. Protein Expression and Purification. 2011, Dec; 80(2): 283-293.
  1. 5.   Crystal structure of XMRV protease differs from the structures of other retropepsins
  2. Li, M.; DiMaio, F.; Zhou, D. W.; Gustchina, A.; Lubkowski, J.; Dauter, Z.; Baker, D.; Wlodawer, A.
  3. Nature Structural & Molecular Biology. 2011, Feb; 18(2): 227-229.
  1. 6.   Molecular replacement with pseudosymmetry and model dissimilarity: a case study
  2. Jaskolski, M.; Li, M.; Laco, G.; Gustchina, A.; Wlodawer, A.
  3. Acta Crystallographica Section D-Biological Crystallography. 2006, FEB; 62(Part 2): 208-215.
  1. 7.   Solubility-enhancing proteins MBP and NusA play a passive role in the folding of their fusion partners
  2. Nallamsetty, S.; Waugh, D. S.
  3. Protein Expression and Purification. 2006, JAN; 45(1): 175-182.
  1. 8.   Gateway vectors for the production of combinatorially-tagged His(6)-MBP fusion proteins in the cytoplasm and periplasm of Escherichia Coli
  2. Nallamsetty, S.; Austin, B. P.; Penrose, K. J.; Waugh, D. S.
  3. Protein Science. 2005, DEC; 14(12): 2964-2971.
  1. 9.   Application of InChI to curate, index, and query 3-D structures
  2. Prasanna, M. D.; Vondrasek, J.; Wlodawer, A.; Bhat, T. N.
  3. Proteins-Structure Function and Bioinformatics. 2005, JUL 1; 60(1): 1-4.
  1. 10.   Making the most of affinity tags
  2. Waugh, D. S.
  3. Trends in Biotechnology. 2005, JUN; 23(6): 316-320.
  1. 11.   Comparison of the substrate specificity of two potyvirus proteases
  2. Tozser, J.; Tropea, J. E.; Cherry, S.; Bagossi, P.; Copeland, T.; Wlodawer, A.; Waugh, D. S.
  3. Febs Journal. 2005, JAN; 272(2): 514-523.
  1. 12.   Inhibition of human endogenous retrovirus-K10 protease in cell- free and cell-based assays
  2. Kuhelj, R.; Rizzo, C. J.; Chang, C. H.; Jadhav, P. K.; Towler, E. M.; Korant, B. D.
  3. Journal of Biological Chemistry. 2001 276(20): 16674-16682.
  1. 13.   The influence of natural products upon drug discovery
  2. Newman, D. J.; Cragg, G. M.; Snader, K. M.
  3. Natural Product Reports. 2000 17(3): 215-234.
  1. 14.   Drug resistance mutations can affect dimer stability of HIV-1 protease at neutral pH
  2. Xie, D.; Gulnik, S.; Gustchina, E.; Yu, B.; Shao, W.; Qoronfleh, W.; Nathan, A.; Erickson, J. W.
  3. Protein Science. 1999 8(8): 1702-1707.
  1. 15.   Catalytic Triads and Their Relatives
  2. Dodson, G.; Wlodawer, A.
  3. Trends in Biochemical Sciences. 1998 23(9): 347-352.
  1. 16.   Database of Hiv Proteinase Structures
  2. Vondrasek, J.; Wlodawer, A.
  3. Trends in Biochemical Sciences. 1997 22(5): 183.
  1. 17.   4-Hydroxy-5,6-Dihydropyrones .2. Potent Non-Peptide Inhibitors of Hiv Protease
  2. Tait, B. D.; Hagen, S.; Domagala, J.; Ellsworth, E. L.; Gajda, C.; Hamilton, H. W.; Prasad, J.; Ferguson, D.; Graham, N.; Hupe, D.; Nouhan, C.; Tummino, P. J.; Humblet, C.; Lunney, E. A.; Pavlovsky, A.; Rubin, J.; Gracheck, S. J.; Baldwin, E. T.; Bhat, T. N.; Erickson, J. W.; Gulnik, S. V.; Liu, B. S.
  3. Journal of Medicinal Chemistry. 1997 40(23): 3781-3792.
  1. 18.   Activity of Tethered Human Immunodeficiency Virus 1 Protease Containing Mutations in the Flap Region of One Subunit
  2. Tozser, J.; Yin, F. H.; Cheng, Y. S. E.; Bagossi, P.; Weber, I. T.; Harrison, R. W.; Oroszlan, S.
  3. European Journal of Biochemistry. 1997 244(1): 235-241.
  1. 19.   Data Base of Three-Dimensional Structures of Hiv Proteinases
  2. Vondrasek, J.; Vanbuskirk, C. P.; Wlodawer, A.
  3. Nature Structural Biology. 1997 4(1): 8.
  1. 20.   Removal of Affinity Tags with TEV Protease.
  2. Raran-Kurussi, Sreejith; Cherry, Scott; Zhang, Di; Waugh, David
  3. Methods in molecular biology (Clifton, N.J.). 2017 1586: 221-230.
  1. 21.   Expression and Purification of Recombinant Proteins in Escherichia coli with a His6 or Dual His6-MBP Tag.
  2. Raran-Kurussi, Sreejith; Waugh, David
  3. Methods in molecular biology (Clifton, N.J.). 2017 1607: 1-15.
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